* [gentoo-commits] gentoo-x86 commit in sci-chemistry/aria: ChangeLog aria-2.3.1.ebuild
@ 2010-03-20 13:27 Justin Lecher (jlec)
0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher (jlec) @ 2010-03-20 13:27 UTC (permalink / raw
To: gentoo-commits
jlec 10/03/20 13:27:24
Modified: ChangeLog
Added: aria-2.3.1.ebuild
Log:
Version Bump
(Portage version: 2.2_rc67/cvs/Linux x86_64)
Revision Changes Path
1.3 sci-chemistry/aria/ChangeLog
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/aria/ChangeLog?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/aria/ChangeLog?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/aria/ChangeLog?r1=1.2&r2=1.3
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- ChangeLog 7 Mar 2010 09:31:51 -0000 1.2
+++ ChangeLog 20 Mar 2010 13:27:23 -0000 1.3
@@ -1,6 +1,11 @@
# ChangeLog for sci-chemistry/aria
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.2 2010/03/07 09:31:51 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.3 2010/03/20 13:27:23 jlec Exp $
+
+*aria-2.3.1 (20 Mar 2010)
+
+ 20 Mar 2010; Justin Lecher (jlec) <jlec@gentoo.org> +aria-2.3.1.ebuild:
+ Version Bump
07 Mar 2010; Justin Lecher (jlec) <jlec@gentoo.org> aria-2.2_p2.ebuild:
keyworded for *-linux, tested by me
1.1 sci-chemistry/aria/aria-2.3.1.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild?rev=1.1&content-type=text/plain
Index: aria-2.3.1.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild,v 1.1 2010/03/20 13:27:23 jlec Exp $
EAPI="3"
PYTHON_DEPEND="2"
PYTHON_USE_WITH="tk"
inherit base python eutils versionator
MY_P="${PN}$(get_version_component_range 1-2 ${PV})"
DESCRIPTION="Software for automated NOE assignment and NMR structure calculation."
HOMEPAGE="http://aria.pasteur.fr/"
SRC_URI="http://aria.pasteur.fr/archives/${MY_P}.1.tar.gz"
SLOT="0"
LICENSE="cns"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="examples"
RDEPEND="
dev-python/numpy
dev-python/matplotlib[tk]
sci-chemistry/cns[aria,openmp]
>=dev-lang/tk-8.3
>=sci-chemistry/ccpn-2.0.5
>=dev-tcltk/tix-8.1.4"
DEPEND="${RDEPEND}"
RESTRICT="fetch"
S="${WORKDIR}/${MY_P}"
pkg_nofetch(){
einfo "Go to ${HOMEPAGE}, download ${A}"
einfo "and place it in ${DISTDIR}"
}
src_test(){
export CCPNMR_TOP_DIR="${EPREFIX}"/$(python_get_sitedir)
export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
$(PYTHON) check.py || die
}
src_install(){
insinto "$(python_get_sitedir)/${PN}"
doins -r src aria2.py || die "failed to install ${PN}"
insinto "$(python_get_sitedir)/${PN}"/cns
doins -r cns/{protocols,toppar,src/helplib} || die "failed to install cns part"
if use examples; then
insinto /usr/share/${P}/
doins -r examples || die
fi
# ENV
cat >> "${T}"/20aria <<- EOF
ARIA2="${EPREFIX}/$(python_get_sitedir)/${PN}"
EOF
doenvd "${T}"/20aria
# Launch Wrapper
cat >> "${T}"/aria <<- EOF
#!/bin/sh
export CCPNMR_TOP_DIR="${EPREFIX}/$(python_get_sitedir)"
export PYTHONPATH="${EPREFIX}/$(python_get_sitedir)/ccpn/python"
exec "$(PYTHON)" -O "\${ARIA2}"/aria2.py \$@
EOF
dobin "${T}"/aria || die "failed to install wrapper"
dosym aria /usr/bin/aria2
dodoc README || die
}
pkg_postinst() {
python_mod_optimize ${PN}
}
pkg_postrm() {
python_mod_cleanup ${PN}
}
^ permalink raw reply [flat|nested] 3+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-chemistry/aria: ChangeLog aria-2.3.1.ebuild
@ 2010-07-19 6:59 Justin Lecher (jlec)
0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher (jlec) @ 2010-07-19 6:59 UTC (permalink / raw
To: gentoo-commits
jlec 10/07/19 06:59:06
Modified: ChangeLog aria-2.3.1.ebuild
Log:
Fixed DEPS
(Portage version: 2.2_rc67/cvs/Linux x86_64)
Revision Changes Path
1.5 sci-chemistry/aria/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/ChangeLog?rev=1.5&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/ChangeLog?rev=1.5&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/ChangeLog?r1=1.4&r2=1.5
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- ChangeLog 4 Apr 2010 07:06:02 -0000 1.4
+++ ChangeLog 19 Jul 2010 06:59:06 -0000 1.5
@@ -1,6 +1,9 @@
# ChangeLog for sci-chemistry/aria
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.4 2010/04/04 07:06:02 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.5 2010/07/19 06:59:06 jlec Exp $
+
+ 19 Jul 2010; Justin Lecher <jlec@gentoo.org> aria-2.3.1.ebuild:
+ Fixed DEPS
04 Apr 2010; Justin Lecher <jlec@gentoo.org> Manifest:
distfile digest fix
1.3 sci-chemistry/aria/aria-2.3.1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild?r1=1.2&r2=1.3
Index: aria-2.3.1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- aria-2.3.1.ebuild 20 Mar 2010 13:36:56 -0000 1.2
+++ aria-2.3.1.ebuild 19 Jul 2010 06:59:06 -0000 1.3
@@ -1,6 +1,6 @@
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild,v 1.2 2010/03/20 13:36:56 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild,v 1.3 2010/07/19 06:59:06 jlec Exp $
EAPI="3"
PYTHON_DEPEND="2"
@@ -20,6 +20,8 @@
IUSE="examples"
RDEPEND="
+ sci-chemistry/clashlist
+ sci-chemistry/procheck
dev-python/numpy
dev-python/matplotlib[tk]
>=sci-chemistry/cns-1.2.1-r3[aria,openmp]
^ permalink raw reply [flat|nested] 3+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-chemistry/aria: ChangeLog aria-2.3.1.ebuild
@ 2010-07-22 7:08 Justin Lecher (jlec)
0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher (jlec) @ 2010-07-22 7:08 UTC (permalink / raw
To: gentoo-commits
jlec 10/07/22 07:08:45
Modified: ChangeLog aria-2.3.1.ebuild
Log:
Added clashscore as DEP
(Portage version: 2.2_rc67/cvs/Linux x86_64)
Revision Changes Path
1.6 sci-chemistry/aria/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/ChangeLog?rev=1.6&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/ChangeLog?rev=1.6&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/ChangeLog?r1=1.5&r2=1.6
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- ChangeLog 19 Jul 2010 06:59:06 -0000 1.5
+++ ChangeLog 22 Jul 2010 07:08:44 -0000 1.6
@@ -1,6 +1,9 @@
# ChangeLog for sci-chemistry/aria
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.5 2010/07/19 06:59:06 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.6 2010/07/22 07:08:44 jlec Exp $
+
+ 22 Jul 2010; Justin Lecher <jlec@gentoo.org> aria-2.3.1.ebuild:
+ Added clashscore as DEP
19 Jul 2010; Justin Lecher <jlec@gentoo.org> aria-2.3.1.ebuild:
Fixed DEPS
1.4 sci-chemistry/aria/aria-2.3.1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild?rev=1.4&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild?rev=1.4&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild?r1=1.3&r2=1.4
Index: aria-2.3.1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- aria-2.3.1.ebuild 19 Jul 2010 06:59:06 -0000 1.3
+++ aria-2.3.1.ebuild 22 Jul 2010 07:08:44 -0000 1.4
@@ -1,6 +1,6 @@
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild,v 1.3 2010/07/19 06:59:06 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild,v 1.4 2010/07/22 07:08:44 jlec Exp $
EAPI="3"
PYTHON_DEPEND="2"
@@ -22,6 +22,7 @@
RDEPEND="
sci-chemistry/clashlist
sci-chemistry/procheck
+ sci-libs/clashscore-db
dev-python/numpy
dev-python/matplotlib[tk]
>=sci-chemistry/cns-1.2.1-r3[aria,openmp]
^ permalink raw reply [flat|nested] 3+ messages in thread
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