* [gentoo-commits] gentoo-x86 commit in sci-biology/probcons: ChangeLog probcons-1.12-r1.ebuild
@ 2010-06-15 13:27 Justin Lecher (jlec)
0 siblings, 0 replies; 4+ messages in thread
From: Justin Lecher (jlec) @ 2010-06-15 13:27 UTC (permalink / raw
To: gentoo-commits
jlec 10/06/15 13:27:50
Modified: ChangeLog
Added: probcons-1.12-r1.ebuild
Log:
QA and keyworded for linux prefix
(Portage version: 2.2_rc67/cvs/Linux x86_64)
Revision Changes Path
1.10 sci-biology/probcons/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/ChangeLog?rev=1.10&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/ChangeLog?rev=1.10&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/ChangeLog?r1=1.9&r2=1.10
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/probcons/ChangeLog,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -r1.9 -r1.10
--- ChangeLog 16 Aug 2009 18:18:18 -0000 1.9
+++ ChangeLog 15 Jun 2010 13:27:50 -0000 1.10
@@ -1,6 +1,12 @@
# ChangeLog for sci-biology/probcons
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/probcons/ChangeLog,v 1.9 2009/08/16 18:18:18 dberkholz Exp $
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/probcons/ChangeLog,v 1.10 2010/06/15 13:27:50 jlec Exp $
+
+*probcons-1.12-r1 (15 Jun 2010)
+
+ 15 Jun 2010; Justin Lecher <jlec@gentoo.org> +probcons-1.12-r1.ebuild,
+ files/probcons-1.12-cxxflags.patch:
+ QA and keyworded for linux prefix
16 Aug 2009; Donnie Berkholz <dberkholz@gentoo.org>; probcons-1.12.ebuild:
Keyword ~amd64.
1.1 sci-biology/probcons/probcons-1.12-r1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/probcons-1.12-r1.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/probcons-1.12-r1.ebuild?rev=1.1&content-type=text/plain
Index: probcons-1.12-r1.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/probcons/probcons-1.12-r1.ebuild,v 1.1 2010/06/15 13:27:50 jlec Exp $
EAPI="3"
inherit eutils toolchain-funcs
MY_P="${PN}_v${PV/./_}"
DESCRIPTION="Probabilistic Consistency-based Multiple Alignment of Amino Acid Sequences"
HOMEPAGE="http://probcons.stanford.edu/"
SRC_URI="http://probcons.stanford.edu/${MY_P}.tar.gz"
LICENSE="public-domain"
SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE=""
# Gnuplot is explicitly runtime-only, it's run using system()
RDEPEND="sci-visualization/gnuplot"
DEPEND=""
S="${WORKDIR}/${PN}"
src_prepare() {
epatch "${FILESDIR}"/${P}-cxxflags.patch
epatch "${FILESDIR}"/gcc-4.3.patch
}
src_compile() {
emake \
CXX="$(tc-getCXX)" \
OPT_CXXFLAGS="${CXXFLAGS}" \
|| die "make failed"
}
src_install() {
dobin probcons project makegnuplot || die "failed to install"
# Overlap with imagemagick
newbin compare compare-probcons || die "failed to install compare"
dodoc README || die
}
pkg_postinst() {
ewarn "The 'compare' binary is installed as 'compare-probcons'"
ewarn "to avoid overlap with other packages."
einfo "You may also want to download the user manual"
einfo "from http://probcons.stanford.edu/manual.pdf"
}
^ permalink raw reply [flat|nested] 4+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/probcons: ChangeLog probcons-1.12-r1.ebuild
@ 2010-07-16 9:51 Christian Faulhammer (fauli)
0 siblings, 0 replies; 4+ messages in thread
From: Christian Faulhammer (fauli) @ 2010-07-16 9:51 UTC (permalink / raw
To: gentoo-commits
fauli 10/07/16 09:51:06
Modified: ChangeLog probcons-1.12-r1.ebuild
Log:
stable x86, bug 328427
(Portage version: 2.1.8.3/cvs/Linux i686)
Revision Changes Path
1.12 sci-biology/probcons/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/ChangeLog?rev=1.12&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/ChangeLog?rev=1.12&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/ChangeLog?r1=1.11&r2=1.12
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/probcons/ChangeLog,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -r1.11 -r1.12
--- ChangeLog 17 Jun 2010 09:46:52 -0000 1.11
+++ ChangeLog 16 Jul 2010 09:51:06 -0000 1.12
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/probcons
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/probcons/ChangeLog,v 1.11 2010/06/17 09:46:52 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/probcons/ChangeLog,v 1.12 2010/07/16 09:51:06 fauli Exp $
+
+ 16 Jul 2010; Christian Faulhammer <fauli@gentoo.org>
+ probcons-1.12-r1.ebuild:
+ stable x86, bug 328427
17 Jun 2010; Justin Lecher <jlec@gentoo.org> probcons-1.10.ebuild,
probcons-1.12.ebuild, probcons-1.12-r1.ebuild:
1.3 sci-biology/probcons/probcons-1.12-r1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/probcons-1.12-r1.ebuild?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/probcons-1.12-r1.ebuild?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/probcons-1.12-r1.ebuild?r1=1.2&r2=1.3
Index: probcons-1.12-r1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/probcons/probcons-1.12-r1.ebuild,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- probcons-1.12-r1.ebuild 17 Jun 2010 09:46:52 -0000 1.2
+++ probcons-1.12-r1.ebuild 16 Jul 2010 09:51:06 -0000 1.3
@@ -1,6 +1,6 @@
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/probcons/probcons-1.12-r1.ebuild,v 1.2 2010/06/17 09:46:52 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/probcons/probcons-1.12-r1.ebuild,v 1.3 2010/07/16 09:51:06 fauli Exp $
EAPI="3"
@@ -14,7 +14,7 @@
LICENSE="public-domain"
SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~amd64 x86 ~amd64-linux ~x86-linux"
IUSE=""
# Gnuplot is explicitly runtime-only, it's run using system()
^ permalink raw reply [flat|nested] 4+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/probcons: ChangeLog probcons-1.12-r1.ebuild
@ 2010-07-16 22:01 Markos Chandras (hwoarang)
0 siblings, 0 replies; 4+ messages in thread
From: Markos Chandras (hwoarang) @ 2010-07-16 22:01 UTC (permalink / raw
To: gentoo-commits
hwoarang 10/07/16 22:01:47
Modified: ChangeLog probcons-1.12-r1.ebuild
Log:
Stable on amd64 wrt bug #328427
(Portage version: 2.2_rc67/cvs/Linux x86_64)
Revision Changes Path
1.13 sci-biology/probcons/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/ChangeLog?rev=1.13&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/ChangeLog?rev=1.13&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/ChangeLog?r1=1.12&r2=1.13
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/probcons/ChangeLog,v
retrieving revision 1.12
retrieving revision 1.13
diff -u -r1.12 -r1.13
--- ChangeLog 16 Jul 2010 09:51:06 -0000 1.12
+++ ChangeLog 16 Jul 2010 22:01:47 -0000 1.13
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/probcons
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/probcons/ChangeLog,v 1.12 2010/07/16 09:51:06 fauli Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/probcons/ChangeLog,v 1.13 2010/07/16 22:01:47 hwoarang Exp $
+
+ 16 Jul 2010; Markos Chandras <hwoarang@gentoo.org>
+ probcons-1.12-r1.ebuild:
+ Stable on amd64 wrt bug #328427
16 Jul 2010; Christian Faulhammer <fauli@gentoo.org>
probcons-1.12-r1.ebuild:
1.4 sci-biology/probcons/probcons-1.12-r1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/probcons-1.12-r1.ebuild?rev=1.4&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/probcons-1.12-r1.ebuild?rev=1.4&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/probcons-1.12-r1.ebuild?r1=1.3&r2=1.4
Index: probcons-1.12-r1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/probcons/probcons-1.12-r1.ebuild,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- probcons-1.12-r1.ebuild 16 Jul 2010 09:51:06 -0000 1.3
+++ probcons-1.12-r1.ebuild 16 Jul 2010 22:01:47 -0000 1.4
@@ -1,6 +1,6 @@
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/probcons/probcons-1.12-r1.ebuild,v 1.3 2010/07/16 09:51:06 fauli Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/probcons/probcons-1.12-r1.ebuild,v 1.4 2010/07/16 22:01:47 hwoarang Exp $
EAPI="3"
@@ -14,7 +14,7 @@
LICENSE="public-domain"
SLOT="0"
-KEYWORDS="~amd64 x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
IUSE=""
# Gnuplot is explicitly runtime-only, it's run using system()
^ permalink raw reply [flat|nested] 4+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/probcons: ChangeLog probcons-1.12-r1.ebuild
@ 2011-06-13 11:17 Justin Lecher (jlec)
0 siblings, 0 replies; 4+ messages in thread
From: Justin Lecher (jlec) @ 2011-06-13 11:17 UTC (permalink / raw
To: gentoo-commits
jlec 11/06/13 11:17:41
Modified: ChangeLog probcons-1.12-r1.ebuild
Log:
Make it gcc46 resistant, #370471
(Portage version: 2.2.0_alpha40/cvs/Linux x86_64)
Revision Changes Path
1.14 sci-biology/probcons/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/ChangeLog?rev=1.14&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/ChangeLog?rev=1.14&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/ChangeLog?r1=1.13&r2=1.14
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/probcons/ChangeLog,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -r1.13 -r1.14
--- ChangeLog 16 Jul 2010 22:01:47 -0000 1.13
+++ ChangeLog 13 Jun 2011 11:17:41 -0000 1.14
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/probcons
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/probcons/ChangeLog,v 1.13 2010/07/16 22:01:47 hwoarang Exp $
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/probcons/ChangeLog,v 1.14 2011/06/13 11:17:41 jlec Exp $
+
+ 13 Jun 2011; Justin Lecher <jlec@gentoo.org> probcons-1.12-r1.ebuild,
+ +files/probcons-1.12-gcc-4.6.patch:
+ Make it gcc46 resistant, #370471
16 Jul 2010; Markos Chandras <hwoarang@gentoo.org>
probcons-1.12-r1.ebuild:
1.5 sci-biology/probcons/probcons-1.12-r1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/probcons-1.12-r1.ebuild?rev=1.5&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/probcons-1.12-r1.ebuild?rev=1.5&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/probcons-1.12-r1.ebuild?r1=1.4&r2=1.5
Index: probcons-1.12-r1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/probcons/probcons-1.12-r1.ebuild,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- probcons-1.12-r1.ebuild 16 Jul 2010 22:01:47 -0000 1.4
+++ probcons-1.12-r1.ebuild 13 Jun 2011 11:17:41 -0000 1.5
@@ -1,8 +1,8 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/probcons/probcons-1.12-r1.ebuild,v 1.4 2010/07/16 22:01:47 hwoarang Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/probcons/probcons-1.12-r1.ebuild,v 1.5 2011/06/13 11:17:41 jlec Exp $
-EAPI="3"
+EAPI=3
inherit eutils toolchain-funcs
@@ -26,8 +26,10 @@
S="${WORKDIR}/${PN}"
src_prepare() {
- epatch "${FILESDIR}"/${P}-cxxflags.patch
- epatch "${FILESDIR}"/gcc-4.3.patch
+ epatch \
+ "${FILESDIR}"/${P}-cxxflags.patch \
+ "${FILESDIR}"/gcc-4.3.patch \
+ "${FILESDIR}"/${P}-gcc-4.6.patch
}
src_compile() {
^ permalink raw reply [flat|nested] 4+ messages in thread
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