From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from smtp.gentoo.org (woodpecker.gentoo.org [140.211.166.183]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id ADD48158B20 for ; Thu, 06 Feb 2025 14:03:45 +0000 (UTC) Received: from lists.gentoo.org (bobolink.gentoo.org [140.211.166.189]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) (Authenticated sender: relay-lists.gentoo.org@gentoo.org) by smtp.gentoo.org (Postfix) with ESMTPSA id 93E5F34306C for ; Thu, 06 Feb 2025 14:03:45 +0000 (UTC) Received: from bobolink.gentoo.org (localhost [127.0.0.1]) by bobolink.gentoo.org (Postfix) with ESMTP id DEC5D110472; Thu, 06 Feb 2025 14:03:40 +0000 (UTC) Received: from smtp.gentoo.org (woodpecker.gentoo.org [140.211.166.183]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by bobolink.gentoo.org (Postfix) with ESMTPS id DA95E110472 for ; Thu, 06 Feb 2025 14:03:40 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 8DE9A342FF4 for ; Thu, 06 Feb 2025 14:03:40 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id E7B9D268A for ; Thu, 06 Feb 2025 14:03:38 +0000 (UTC) From: "Nowa Ammerlaan" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Nowa Ammerlaan" Message-ID: <1738850072.ae0f5a7eac0d9d02c7d62737477f07a1c61e94f1.nowa@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/deeptools/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/deeptools/deeptools-3.5.0.ebuild sci-biology/deeptools/deeptools-3.5.1.ebuild X-VCS-Directories: sci-biology/deeptools/ X-VCS-Committer: nowa X-VCS-Committer-Name: Nowa Ammerlaan X-VCS-Revision: ae0f5a7eac0d9d02c7d62737477f07a1c61e94f1 X-VCS-Branch: master Date: Thu, 06 Feb 2025 14:03:38 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: e2502235-37e5-4bf5-95d1-683dbcc09c1b X-Archives-Hash: ace83ed55c7207b6b31d00737bed649d commit: ae0f5a7eac0d9d02c7d62737477f07a1c61e94f1 Author: Michael Schubert gmail com> AuthorDate: Sun Jan 26 14:23:56 2025 +0000 Commit: Nowa Ammerlaan gentoo org> CommitDate: Thu Feb 6 13:54:32 2025 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ae0f5a7e sci-biology/deeptools: drop outdated ebuilds Signed-off-by: Michael Schubert gmail.com> Closes: https://github.com/gentoo/sci/pull/1317 Signed-off-by: Nowa Ammerlaan gentoo.org> sci-biology/deeptools/deeptools-3.5.0.ebuild | 37 ---------------------------- sci-biology/deeptools/deeptools-3.5.1.ebuild | 37 ---------------------------- 2 files changed, 74 deletions(-) diff --git a/sci-biology/deeptools/deeptools-3.5.0.ebuild b/sci-biology/deeptools/deeptools-3.5.0.ebuild deleted file mode 100644 index 7c2eaa739..000000000 --- a/sci-biology/deeptools/deeptools-3.5.0.ebuild +++ /dev/null @@ -1,37 +0,0 @@ -# Copyright 1999-2023 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -DISTUTILS_USE_PEP517=setuptools -PYTHON_COMPAT=( python3_{10..11} ) - -inherit distutils-r1 - -DESCRIPTION="Extract reads from BAM files, normalize, draw figures, convert BAM to bigWig" -HOMEPAGE="https://github.com/deeptools/deepTools" -SRC_URI="https://github.com/deeptools/deepTools/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64" - -# TODO: fix this -RESTRICT="test" - -RDEPEND=" - >=sci-biology/deeptools-intervals-0.1.8[${PYTHON_USEDEP}] - >=dev-python/numpy-1.9.0[${PYTHON_USEDEP}] - >=dev-python/numpydoc-0.5[${PYTHON_USEDEP}] - >=dev-python/scipy-0.17.0[${PYTHON_USEDEP}] - dev-python/plotly[${PYTHON_USEDEP}] - >=dev-python/py2bit-0.2.0[${PYTHON_USEDEP}] - >=dev-python/pyBigWig-0.2.1[${PYTHON_USEDEP}] - >=sci-biology/pysam-0.14.0[${PYTHON_USEDEP}] - >=dev-python/matplotlib-3.1.0[${PYTHON_USEDEP}] -" - -S="${WORKDIR}/deepTools-${PV}" - -distutils_enable_sphinx docs dev-python/sphinx-rtd-theme dev-python/sphinx-argparse -#distutils_enable_tests nose diff --git a/sci-biology/deeptools/deeptools-3.5.1.ebuild b/sci-biology/deeptools/deeptools-3.5.1.ebuild deleted file mode 100644 index 7c2eaa739..000000000 --- a/sci-biology/deeptools/deeptools-3.5.1.ebuild +++ /dev/null @@ -1,37 +0,0 @@ -# Copyright 1999-2023 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -DISTUTILS_USE_PEP517=setuptools -PYTHON_COMPAT=( python3_{10..11} ) - -inherit distutils-r1 - -DESCRIPTION="Extract reads from BAM files, normalize, draw figures, convert BAM to bigWig" -HOMEPAGE="https://github.com/deeptools/deepTools" -SRC_URI="https://github.com/deeptools/deepTools/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64" - -# TODO: fix this -RESTRICT="test" - -RDEPEND=" - >=sci-biology/deeptools-intervals-0.1.8[${PYTHON_USEDEP}] - >=dev-python/numpy-1.9.0[${PYTHON_USEDEP}] - >=dev-python/numpydoc-0.5[${PYTHON_USEDEP}] - >=dev-python/scipy-0.17.0[${PYTHON_USEDEP}] - dev-python/plotly[${PYTHON_USEDEP}] - >=dev-python/py2bit-0.2.0[${PYTHON_USEDEP}] - >=dev-python/pyBigWig-0.2.1[${PYTHON_USEDEP}] - >=sci-biology/pysam-0.14.0[${PYTHON_USEDEP}] - >=dev-python/matplotlib-3.1.0[${PYTHON_USEDEP}] -" - -S="${WORKDIR}/deepTools-${PV}" - -distutils_enable_sphinx docs dev-python/sphinx-rtd-theme dev-python/sphinx-argparse -#distutils_enable_tests nose