From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from smtp.gentoo.org (woodpecker.gentoo.org [140.211.166.183]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 004AD1584AD for ; Sun, 13 Apr 2025 16:44:41 +0000 (UTC) Received: from lists.gentoo.org (bobolink.gentoo.org [140.211.166.189]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) (Authenticated sender: relay-lists.gentoo.org@gentoo.org) by smtp.gentoo.org (Postfix) with ESMTPSA id DCC6D3430CB for ; Sun, 13 Apr 2025 16:44:40 +0000 (UTC) Received: from bobolink.gentoo.org (localhost [127.0.0.1]) by bobolink.gentoo.org (Postfix) with ESMTP id 2CD251104B1; Sun, 13 Apr 2025 16:44:37 +0000 (UTC) Received: from smtp.gentoo.org (woodpecker.gentoo.org [140.211.166.183]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by bobolink.gentoo.org (Postfix) with ESMTPS id 20E051104B1 for ; Sun, 13 Apr 2025 16:44:37 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id C4EE03430B8 for ; Sun, 13 Apr 2025 16:44:36 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 565E827F1 for ; Sun, 13 Apr 2025 16:44:35 +0000 (UTC) From: "Pacho Ramos" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Pacho Ramos" Message-ID: <1744562628.f7cf5ad7607bed6d60bbf6276cce3c1b87a75f2b.pacho@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/ X-VCS-Repository: repo/gentoo X-VCS-Files: sci-chemistry/dssp/Manifest sci-chemistry/dssp/dssp-4.5.0.ebuild X-VCS-Directories: sci-chemistry/dssp/ X-VCS-Committer: pacho X-VCS-Committer-Name: Pacho Ramos X-VCS-Revision: f7cf5ad7607bed6d60bbf6276cce3c1b87a75f2b X-VCS-Branch: master Date: Sun, 13 Apr 2025 16:44:35 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: f03f1242-df81-4497-9589-413bd05eb43c X-Archives-Hash: 0c92ee3db7c843333383f0ac0c0a05ff commit: f7cf5ad7607bed6d60bbf6276cce3c1b87a75f2b Author: Pacho Ramos gentoo org> AuthorDate: Sun Apr 13 16:25:03 2025 +0000 Commit: Pacho Ramos gentoo org> CommitDate: Sun Apr 13 16:43:48 2025 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f7cf5ad7 sci-chemistry/dssp: add 4.5.0 Signed-off-by: Pacho Ramos gentoo.org> sci-chemistry/dssp/Manifest | 1 + sci-chemistry/dssp/dssp-4.5.0.ebuild | 55 ++++++++++++++++++++++++++++++++++++ 2 files changed, 56 insertions(+) diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest index 5483a463dfec..9394a2ddba66 100644 --- a/sci-chemistry/dssp/Manifest +++ b/sci-chemistry/dssp/Manifest @@ -2,3 +2,4 @@ DIST dssp-2.2.1.tgz 47141 BLAKE2B 34d8b2db8797a8c23763766c0214337f03584c4be52c1b DIST dssp-3.0.11.tar.gz 168085 BLAKE2B e1c42fd22cfb2287f10b5deae48b56a4583d4a67737a3485dcbd160d1597a15c2d5105c3794c875d8001abede1c014efb4f7f5b7c250f867bdf9ed95a0860217 SHA512 a0cfe44e517ff1f909ef2928b62ae2c639c6bddfd8a0fb538883f647fd2771e00da68e0fd2521aa02ba3c6d1b0c9b784b7fe142392af3a3abf6ea89f1546bd9d DIST dssp-4.4.10.tar.gz 164259 BLAKE2B 5d82ce25779060f89b50742683102aea53984fca10e54aa3cd0b21c7be3684336f6561928282e40300bb164c5b881797fababa5175c139f5b304a952f21db661 SHA512 1bdbdd4b058801d78cc28dcb23478656dfb322ce81f4fe8ede2cd72640778084ce8c99aff367aff53c26ad221ffa6ebafcf9730005b1a873957d26eb42f724c8 DIST dssp-4.4.11.tar.gz 163930 BLAKE2B 00da516faeac6f49a6b2b82d69c6e92a53531e2a0cf98718e7fa78f848b060b9f2d68f255e958842ff748119f7f3de2a06e5d6fffd4c1787485a81562185ffb7 SHA512 3abe6d6f5578714358c551bc4d4426c5359f68329058deb50fe4f643e4b380e7fa41de7aeb9d016211d69b72c7d892c17d5268b34b65c1566ff33ae978ee6f9b +DIST dssp-4.5.0.tar.gz 163776 BLAKE2B aed788363920b800d552cb098490b47ceb38021a8dc2d3fcb3fe3d546d54dd3fd0499ecbf01af6719cfc03752f31205d2be8f249ae52176a4613791856a4cffd SHA512 161c529b31273970a7dd45c587e443db8bbee2565ea5d8e647c768402b3eded885537d8a728cd638df3fb4d6cf3775073ef1193fe3e0bfa66f77ac9b79ae0f4f diff --git a/sci-chemistry/dssp/dssp-4.5.0.ebuild b/sci-chemistry/dssp/dssp-4.5.0.ebuild new file mode 100644 index 000000000000..bc803349962a --- /dev/null +++ b/sci-chemistry/dssp/dssp-4.5.0.ebuild @@ -0,0 +1,55 @@ +# Copyright 1999-2025 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 +inherit cmake + +DESCRIPTION="The protein secondary structure standard" +HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/PDB-REDO/dssp" +SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +# doc disabled as it only generates a PDF from the manpage for now +# https://github.com/PDB-REDO/dssp/issues/64 +#IUSE="doc" + +CDEPEND=" + dev-libs/boost:=[zlib] + >=dev-libs/libmcfp-1.3.5 + >=sci-libs/libcifpp-8.0.0 +" +BDEPEND="${CDEPEND} + dev-cpp/catch:0 +" +# doc? ( +# || ( app-text/pandoc-bin[pandoc-symlink] app-text/pandoc ) +# dev-python/weasyprint +# ) +RDEPEND="${CDEPEND}" + +#src_prepare() { +# # wkhtmltopdf is not available on Gentoo +# sed -i -e \ +# 's/-t html/-t html --pdf-engine=weasyprint/' \ +# CMakeLists.txt +# cmake_src_prepare +#} + +src_configure() { + local mycmakeargs=( + #-DBUILD_DOCUMENTATION=$(usex doc) + -DBUILD_DOCUMENTATION=NO + ) + cmake_src_configure +} + +pkg_postinst() { + if has_version "<=sci-chemistry/gromacs-2022"; then + ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:" + ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129" + ewarn + ewarn "Feel free to mask newer versions if needed." + fi +}