* [gentoo-commits] proj/sci:master commit in: sci-biology/longstitch/
@ 2021-10-18 11:25 Martin Mokrejs
0 siblings, 0 replies; 4+ messages in thread
From: Martin Mokrejs @ 2021-10-18 11:25 UTC (permalink / raw
To: gentoo-commits
commit: 4f86aedbcbd2669eb91f62364c7661a384629e11
Author: Martin Mokrejs <mmokrejs <AT> gmail <DOT> com>
AuthorDate: Mon Oct 18 11:25:09 2021 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Oct 18 11:25:09 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4f86aedb
sci-biology/longstitch: new package
A simple Makefile to run all the dependencies at once.
Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Martin Mokrejs <mmokrejs <AT> gmail.com>
sci-biology/longstitch/longstitch-1.0.1.ebuild | 28 ++++++++++++++++++++++++++
sci-biology/longstitch/metadata.xml | 12 +++++++++++
2 files changed, 40 insertions(+)
diff --git a/sci-biology/longstitch/longstitch-1.0.1.ebuild b/sci-biology/longstitch/longstitch-1.0.1.ebuild
new file mode 100644
index 000000000..787c3219b
--- /dev/null
+++ b/sci-biology/longstitch/longstitch-1.0.1.ebuild
@@ -0,0 +1,28 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+DESCRIPTION="Scaffold genome assemblies by Chromium/PacBio/Nanopore reads"
+HOMEPAGE="https://github.com/bcgsc/LongStitch"
+SRC_URI="https://github.com/bcgsc/LongStitch/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+RESTRICT="test"
+
+RDEPEND="
+ sci-biology/abyss
+ sci-biology/tigmint
+ sci-biology/LINKS
+ sci-biology/samtools
+"
+
+S="${WORKDIR}"/LongStitch-"${PV}"
+
+src_install(){
+ dobin longstitch
+ dodoc README.md LongStitch_overview.pdf
+}
diff --git a/sci-biology/longstitch/metadata.xml b/sci-biology/longstitch/metadata.xml
new file mode 100644
index 000000000..138cb7705
--- /dev/null
+++ b/sci-biology/longstitch/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="person">
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>sci-biology@gentoo.org</email>
+ <name>Gentoo Biology Project</name>
+ </maintainer>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/longstitch/
@ 2021-11-30 13:24 Andrew Ammerlaan
0 siblings, 0 replies; 4+ messages in thread
From: Andrew Ammerlaan @ 2021-11-30 13:24 UTC (permalink / raw
To: gentoo-commits
commit: a4e41f998422ae78af4f26416f4c4a0239ddf1be
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue Nov 30 13:24:23 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue Nov 30 13:24:23 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a4e41f99
sci-biology/longstitch: drpp keywords, keywords on LINKS dropped
Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/longstitch/longstitch-1.0.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/longstitch/longstitch-1.0.1.ebuild b/sci-biology/longstitch/longstitch-1.0.1.ebuild
index 787c3219b..6cd035d86 100644
--- a/sci-biology/longstitch/longstitch-1.0.1.ebuild
+++ b/sci-biology/longstitch/longstitch-1.0.1.ebuild
@@ -9,7 +9,7 @@ SRC_URI="https://github.com/bcgsc/LongStitch/archive/refs/tags/v${PV}.tar.gz ->
LICENSE="GPL-3"
SLOT="0"
-KEYWORDS="~amd64 ~x86"
+KEYWORDS=""
RESTRICT="test"
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/longstitch/
@ 2022-01-25 13:32 Andrew Ammerlaan
0 siblings, 0 replies; 4+ messages in thread
From: Andrew Ammerlaan @ 2022-01-25 13:32 UTC (permalink / raw
To: gentoo-commits
commit: 0249946944e297c609b8cec2586fdeb9c3639c9a
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue Jan 25 13:32:08 2022 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue Jan 25 13:32:08 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=02499469
sci-biology/longstitch: add keywords
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/longstitch/longstitch-1.0.1.ebuild | 9 ++++-----
1 file changed, 4 insertions(+), 5 deletions(-)
diff --git a/sci-biology/longstitch/longstitch-1.0.1.ebuild b/sci-biology/longstitch/longstitch-1.0.1.ebuild
index 6cd035d86..b14bdee87 100644
--- a/sci-biology/longstitch/longstitch-1.0.1.ebuild
+++ b/sci-biology/longstitch/longstitch-1.0.1.ebuild
@@ -1,15 +1,16 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=7
+EAPI=8
DESCRIPTION="Scaffold genome assemblies by Chromium/PacBio/Nanopore reads"
HOMEPAGE="https://github.com/bcgsc/LongStitch"
SRC_URI="https://github.com/bcgsc/LongStitch/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
+S="${WORKDIR}/LongStitch-${PV}"
LICENSE="GPL-3"
SLOT="0"
-KEYWORDS=""
+KEYWORDS="~amd64"
RESTRICT="test"
@@ -20,8 +21,6 @@ RDEPEND="
sci-biology/samtools
"
-S="${WORKDIR}"/LongStitch-"${PV}"
-
src_install(){
dobin longstitch
dodoc README.md LongStitch_overview.pdf
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/longstitch/
@ 2025-05-06 13:53 Alexander Puck Neuwirth
0 siblings, 0 replies; 4+ messages in thread
From: Alexander Puck Neuwirth @ 2025-05-06 13:53 UTC (permalink / raw
To: gentoo-commits
commit: e645e085c025721a92ed73b89374645d706d6f2b
Author: Alexander Puck Neuwirth <alexander <AT> neuwirth-informatik <DOT> de>
AuthorDate: Tue May 6 00:21:39 2025 +0000
Commit: Alexander Puck Neuwirth <alexander <AT> neuwirth-informatik <DOT> de>
CommitDate: Tue May 6 13:52:18 2025 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e645e085
sci-biology/longstitch: treeclean
Signed-off-by: Alexander Puck Neuwirth <alexander <AT> neuwirth-informatik.de>
sci-biology/longstitch/longstitch-1.0.1.ebuild | 27 --------------------------
sci-biology/longstitch/metadata.xml | 15 --------------
2 files changed, 42 deletions(-)
diff --git a/sci-biology/longstitch/longstitch-1.0.1.ebuild b/sci-biology/longstitch/longstitch-1.0.1.ebuild
deleted file mode 100644
index b14bdee87..000000000
--- a/sci-biology/longstitch/longstitch-1.0.1.ebuild
+++ /dev/null
@@ -1,27 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DESCRIPTION="Scaffold genome assemblies by Chromium/PacBio/Nanopore reads"
-HOMEPAGE="https://github.com/bcgsc/LongStitch"
-SRC_URI="https://github.com/bcgsc/LongStitch/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
-S="${WORKDIR}/LongStitch-${PV}"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS="~amd64"
-
-RESTRICT="test"
-
-RDEPEND="
- sci-biology/abyss
- sci-biology/tigmint
- sci-biology/LINKS
- sci-biology/samtools
-"
-
-src_install(){
- dobin longstitch
- dodoc README.md LongStitch_overview.pdf
-}
diff --git a/sci-biology/longstitch/metadata.xml b/sci-biology/longstitch/metadata.xml
deleted file mode 100644
index b25087121..000000000
--- a/sci-biology/longstitch/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="github">bcgsc/LongStitch</remote-id>
- </upstream>
-</pkgmetadata>
^ permalink raw reply related [flat|nested] 4+ messages in thread
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