[gentoo-commits] gentoo-x86 commit in sci-chemistry/refmac: ChangeLog refmac-5.6.0081.ebuild refmac-5.6.0077.ebuild refmac-5.6.0079.ebuild refmac-5.6.0078.ebuild

[gentoo-commits] gentoo-x86 commit in sci-chemistry/refmac: ChangeLog refmac-5.6.0081.ebuild refmac-5.6.0077.ebuild refmac-5.6.0079.ebuild refmac-5.6.0078.ebuild

[Justin Lecher (jlec)]

jlec        10/07/06 06:34:38

  Modified:             ChangeLog
  Added:                refmac-5.6.0081.ebuild
  Removed:              refmac-5.6.0077.ebuild refmac-5.6.0079.ebuild
                        refmac-5.6.0078.ebuild
  Log:
  Removed old, Version Bump
  (Portage version: 2.2_rc67/cvs/Linux x86_64)

Revision  Changes    Path
1.14                 sci-chemistry/refmac/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/ChangeLog?rev=1.14&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/ChangeLog?rev=1.14&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/ChangeLog?r1=1.13&r2=1.14

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -r1.13 -r1.14
--- ChangeLog	3 Jul 2010 08:33:57 -0000	1.13
+++ ChangeLog	6 Jul 2010 06:34:38 -0000	1.14
@@ -1,6 +1,12 @@
 # ChangeLog for sci-chemistry/refmac
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.13 2010/07/03 08:33:57 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.14 2010/07/06 06:34:38 jlec Exp $
+
+*refmac-5.6.0081 (06 Jul 2010)
+
+  06 Jul 2010; Justin Lecher <jlec@gentoo.org> -refmac-5.6.0077.ebuild,
+  -refmac-5.6.0078.ebuild, -refmac-5.6.0079.ebuild, +refmac-5.6.0081.ebuild:
+  Removed old, Version Bump
 
 *refmac-5.6.0080 (03 Jul 2010)
 



1.1                  sci-chemistry/refmac/refmac-5.6.0081.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0081.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0081.ebuild?rev=1.1&content-type=text/plain

Index: refmac-5.6.0081.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0081.ebuild,v 1.1 2010/07/06 06:34:38 jlec Exp $

EAPI="2"

inherit fortran base toolchain-funcs versionator

MY_PV="$(get_version_component_range 1-2)_source_v${PV}"

DESCRIPTION="Macromolecular crystallographic refinement program"
HOMEPAGE="http://www.ysbl.york.ac.uk/~garib/refmac/"
SRC_URI="${HOMEPAGE}data/refmac_experimental/${PN}${MY_PV}.tar.gz
	test? ( http://dev.gentooexperimental.org/~jlec/distfiles/test-framework.tar.gz )"

SLOT="0"
LICENSE="ccp4"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="test"

RDEPEND="
	sci-libs/ccp4-libs
	sci-libs/mmdb
	>sci-libs/monomer-db-1
	virtual/blas
	virtual/lapack"
DEPEND="${RDEPEND}"

S="${WORKDIR}"

PATCHES=(
	"${FILESDIR}"/${PV/81/80}-allow-dynamic-linking.patch
	)

src_prepare() {
	base_src_prepare
	use test && epatch "${FILESDIR}"/5.5-test.log.patch
}

src_compile() {
	emake \
		FC=$(tc-getFC) \
		CC=$(tc-getCC) \
		CXX=$(tc-getCXX) \
		COPTIM="${CFLAGS}" \
		FOPTIM="${FFLAGS:- -O2}" \
		VERSION="" \
		XFFLAGS="-fno-second-underscore" \
		LLIBCCP="-lccp4f -lccp4c -lccif -lmmdb -lstdc++" \
		LLIBLAPACK="$(pkg-config --libs lapack blas)" \
		|| die
}

src_test() {
	einfo "Starting tests ..."
	export PATH="${WORKDIR}/test-framework/scripts:${S}:${PATH}"
	export CCP4_TEST="${WORKDIR}"/test-framework
	export CCP4_SCR="${T}"
	ln -sf refmac "${S}"/refmac5
	sed '/^ANISOU/d' -i ${CCP4_TEST}/data/pdb/1vr7.pdb
	ccp4-run-thorough-tests -v test_refmac5 || die
}

src_install() {
	for i in refmac libcheck; do
		exeinto /usr/libexec/ccp4/bin/
		doexe ${i} || die
		dosym ../libexec/ccp4/bin/${i} /usr/bin/${i}
	done
	dosym refmac /usr/bin/refmac5 || die
}