* [gentoo-commits] gentoo-x86 commit in sci-biology/probcons/files: probcons-1.12-cxxflags.patch
@ 2010-06-15 13:27 Justin Lecher (jlec)
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From: Justin Lecher (jlec) @ 2010-06-15 13:27 UTC (permalink / raw
To: gentoo-commits
jlec 10/06/15 13:27:50
Modified: probcons-1.12-cxxflags.patch
Log:
QA and keyworded for linux prefix
(Portage version: 2.2_rc67/cvs/Linux x86_64)
Revision Changes Path
1.2 sci-biology/probcons/files/probcons-1.12-cxxflags.patch
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/files/probcons-1.12-cxxflags.patch?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/files/probcons-1.12-cxxflags.patch?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/probcons/files/probcons-1.12-cxxflags.patch?r1=1.1&r2=1.2
Index: probcons-1.12-cxxflags.patch
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/probcons/files/probcons-1.12-cxxflags.patch,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- probcons-1.12-cxxflags.patch 6 Oct 2007 11:20:02 -0000 1.1
+++ probcons-1.12-cxxflags.patch 15 Jun 2010 13:27:50 -0000 1.2
@@ -1,7 +1,8 @@
-diff -Naur probcons/Makefile probcons-new/Makefile
---- probcons/Makefile 2007-04-03 13:39:23.000000000 -0400
-+++ probcons-new/Makefile 2007-10-06 07:07:10.000000000 -0400
-@@ -15,6 +15,8 @@
+diff --git a/Makefile b/Makefile
+index 75fc47a..4a19140 100644
+--- a/Makefile
++++ b/Makefile
+@@ -15,6 +15,8 @@ CXX = g++
# c) RELEASE mode
################################################################################
@@ -10,7 +11,7 @@
OTHERFLAGS = -DNumInsertStates=2 -DVERSION="1.12"
# debug mode
-@@ -25,7 +27,7 @@
+@@ -25,7 +27,7 @@ OTHERFLAGS = -DNumInsertStates=2 -DVERSION="1.12"
# release mode
#CXXFLAGS = -O3 -W -Wall -pedantic -DNDEBUG $(OTHERFLAGS) -mmmx -msse -msse2 -mfpmath=sse -march=pentium4 -mcpu=pentium4 -funroll-loops -fomit-frame-pointer
@@ -19,3 +20,28 @@
################################################################################
# 3) Dependencies
+@@ -37,19 +39,19 @@ TARGETS = probcons compare project makegnuplot
+ all : $(TARGETS)
+
+ probcons : MultiSequence.h ProbabilisticModel.h ScoreType.h Sequence.h FileBuffer.h SparseMatrix.h EvolutionaryTree.h Defaults.h SafeVector.h Main.cc
+- $(CXX) $(CXXFLAGS) -lm -o probcons Main.cc
++ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o probcons Main.cc -lm
+
+ compare : MultiSequence.h Sequence.h FileBuffer.h SafeVector.h CompareToRef.cc
+- $(CXX) $(CXXFLAGS) -o compare CompareToRef.cc
++ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o compare CompareToRef.cc
+
+ fixref : MultiSequence.h ProbabilisticModel.h ScoreType.h Sequence.h FileBuffer.h SparseMatrix.h EvolutionaryTree.h Defaults.h SafeVector.h FixRef.cc
+- $(CXX) $(CXXFLAGS) -o fixref FixRef.cc
++ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o fixref FixRef.cc
+
+ project : MultiSequence.h Sequence.h SafeVector.h ProjectPairwise.cc
+- $(CXX) $(CXXFLAGS) -o project ProjectPairwise.cc
++ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o project ProjectPairwise.cc
+
+ makegnuplot : MakeGnuPlot.cc
+- $(CXX) $(CXXFLAGS) -o makegnuplot MakeGnuPlot.cc
++ $(CXX) $(LDFLAGS) $(CXXFLAGS) -o makegnuplot MakeGnuPlot.cc
+
+ .PHONY : clean
+ clean:
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2010-06-15 13:27 [gentoo-commits] gentoo-x86 commit in sci-biology/probcons/files: probcons-1.12-cxxflags.patch Justin Lecher (jlec)
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