* [gentoo-commits] gentoo-x86 commit in sci-biology/velvet: velvet-0.7.62.ebuild ChangeLog
@ 2010-05-05 7:14 Andrey Kislyuk (weaver)
0 siblings, 0 replies; 2+ messages in thread
From: Andrey Kislyuk (weaver) @ 2010-05-05 7:14 UTC (permalink / raw
To: gentoo-commits
weaver 10/05/05 07:14:47
Modified: ChangeLog
Added: velvet-0.7.62.ebuild
Log:
Version bump
(Portage version: 2.2_rc67/cvs/Linux x86_64)
Revision Changes Path
1.10 sci-biology/velvet/ChangeLog
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/velvet/ChangeLog?rev=1.10&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/velvet/ChangeLog?rev=1.10&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/velvet/ChangeLog?r1=1.9&r2=1.10
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -r1.9 -r1.10
--- ChangeLog 31 Oct 2009 17:57:32 -0000 1.9
+++ ChangeLog 5 May 2010 07:14:47 -0000 1.10
@@ -1,6 +1,11 @@
# ChangeLog for sci-biology/velvet
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.9 2009/10/31 17:57:32 maekke Exp $
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.10 2010/05/05 07:14:47 weaver Exp $
+
+*velvet-0.7.62 (05 May 2010)
+
+ 05 May 2010; Andrey Kislyuk <weaver@gentoo.org> +velvet-0.7.62.ebuild:
+ Version bump
31 Oct 2009; Markus Meier <maekke@gentoo.org> velvet-0.7.55.ebuild:
amd64/x86 stable, bug #290936
1.1 sci-biology/velvet/velvet-0.7.62.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/velvet/velvet-0.7.62.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/velvet/velvet-0.7.62.ebuild?rev=1.1&content-type=text/plain
Index: velvet-0.7.62.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/velvet-0.7.62.ebuild,v 1.1 2010/05/05 07:14:47 weaver Exp $
EAPI="2"
MY_P="${PN}_${PV}"
DESCRIPTION="A sequence assembler for very short reads"
HOMEPAGE="http://www.ebi.ac.uk/~zerbino/velvet/"
SRC_URI="http://www.ebi.ac.uk/~zerbino/velvet/${MY_P}.tgz"
LICENSE="GPL-2"
SLOT="0"
IUSE="-doc"
KEYWORDS="~amd64 ~x86"
DEPEND="doc? ( virtual/latex-base )"
RDEPEND=""
S="${WORKDIR}/${MY_P}"
src_prepare() {
rm -rf "${S}"/third-party/zlib*
sed -i -e '/\(CFLAGS\|LDFLAGS\|Z_LIB_DIR\|Z_LIB_FILES\) *= */d' \
-e '1 a CFLAGS+= -Wall' -e '1 a LDFLAGS+= -lm -lz' \
-e '/default :/ s/zlib//' -e '/color :/ s/zlib//' \
-e '/obj:/ s/zlib//' -e '/obj_de:/ s/zlib//' \
"${S}"/Makefile || die
use doc || sed -i -e '/default :/ s/doc//' "${S}"/Makefile || die
sed -i -e '/zlib.h/d' -e '1 i #include <zlib.h>' "${S}"/src/readSet.c || die
}
src_compile() {
MAKE_XOPTS=""
if [[ $VELVET_MAXKMERLENGTH != "" ]]; then MAKE_XOPTS="$MAKE_XOPTS MAXKMERLENGTH=$VELVET_MAXKMERLENGTH"; fi
if [[ $VELVET_CATEGORIES != "" ]]; then MAKE_XOPTS="$MAKE_XOPTS CATEGORIES=$VELVET_CATEGORIES"; fi
emake -j1 $MAKE_XOPTS || die
emake -j1 $MAKE_XOPTS color || die
}
src_install() {
dobin velvet{g,h,g_de,h_de} || die
insinto /usr/share/${PN}
doins -r contrib || die
dodoc Manual.pdf CREDITS.txt
}
pkg_postinst() {
elog "To adjust the MAXKMERLENGTH or CATEGORIES parameters as described in the manual,"
elog "please set the variables VELVET_MAXKMERLENGTH or VELVET_CATEGORIES in your"
elog "environment or /etc/make.conf, then re-emerge the package. For example:"
elog " VELVET_MAXKMERLENGTH=NN emerge [options] velvet"
}
^ permalink raw reply [flat|nested] 2+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/velvet: velvet-0.7.62.ebuild ChangeLog
@ 2010-06-20 18:05 Kacper Kowalik (xarthisius)
0 siblings, 0 replies; 2+ messages in thread
From: Kacper Kowalik (xarthisius) @ 2010-06-20 18:05 UTC (permalink / raw
To: gentoo-commits
xarthisius 10/06/20 18:05:08
Modified: velvet-0.7.62.ebuild ChangeLog
Log:
Fix parallel build, respect FLAGS, fix --as-needed issues wrt bug 277938. Thanks Diego for reporting.
(Portage version: 2.1.8.3/cvs/Linux x86_64)
Revision Changes Path
1.2 sci-biology/velvet/velvet-0.7.62.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/velvet/velvet-0.7.62.ebuild?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/velvet/velvet-0.7.62.ebuild?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/velvet/velvet-0.7.62.ebuild?r1=1.1&r2=1.2
Index: velvet-0.7.62.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/velvet/velvet-0.7.62.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- velvet-0.7.62.ebuild 5 May 2010 07:14:47 -0000 1.1
+++ velvet-0.7.62.ebuild 20 Jun 2010 18:05:05 -0000 1.2
@@ -1,10 +1,12 @@
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/velvet-0.7.62.ebuild,v 1.1 2010/05/05 07:14:47 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/velvet-0.7.62.ebuild,v 1.2 2010/06/20 18:05:05 xarthisius Exp $
EAPI="2"
-MY_P="${PN}_${PV}"
+inherit eutils toolchain-funcs
+
+MY_P=${PN}_${PV}
DESCRIPTION="A sequence assembler for very short reads"
HOMEPAGE="http://www.ebi.ac.uk/~zerbino/velvet/"
@@ -18,32 +20,27 @@
DEPEND="doc? ( virtual/latex-base )"
RDEPEND=""
-S="${WORKDIR}/${MY_P}"
+S=${WORKDIR}/${MY_P}
src_prepare() {
- rm -rf "${S}"/third-party/zlib*
- sed -i -e '/\(CFLAGS\|LDFLAGS\|Z_LIB_DIR\|Z_LIB_FILES\) *= */d' \
- -e '1 a CFLAGS+= -Wall' -e '1 a LDFLAGS+= -lm -lz' \
- -e '/default :/ s/zlib//' -e '/color :/ s/zlib//' \
- -e '/obj:/ s/zlib//' -e '/obj_de:/ s/zlib//' \
- "${S}"/Makefile || die
+ epatch "${FILESDIR}"/${P}-gentoo.diff
use doc || sed -i -e '/default :/ s/doc//' "${S}"/Makefile || die
- sed -i -e '/zlib.h/d' -e '1 i #include <zlib.h>' "${S}"/src/readSet.c || die
}
src_compile() {
+ tc-export CC
MAKE_XOPTS=""
if [[ $VELVET_MAXKMERLENGTH != "" ]]; then MAKE_XOPTS="$MAKE_XOPTS MAXKMERLENGTH=$VELVET_MAXKMERLENGTH"; fi
if [[ $VELVET_CATEGORIES != "" ]]; then MAKE_XOPTS="$MAKE_XOPTS CATEGORIES=$VELVET_CATEGORIES"; fi
- emake -j1 $MAKE_XOPTS || die
- emake -j1 $MAKE_XOPTS color || die
+ emake $MAKE_XOPTS || die
+ emake $MAKE_XOPTS color || die
}
src_install() {
dobin velvet{g,h,g_de,h_de} || die
insinto /usr/share/${PN}
doins -r contrib || die
- dodoc Manual.pdf CREDITS.txt
+ dodoc Manual.pdf CREDITS.txt ChangeLog || die
}
pkg_postinst() {
1.11 sci-biology/velvet/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/velvet/ChangeLog?rev=1.11&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/velvet/ChangeLog?rev=1.11&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/velvet/ChangeLog?r1=1.10&r2=1.11
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -r1.10 -r1.11
--- ChangeLog 5 May 2010 07:14:47 -0000 1.10
+++ ChangeLog 20 Jun 2010 18:05:05 -0000 1.11
@@ -1,6 +1,11 @@
# ChangeLog for sci-biology/velvet
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.10 2010/05/05 07:14:47 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.11 2010/06/20 18:05:05 xarthisius Exp $
+
+ 20 Jun 2010; Kacper Kowalik <xarthisius@gentoo.org> velvet-0.7.62.ebuild,
+ +files/velvet-0.7.62-gentoo.diff:
+ Fix parallel build, respect FLAGS, fix --as-needed issues wrt bug 277938.
+ Thanks Diego for reporting.
*velvet-0.7.62 (05 May 2010)
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2010-06-20 18:05 Kacper Kowalik (xarthisius)
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