* [gentoo-commits] proj/sci:master commit in: sci-chemistry/chimera/
@ 2025-03-05 17:00 Pacho Ramos
0 siblings, 0 replies; 6+ messages in thread
From: Pacho Ramos @ 2025-03-05 17:00 UTC (permalink / raw
To: gentoo-commits
commit: e1eaa0ee00687c0ab7e95c77d1a8b956d42e93eb
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Wed Mar 5 17:00:02 2025 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Wed Mar 5 17:00:02 2025 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e1eaa0ee
sci-chemistry/chimera: Fix pkgcheck warnings
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/chimera/chimera-1.18.ebuild | 7 ++-----
1 file changed, 2 insertions(+), 5 deletions(-)
diff --git a/sci-chemistry/chimera/chimera-1.18.ebuild b/sci-chemistry/chimera/chimera-1.18.ebuild
index 459fe6b30..b4b3b164e 100644
--- a/sci-chemistry/chimera/chimera-1.18.ebuild
+++ b/sci-chemistry/chimera/chimera-1.18.ebuild
@@ -8,16 +8,15 @@ DESCRIPTION="Next generation molecular visualization program from RBVI"
HOMEPAGE="https://www.cgl.ucsf.edu/chimera/"
SRC_URI="${P}-linux_x86_64.bin
mirror+https://dev.gentoo.org/~pacho/${PN}/Chimera512.png"
+S="${WORKDIR}"
+LICENSE="chimera"
SLOT="0"
-LICENSE="chimera"
KEYWORDS="~amd64 ~x86"
RESTRICT="fetch mirror strip"
QA_PREBUILT="*"
-DEPEND=""
-BDEPEND=""
RDEPEND="
dev-lang/tcl
dev-lang/tk
@@ -50,8 +49,6 @@ RDEPEND="
virtual/libcrypt:=
"
-S="${WORKDIR}"
-
pkg_nofetch() {
elog "Please visit"
elog "https://www.cgl.ucsf.edu/chimera/download.html"
^ permalink raw reply related [flat|nested] 6+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-chemistry/chimera/
@ 2025-03-05 17:00 Pacho Ramos
0 siblings, 0 replies; 6+ messages in thread
From: Pacho Ramos @ 2025-03-05 17:00 UTC (permalink / raw
To: gentoo-commits
commit: db3c07ee95aa3ddbf4af419d9bdbcd8f82280a5d
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Wed Mar 5 16:58:13 2025 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Wed Mar 5 16:58:13 2025 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=db3c07ee
sci-chemistry/chimera: drop 1.17.1
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/chimera/chimera-1.17.1.ebuild | 93 -----------------------------
1 file changed, 93 deletions(-)
diff --git a/sci-chemistry/chimera/chimera-1.17.1.ebuild b/sci-chemistry/chimera/chimera-1.17.1.ebuild
deleted file mode 100644
index 919350ac9..000000000
--- a/sci-chemistry/chimera/chimera-1.17.1.ebuild
+++ /dev/null
@@ -1,93 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-inherit desktop xdg
-
-DESCRIPTION="Next generation molecular visualization program from RBVI"
-HOMEPAGE="https://www.cgl.ucsf.edu/chimera/"
-SRC_URI="chimera-${PV}-linux_x86_64.bin
- fetch+http://svn.cgl.ucsf.edu/svn/chimera/trunk/icons/chimera/Chimera512.png"
-
-SLOT="0"
-LICENSE="chimera"
-KEYWORDS="~amd64 ~x86"
-
-RESTRICT="fetch mirror strip"
-QA_PREBUILT="*"
-
-DEPEND=""
-BDEPEND=""
-RDEPEND="
- dev-lang/tcl
- dev-lang/tk
- dev-libs/expat
- dev-libs/libotf
- dev-libs/openssl:0
- dev-libs/libpcre
- sys-libs/zlib
- media-libs/fontconfig
- media-libs/freetype
- media-libs/ftgl
- media-libs/libpng
- media-libs/tiff
- sci-libs/hdf5
- sys-devel/gcc[openmp,fortran]
- media-libs/libjpeg-turbo
- virtual/glu
- virtual/opengl
- x11-libs/libX11
- x11-libs/libICE
- x11-libs/libXext
- x11-libs/libXft
- x11-libs/libXmu
- x11-libs/libXpm
- x11-libs/libXrender
- x11-libs/libSM
- x11-libs/libXt
- x11-libs/libGLw
- virtual/libcrypt:=
-"
-
-S="${WORKDIR}"
-
-pkg_nofetch() {
- elog "Please visit"
- elog "https://www.cgl.ucsf.edu/chimera/download.html"
- elog "and download chimera-${PV}-linux_x86_64.bin into your DISTDIR"
-}
-
-src_unpack() {
- cp "${DISTDIR}"/chimera-${PV}-linux_x86_64.bin chimera-${PV}-linux_x86_64.bin.zip
- unzip chimera-${PV}-linux_x86_64.bin.zip || die
-}
-
-src_install() {
- chmod +x ./chimera.bin
- dodir /opt/
- ./chimera.bin -d foo || die
- newicon "${DISTDIR}"/Chimera512.png Chimera.png
- make_desktop_entry "${EPREFIX}/opt/bin/chimera" Chimera Chimera
- mv foo "${ED}/opt/${PN}" || die
-
- cat >> "${T}"/chimera <<- EOF
- #!${EPREFX}/bin/bash
-
- export PATH="${EPREFIX}/opt/${PN}/bin:\${PATH}"
- "${EPREFIX}/opt/${PN}/bin/chimera" \$@
- EOF
-
- exeinto /opt/bin/
- doexe "${T}"/chimera
-
- # point the symlink to the correct location
- rm "${ED}/opt/chimera/include/ft2build.h" || die
- dosym ../../../usr/include/freetype2/ft2build.h opt/chimera/include/ft2build.h
-
- if use prefix; then
- local i
- for i in "${ED}"/opt/${PN}/bin/{tiffcp,povray,al2co} "${ED}"/opt/${PN}/lib/*.so; do
- patchelf --set-rpath "${EPREFIX}/usr/lib:${EPREFIX}/opt/${PN}/lib" "${i}" || die
- done
- fi
-}
^ permalink raw reply related [flat|nested] 6+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-chemistry/chimera/
@ 2025-03-05 17:00 Pacho Ramos
0 siblings, 0 replies; 6+ messages in thread
From: Pacho Ramos @ 2025-03-05 17:00 UTC (permalink / raw
To: gentoo-commits
commit: f1f6aa85e44422946cc935ea310cd64dec5e6f90
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Wed Mar 5 16:58:04 2025 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Wed Mar 5 16:58:04 2025 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f1f6aa85
sci-chemistry/chimera: add 1.18
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/chimera/chimera-1.18.ebuild | 94 +++++++++++++++++++++++++++++++
1 file changed, 94 insertions(+)
diff --git a/sci-chemistry/chimera/chimera-1.18.ebuild b/sci-chemistry/chimera/chimera-1.18.ebuild
new file mode 100644
index 000000000..459fe6b30
--- /dev/null
+++ b/sci-chemistry/chimera/chimera-1.18.ebuild
@@ -0,0 +1,94 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit desktop xdg
+
+DESCRIPTION="Next generation molecular visualization program from RBVI"
+HOMEPAGE="https://www.cgl.ucsf.edu/chimera/"
+SRC_URI="${P}-linux_x86_64.bin
+ mirror+https://dev.gentoo.org/~pacho/${PN}/Chimera512.png"
+
+SLOT="0"
+LICENSE="chimera"
+KEYWORDS="~amd64 ~x86"
+
+RESTRICT="fetch mirror strip"
+QA_PREBUILT="*"
+
+DEPEND=""
+BDEPEND=""
+RDEPEND="
+ dev-lang/tcl
+ dev-lang/tk
+ dev-libs/expat
+ dev-libs/libotf
+ dev-libs/openssl:0
+ dev-libs/libpcre
+ sys-libs/zlib
+ media-libs/fontconfig
+ media-libs/freetype
+ media-libs/ftgl
+ media-libs/libpng
+ media-libs/tiff
+ sci-libs/hdf5
+ sys-libs/ncurses-compat
+ sys-devel/gcc[openmp,fortran]
+ media-libs/libjpeg-turbo
+ virtual/glu
+ virtual/opengl
+ x11-libs/libX11
+ x11-libs/libICE
+ x11-libs/libXext
+ x11-libs/libXft
+ x11-libs/libXmu
+ x11-libs/libXpm
+ x11-libs/libXrender
+ x11-libs/libSM
+ x11-libs/libXt
+ x11-libs/libGLw
+ virtual/libcrypt:=
+"
+
+S="${WORKDIR}"
+
+pkg_nofetch() {
+ elog "Please visit"
+ elog "https://www.cgl.ucsf.edu/chimera/download.html"
+ elog "and download ${P}-linux_x86_64.bin into your DISTDIR"
+}
+
+src_unpack() {
+ cp "${DISTDIR}"/${P}-linux_x86_64.bin ${P}-linux_x86_64.bin.zip
+ unzip ${P}-linux_x86_64.bin.zip || die
+}
+
+src_install() {
+ chmod +x ./chimera.bin
+ dodir /opt/
+ ./chimera.bin -d foo || die
+ newicon "${DISTDIR}"/Chimera512.png Chimera.png
+ make_desktop_entry "${EPREFIX}/opt/bin/chimera" Chimera Chimera
+ mv foo "${ED}/opt/${PN}" || die
+
+ cat >> "${T}"/chimera <<- EOF
+ #!${EPREFX}/bin/bash
+
+ export PATH="${EPREFIX}/opt/${PN}/bin:\${PATH}"
+ "${EPREFIX}/opt/${PN}/bin/chimera" \$@
+ EOF
+
+ exeinto /opt/bin/
+ doexe "${T}"/chimera
+
+ # point the symlink to the correct location
+ rm "${ED}/opt/chimera/include/ft2build.h" || die
+ dosym ../../../usr/include/freetype2/ft2build.h opt/chimera/include/ft2build.h
+
+ if use prefix; then
+ local i
+ for i in "${ED}"/opt/${PN}/bin/{tiffcp,povray,al2co} "${ED}"/opt/${PN}/lib/*.so; do
+ patchelf --set-rpath "${EPREFIX}/usr/lib:${EPREFIX}/opt/${PN}/lib" "${i}" || die
+ done
+ fi
+}
^ permalink raw reply related [flat|nested] 6+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-chemistry/chimera/
@ 2023-10-19 14:25 Pacho Ramos
0 siblings, 0 replies; 6+ messages in thread
From: Pacho Ramos @ 2023-10-19 14:25 UTC (permalink / raw
To: gentoo-commits
commit: 44e946f5745557c6147af42882099eabcc97ebd4
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Thu Oct 19 14:22:10 2023 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Thu Oct 19 14:22:10 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=44e946f5
sci-chemistry/chimera: add 1.17.3
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/chimera/chimera-1.17.3.ebuild | 93 +++++++++++++++++++++++++++++
1 file changed, 93 insertions(+)
diff --git a/sci-chemistry/chimera/chimera-1.17.3.ebuild b/sci-chemistry/chimera/chimera-1.17.3.ebuild
new file mode 100644
index 000000000..4fdafd361
--- /dev/null
+++ b/sci-chemistry/chimera/chimera-1.17.3.ebuild
@@ -0,0 +1,93 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit desktop xdg
+
+DESCRIPTION="Next generation molecular visualization program from RBVI"
+HOMEPAGE="https://www.cgl.ucsf.edu/chimera/"
+SRC_URI="${P}-linux_x86_64.bin
+ mirror+https://dev.gentoo.org/~pacho/${PN}/Chimera512.png"
+
+SLOT="0"
+LICENSE="chimera"
+KEYWORDS="~amd64 ~x86"
+
+RESTRICT="fetch mirror strip"
+QA_PREBUILT="*"
+
+DEPEND=""
+BDEPEND=""
+RDEPEND="
+ dev-lang/tcl
+ dev-lang/tk
+ dev-libs/expat
+ dev-libs/libotf
+ dev-libs/openssl:0
+ dev-libs/libpcre
+ sys-libs/zlib
+ media-libs/fontconfig
+ media-libs/freetype
+ media-libs/ftgl
+ media-libs/libpng
+ media-libs/tiff
+ sci-libs/hdf5
+ sys-devel/gcc[openmp,fortran]
+ media-libs/libjpeg-turbo
+ virtual/glu
+ virtual/opengl
+ x11-libs/libX11
+ x11-libs/libICE
+ x11-libs/libXext
+ x11-libs/libXft
+ x11-libs/libXmu
+ x11-libs/libXpm
+ x11-libs/libXrender
+ x11-libs/libSM
+ x11-libs/libXt
+ x11-libs/libGLw
+ virtual/libcrypt:=
+"
+
+S="${WORKDIR}"
+
+pkg_nofetch() {
+ elog "Please visit"
+ elog "https://www.cgl.ucsf.edu/chimera/download.html"
+ elog "and download ${P}-linux_x86_64.bin into your DISTDIR"
+}
+
+src_unpack() {
+ cp "${DISTDIR}"/${P}-linux_x86_64.bin ${P}-linux_x86_64.bin.zip
+ unzip ${P}-linux_x86_64.bin.zip || die
+}
+
+src_install() {
+ chmod +x ./chimera.bin
+ dodir /opt/
+ ./chimera.bin -d foo || die
+ newicon "${DISTDIR}"/Chimera512.png Chimera.png
+ make_desktop_entry "${EPREFIX}/opt/bin/chimera" Chimera Chimera
+ mv foo "${ED}/opt/${PN}" || die
+
+ cat >> "${T}"/chimera <<- EOF
+ #!${EPREFX}/bin/bash
+
+ export PATH="${EPREFIX}/opt/${PN}/bin:\${PATH}"
+ "${EPREFIX}/opt/${PN}/bin/chimera" \$@
+ EOF
+
+ exeinto /opt/bin/
+ doexe "${T}"/chimera
+
+ # point the symlink to the correct location
+ rm "${ED}/opt/chimera/include/ft2build.h" || die
+ dosym ../../../usr/include/freetype2/ft2build.h opt/chimera/include/ft2build.h
+
+ if use prefix; then
+ local i
+ for i in "${ED}"/opt/${PN}/bin/{tiffcp,povray,al2co} "${ED}"/opt/${PN}/lib/*.so; do
+ patchelf --set-rpath "${EPREFIX}/usr/lib:${EPREFIX}/opt/${PN}/lib" "${i}" || die
+ done
+ fi
+}
^ permalink raw reply related [flat|nested] 6+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-chemistry/chimera/
@ 2023-05-04 12:04 Pacho Ramos
0 siblings, 0 replies; 6+ messages in thread
From: Pacho Ramos @ 2023-05-04 12:04 UTC (permalink / raw
To: gentoo-commits
commit: 228413e53ddf1e03f63b120f31fda54c4957c86e
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Thu May 4 12:04:46 2023 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Thu May 4 12:04:46 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=228413e5
sci-chemistry/chimera: update HOMEPAGE
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/chimera/chimera-1.17.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-chemistry/chimera/chimera-1.17.1.ebuild b/sci-chemistry/chimera/chimera-1.17.1.ebuild
index 6cb958a5f..919350ac9 100644
--- a/sci-chemistry/chimera/chimera-1.17.1.ebuild
+++ b/sci-chemistry/chimera/chimera-1.17.1.ebuild
@@ -5,7 +5,7 @@ EAPI=8
inherit desktop xdg
DESCRIPTION="Next generation molecular visualization program from RBVI"
-HOMEPAGE="https://www.cgl.ucsf.edu/chimerax/"
+HOMEPAGE="https://www.cgl.ucsf.edu/chimera/"
SRC_URI="chimera-${PV}-linux_x86_64.bin
fetch+http://svn.cgl.ucsf.edu/svn/chimera/trunk/icons/chimera/Chimera512.png"
^ permalink raw reply related [flat|nested] 6+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-chemistry/chimera/
@ 2023-04-27 23:17 Pacho Ramos
0 siblings, 0 replies; 6+ messages in thread
From: Pacho Ramos @ 2023-04-27 23:17 UTC (permalink / raw
To: gentoo-commits
commit: c99319166709ae3b673c6976d3f8bd7e6ef44fb2
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Thu Apr 27 13:14:27 2023 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Thu Apr 27 23:15:21 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c9931916
sci-chemistry/chimera: new package, add 1.17.1
By the way, as chimera-bin was dropped, use a non "-bin" name as there is no
source version for this
https://devmanual.gentoo.org/ebuild-writing/file-format/index.html#binary-packages
Closes: https://bugs.gentoo.org/903559
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/chimera/chimera-1.17.1.ebuild | 93 +++++++++++++++++++++++++++++
sci-chemistry/chimera/metadata.xml | 12 ++++
2 files changed, 105 insertions(+)
diff --git a/sci-chemistry/chimera/chimera-1.17.1.ebuild b/sci-chemistry/chimera/chimera-1.17.1.ebuild
new file mode 100644
index 000000000..6cb958a5f
--- /dev/null
+++ b/sci-chemistry/chimera/chimera-1.17.1.ebuild
@@ -0,0 +1,93 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit desktop xdg
+
+DESCRIPTION="Next generation molecular visualization program from RBVI"
+HOMEPAGE="https://www.cgl.ucsf.edu/chimerax/"
+SRC_URI="chimera-${PV}-linux_x86_64.bin
+ fetch+http://svn.cgl.ucsf.edu/svn/chimera/trunk/icons/chimera/Chimera512.png"
+
+SLOT="0"
+LICENSE="chimera"
+KEYWORDS="~amd64 ~x86"
+
+RESTRICT="fetch mirror strip"
+QA_PREBUILT="*"
+
+DEPEND=""
+BDEPEND=""
+RDEPEND="
+ dev-lang/tcl
+ dev-lang/tk
+ dev-libs/expat
+ dev-libs/libotf
+ dev-libs/openssl:0
+ dev-libs/libpcre
+ sys-libs/zlib
+ media-libs/fontconfig
+ media-libs/freetype
+ media-libs/ftgl
+ media-libs/libpng
+ media-libs/tiff
+ sci-libs/hdf5
+ sys-devel/gcc[openmp,fortran]
+ media-libs/libjpeg-turbo
+ virtual/glu
+ virtual/opengl
+ x11-libs/libX11
+ x11-libs/libICE
+ x11-libs/libXext
+ x11-libs/libXft
+ x11-libs/libXmu
+ x11-libs/libXpm
+ x11-libs/libXrender
+ x11-libs/libSM
+ x11-libs/libXt
+ x11-libs/libGLw
+ virtual/libcrypt:=
+"
+
+S="${WORKDIR}"
+
+pkg_nofetch() {
+ elog "Please visit"
+ elog "https://www.cgl.ucsf.edu/chimera/download.html"
+ elog "and download chimera-${PV}-linux_x86_64.bin into your DISTDIR"
+}
+
+src_unpack() {
+ cp "${DISTDIR}"/chimera-${PV}-linux_x86_64.bin chimera-${PV}-linux_x86_64.bin.zip
+ unzip chimera-${PV}-linux_x86_64.bin.zip || die
+}
+
+src_install() {
+ chmod +x ./chimera.bin
+ dodir /opt/
+ ./chimera.bin -d foo || die
+ newicon "${DISTDIR}"/Chimera512.png Chimera.png
+ make_desktop_entry "${EPREFIX}/opt/bin/chimera" Chimera Chimera
+ mv foo "${ED}/opt/${PN}" || die
+
+ cat >> "${T}"/chimera <<- EOF
+ #!${EPREFX}/bin/bash
+
+ export PATH="${EPREFIX}/opt/${PN}/bin:\${PATH}"
+ "${EPREFIX}/opt/${PN}/bin/chimera" \$@
+ EOF
+
+ exeinto /opt/bin/
+ doexe "${T}"/chimera
+
+ # point the symlink to the correct location
+ rm "${ED}/opt/chimera/include/ft2build.h" || die
+ dosym ../../../usr/include/freetype2/ft2build.h opt/chimera/include/ft2build.h
+
+ if use prefix; then
+ local i
+ for i in "${ED}"/opt/${PN}/bin/{tiffcp,povray,al2co} "${ED}"/opt/${PN}/lib/*.so; do
+ patchelf --set-rpath "${EPREFIX}/usr/lib:${EPREFIX}/opt/${PN}/lib" "${i}" || die
+ done
+ fi
+}
diff --git a/sci-chemistry/chimera/metadata.xml b/sci-chemistry/chimera/metadata.xml
new file mode 100644
index 000000000..5c83ce208
--- /dev/null
+++ b/sci-chemistry/chimera/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="person">
+ <email>pacho@gentoo.org</email>
+ <name>Pacho Ramos</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>sci-chemistry@gentoo.org</email>
+ <name>Gentoo Chemistry Project</name>
+ </maintainer>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 6+ messages in thread
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