* [gentoo-commits] gentoo-x86 commit in sci-biology/vaal: vaal-1.6.ebuild ChangeLog
@ 2010-09-20 4:50 Andrey Kislyuk (weaver)
0 siblings, 0 replies; 4+ messages in thread
From: Andrey Kislyuk (weaver) @ 2010-09-20 4:50 UTC (permalink / raw
To: gentoo-commits
weaver 10/09/20 04:50:54
Modified: ChangeLog
Added: vaal-1.6.ebuild
Log:
Version bump. Addresses boost problems and compilation issues
(Portage version: 2.2_rc61/cvs/Linux x86_64)
Revision Changes Path
1.5 sci-biology/vaal/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/ChangeLog?rev=1.5&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/ChangeLog?rev=1.5&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/ChangeLog?r1=1.4&r2=1.5
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- ChangeLog 14 Feb 2010 19:50:10 -0000 1.4
+++ ChangeLog 20 Sep 2010 04:50:54 -0000 1.5
@@ -1,6 +1,12 @@
# ChangeLog for sci-biology/vaal
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v 1.4 2010/02/14 19:50:10 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v 1.5 2010/09/20 04:50:54 weaver Exp $
+
+*vaal-1.6 (20 Sep 2010)
+
+ 20 Sep 2010; Andrey Kislyuk <weaver@gentoo.org> +vaal-1.6.ebuild,
+ +files/vaal-1.6-respect-flags.patch:
+ Version bump. Addresses boost problems and compilation issues
*vaal-1.2-r1 (14 Feb 2010)
1.1 sci-biology/vaal/vaal-1.6.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild?rev=1.1&content-type=text/plain
Index: vaal-1.6.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild,v 1.1 2010/09/20 04:50:54 weaver Exp $
EAPI="2"
inherit base autotools
DESCRIPTION="A variant ascertainment algorithm that can be used to detect SNPs, indels, and other polymorphisms"
HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
SRC_URI="ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL.${PV}.tgz
ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc"
LICENSE="Whitehead-MIT"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86"
DEPEND=">=dev-libs/boost-1.41.0-r3"
RDEPEND="${DEPEND}"
PATCHES=(
"${FILESDIR}"/${P}-respect-flags.patch
)
S="${WORKDIR}/vaal-33805"
src_prepare() {
base_src_prepare
eautoreconf
}
src_install() {
einstall || die
insinto /usr/share/doc/${PF}
doins "${DISTDIR}/VAAL_manual.doc"
}
^ permalink raw reply [flat|nested] 4+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/vaal: vaal-1.6.ebuild ChangeLog
@ 2010-09-24 15:54 Andrey Kislyuk (weaver)
0 siblings, 0 replies; 4+ messages in thread
From: Andrey Kislyuk (weaver) @ 2010-09-24 15:54 UTC (permalink / raw
To: gentoo-commits
weaver 10/09/24 15:54:59
Modified: vaal-1.6.ebuild ChangeLog
Log:
Drop x86 from keywords
(Portage version: 2.2_rc61/cvs/Linux x86_64)
Revision Changes Path
1.2 sci-biology/vaal/vaal-1.6.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild?r1=1.1&r2=1.2
Index: vaal-1.6.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- vaal-1.6.ebuild 20 Sep 2010 04:50:54 -0000 1.1
+++ vaal-1.6.ebuild 24 Sep 2010 15:54:59 -0000 1.2
@@ -1,6 +1,6 @@
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild,v 1.1 2010/09/20 04:50:54 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild,v 1.2 2010/09/24 15:54:59 weaver Exp $
EAPI="2"
@@ -14,7 +14,7 @@
LICENSE="Whitehead-MIT"
SLOT="0"
IUSE=""
-KEYWORDS="~amd64 ~x86"
+KEYWORDS="~amd64"
DEPEND=">=dev-libs/boost-1.41.0-r3"
RDEPEND="${DEPEND}"
1.6 sci-biology/vaal/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/ChangeLog?rev=1.6&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/ChangeLog?rev=1.6&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/ChangeLog?r1=1.5&r2=1.6
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- ChangeLog 20 Sep 2010 04:50:54 -0000 1.5
+++ ChangeLog 24 Sep 2010 15:54:59 -0000 1.6
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/vaal
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v 1.5 2010/09/20 04:50:54 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v 1.6 2010/09/24 15:54:59 weaver Exp $
+
+ 24 Sep 2010; Andrey Kislyuk <weaver@gentoo.org> vaal-1.6.ebuild:
+ Drop x86 from keywords
*vaal-1.6 (20 Sep 2010)
^ permalink raw reply [flat|nested] 4+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/vaal: vaal-1.6.ebuild ChangeLog
@ 2011-02-11 19:50 Markos Chandras (hwoarang)
0 siblings, 0 replies; 4+ messages in thread
From: Markos Chandras (hwoarang) @ 2011-02-11 19:50 UTC (permalink / raw
To: gentoo-commits
hwoarang 11/02/11 19:50:05
Modified: vaal-1.6.ebuild ChangeLog
Log:
Stable on amd64 wrt bug #353572
(Portage version: 2.1.9.39/cvs/Linux x86_64)
Revision Changes Path
1.3 sci-biology/vaal/vaal-1.6.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild?r1=1.2&r2=1.3
Index: vaal-1.6.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- vaal-1.6.ebuild 24 Sep 2010 15:54:59 -0000 1.2
+++ vaal-1.6.ebuild 11 Feb 2011 19:50:04 -0000 1.3
@@ -1,6 +1,6 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild,v 1.2 2010/09/24 15:54:59 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild,v 1.3 2011/02/11 19:50:04 hwoarang Exp $
EAPI="2"
@@ -14,7 +14,7 @@
LICENSE="Whitehead-MIT"
SLOT="0"
IUSE=""
-KEYWORDS="~amd64"
+KEYWORDS="amd64"
DEPEND=">=dev-libs/boost-1.41.0-r3"
RDEPEND="${DEPEND}"
1.7 sci-biology/vaal/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/ChangeLog?rev=1.7&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/ChangeLog?rev=1.7&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/ChangeLog?r1=1.6&r2=1.7
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -r1.6 -r1.7
--- ChangeLog 24 Sep 2010 15:54:59 -0000 1.6
+++ ChangeLog 11 Feb 2011 19:50:04 -0000 1.7
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/vaal
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v 1.6 2010/09/24 15:54:59 weaver Exp $
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v 1.7 2011/02/11 19:50:04 hwoarang Exp $
+
+ 11 Feb 2011; Markos Chandras <hwoarang@gentoo.org> vaal-1.6.ebuild:
+ Stable on amd64 wrt bug #353572
24 Sep 2010; Andrey Kislyuk <weaver@gentoo.org> vaal-1.6.ebuild:
Drop x86 from keywords
^ permalink raw reply [flat|nested] 4+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/vaal: vaal-1.6.ebuild ChangeLog
@ 2012-06-25 18:42 Kacper Kowalik (xarthisius)
0 siblings, 0 replies; 4+ messages in thread
From: Kacper Kowalik (xarthisius) @ 2012-06-25 18:42 UTC (permalink / raw
To: gentoo-commits
xarthisius 12/06/25 18:42:57
Modified: vaal-1.6.ebuild ChangeLog
Log:
Fix building with gcc-4.7 wrt #423497 by Diego Elio Pettenò <flameeyes@gentoo.org>, drop -O3 -ggdb from CXXFLAGS
(Portage version: 2.2.0_alpha110/cvs/Linux x86_64)
Revision Changes Path
1.4 sci-biology/vaal/vaal-1.6.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild?rev=1.4&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild?rev=1.4&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild?r1=1.3&r2=1.4
Index: vaal-1.6.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- vaal-1.6.ebuild 11 Feb 2011 19:50:04 -0000 1.3
+++ vaal-1.6.ebuild 25 Jun 2012 18:42:57 -0000 1.4
@@ -1,6 +1,6 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild,v 1.3 2011/02/11 19:50:04 hwoarang Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild,v 1.4 2012/06/25 18:42:57 xarthisius Exp $
EAPI="2"
@@ -21,9 +21,10 @@
PATCHES=(
"${FILESDIR}"/${P}-respect-flags.patch
+ "${FILESDIR}"/${P}-gcc47.patch
)
-S="${WORKDIR}/vaal-33805"
+S=${WORKDIR}/vaal-33805
src_prepare() {
base_src_prepare
1.8 sci-biology/vaal/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/ChangeLog?rev=1.8&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/ChangeLog?rev=1.8&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/ChangeLog?r1=1.7&r2=1.8
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -r1.7 -r1.8
--- ChangeLog 11 Feb 2011 19:50:04 -0000 1.7
+++ ChangeLog 25 Jun 2012 18:42:57 -0000 1.8
@@ -1,6 +1,12 @@
# ChangeLog for sci-biology/vaal
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v 1.7 2011/02/11 19:50:04 hwoarang Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v 1.8 2012/06/25 18:42:57 xarthisius Exp $
+
+ 25 Jun 2012; Kacper Kowalik <xarthisius@gentoo.org>
+ +files/vaal-1.6-gcc47.patch, files/vaal-1.6-respect-flags.patch,
+ vaal-1.6.ebuild:
+ Fix building with gcc-4.7 wrt #423497 by Diego Elio Pettenò
+ <flameeyes@gentoo.org>, drop -O3 -ggdb from CXXFLAGS
11 Feb 2011; Markos Chandras <hwoarang@gentoo.org> vaal-1.6.ebuild:
Stable on amd64 wrt bug #353572
^ permalink raw reply [flat|nested] 4+ messages in thread
end of thread, other threads:[~2012-06-25 18:43 UTC | newest]
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2010-09-20 4:50 [gentoo-commits] gentoo-x86 commit in sci-biology/vaal: vaal-1.6.ebuild ChangeLog Andrey Kislyuk (weaver)
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2010-09-24 15:54 Andrey Kislyuk (weaver)
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