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Sat, 11 Jan 2025 09:29:18 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id C2192AED for ; Sat, 11 Jan 2025 09:29:16 +0000 (UTC) From: "Michał Górny" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Michał Górny" Message-ID: <1736587740.495a57b3d5e6430a002f343a2a186690f530ce5f.mgorny@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: dev-python/scipy/ X-VCS-Repository: repo/gentoo X-VCS-Files: dev-python/scipy/Manifest dev-python/scipy/scipy-1.15.1.ebuild X-VCS-Directories: dev-python/scipy/ X-VCS-Committer: mgorny X-VCS-Committer-Name: Michał Górny X-VCS-Revision: 495a57b3d5e6430a002f343a2a186690f530ce5f X-VCS-Branch: master Date: Sat, 11 Jan 2025 09:29:16 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 1c23a66c-b57a-405c-b6f3-1bbc5b6b1478 X-Archives-Hash: 103dc7a45f669e9d8cad4d9c30da511c commit: 495a57b3d5e6430a002f343a2a186690f530ce5f Author: Michał Górny gentoo org> AuthorDate: Sat Jan 11 05:04:11 2025 +0000 Commit: Michał Górny gentoo org> CommitDate: Sat Jan 11 09:29:00 2025 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=495a57b3 dev-python/scipy: Bump to 1.15.1 Signed-off-by: Michał Górny gentoo.org> dev-python/scipy/Manifest | 2 + dev-python/scipy/scipy-1.15.1.ebuild | 163 +++++++++++++++++++++++++++++++++++ 2 files changed, 165 insertions(+) diff --git a/dev-python/scipy/Manifest b/dev-python/scipy/Manifest index 667a5436da54..f19eb2f509f3 100644 --- a/dev-python/scipy/Manifest +++ b/dev-python/scipy/Manifest @@ -1,3 +1,5 @@ DIST scipy-1.14.1.tar.gz 58620554 BLAKE2B 5cb383648a5f3b8d0d321efcd66992212c59ce3fc3dbf812a2fa97c09cb18831b280af6c7689553644f83c531a266e9152e2a139a12aed08307e1ed64deea78e SHA512 20e3cf13590f76dfdc40ca8f90e6d5a68502e74415f37fa24fdb8169098e1d7f0aa631ae742c8c3e9573fa7d63da61986d51f35f090a3785873ae0761f7fcfa6 DIST scipy-1.15.0.tar.gz 59407226 BLAKE2B 30e2f1c797c46646b21578c9b22145773c27119674ec8d4bba1b6e4bac4fe6d56d7b6fa49964783f432008a027e1498edbdceec6d1345aaee4bbe8975648b9b7 SHA512 62c2616535790a65cfe5907abaaa655ca9268406765e9baab31097aece7a3887e2bc616a77abe9869b2ff4b07dc4a56fc1dbbaaf82ebfd7d9a89e05b8e87df86 +DIST scipy-1.15.1.tar.gz 59407493 BLAKE2B 959e1e311c5e53c2751794f629777a611ebd79c87d6cc2dec330ca335100b773528aa151e319cd9ae0520257d89597acdb3aca2319ab78c367c135499f54001f SHA512 92cb6a2cdb5a305eef0aa81baea4b90c14c0084c09ffbf62f2d6ee8dd5a08791a838838e2d4907356b5b07d0b4f74a81a8e861f81628bd9e5c7e0216e3f77b17 DIST scipy-html-1.14.0.zip 65723829 BLAKE2B ba47dbf00a5d2a53a9addc5ea68ab18b42f211a018b89aa4b0b57ff0dee02e410a3effc59ddf8fbbc5aa33075d45d86880aed3a14068da5bd7b62ee526199967 SHA512 93be0bafcc64cea1ba130bbcc77c0741acc4f819c84a5030391a22657a1bc63abe8434a2723f66b7ad04c0809dc6d02e3a97ffb8d94bd3d4a4bb759ee796b475 +DIST scipy-html-1.15.1.zip 68514487 BLAKE2B 328550d3d5700c520b2a6404c326a54ffecacc95ad5d05c727d833803d698346fb0188b6bcb659838c1a0f26355b28d70df02cddff48b8bdf564292e6cab56bc SHA512 14311da185c9454fe7dd2a8253dc4fad434664df4c7261b22a3415de576a49d51ce9a00dfb3c3ea4df9ce2bf1c9d7547ceeeb5af72eeda823243d7a2541db676 diff --git a/dev-python/scipy/scipy-1.15.1.ebuild b/dev-python/scipy/scipy-1.15.1.ebuild new file mode 100644 index 000000000000..ac7448bc5b42 --- /dev/null +++ b/dev-python/scipy/scipy-1.15.1.ebuild @@ -0,0 +1,163 @@ +# Copyright 1999-2025 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +FORTRAN_NEEDED=fortran +DISTUTILS_EXT=1 +DISTUTILS_USE_PEP517=meson-python +PYTHON_COMPAT=( pypy3 python3_{10..13} ) +PYTHON_REQ_USE="threads(+)" + +inherit flag-o-matic fortran-2 distutils-r1 + +DESCRIPTION="Scientific algorithms library for Python" +HOMEPAGE=" + https://scipy.org/ + https://github.com/scipy/scipy/ + https://pypi.org/project/scipy/ +" + +if [[ ${PV} == *9999* ]] ; then + inherit git-r3 + + # Need submodules, so git for now. + EGIT_REPO_URI="https://github.com/scipy/scipy" + EGIT_BRANCH="maintenance/$(ver_cut 1-2).x" + EGIT_SUBMODULES=( '*' ) +else + inherit pypi + + # Upstream is often behind with doc updates + DOC_PV=${PV} + + SRC_URI+=" + doc? ( + https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip + )" + + if [[ ${PV} != *rc* ]] ; then + KEYWORDS="~amd64 ~arm ~arm64 ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86" + fi +fi + +LICENSE="BSD LGPL-2" +SLOT="0" +IUSE="doc +fortran test-rust" + +# umfpack is technically optional but it's preferred to have it available. +DEPEND=" + >=dev-python/numpy-1.23.5:=[lapack,${PYTHON_USEDEP}] + sci-libs/arpack:= + sci-libs/umfpack + virtual/cblas + >=virtual/lapack-3.8 +" +RDEPEND=" + ${DEPEND} + dev-python/pillow[${PYTHON_USEDEP}] +" +BDEPEND=" + dev-lang/swig + >=dev-python/cython-3.0.8[${PYTHON_USEDEP}] + >=dev-python/meson-python-0.15.0[${PYTHON_USEDEP}] + >=dev-python/pybind11-2.13.2[${PYTHON_USEDEP}] + >=dev-build/meson-1.1.0 + !kernel_Darwin? ( dev-util/patchelf ) + virtual/pkgconfig + doc? ( app-arch/unzip ) + fortran? ( + >=dev-python/pythran-0.16.0[${PYTHON_USEDEP}] + ) + test? ( + >=dev-python/hypothesis-6.30[${PYTHON_USEDEP}] + ) + test-rust? ( + dev-python/pooch[${PYTHON_USEDEP}] + ) +" + +EPYTEST_XDIST=1 +distutils_enable_tests pytest + +src_unpack() { + default + + if use doc; then + unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die + fi +} + +python_configure_all() { + DISTUTILS_ARGS=( + -Dblas=blas + -Dlapack=lapack + -Duse-pythran=$(usex fortran true false) + ) + + # https://bugs.gentoo.org/932721 + has_version '>=dev-python/numpy-2.0.0' && filter-lto +} + +python_test() { + cd "${BUILD_DIR}/install$(python_get_sitedir)" || die + + local EPYTEST_DESELECT=( + # Network + scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all + scipy/datasets/tests/test_data.py::TestDatasets::test_ascent + scipy/datasets/tests/test_data.py::TestDatasets::test_face + scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram + + # Precision issue with diff. blas? + scipy/optimize/tests/test__basinhopping.py::Test_Metropolis::test_gh7799 + + # Crashes with assertion, not a regression + # https://github.com/scipy/scipy/issues/19321 + scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object + + # timeouts + scipy/sparse/linalg/tests/test_propack.py::test_examples + # hang or incredibly slow + scipy/optimize/tests/test_lsq_linear.py::TestBVLS::test_large_rank_deficient + scipy/optimize/tests/test_lsq_linear.py::TestTRF::test_large_rank_deficient + + # TODO + scipy/optimize/tests/test_minimize_constrained.py::TestTrustRegionConstr::test_list_of_problems + ) + local EPYTEST_IGNORE=() + + if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then + EPYTEST_IGNORE+=( + scipy/datasets/tests/test_data.py + ) + fi + + case ${EPYTHON} in + pypy3) + EPYTEST_DESELECT+=( + # fd leaks in tests + # https://github.com/scipy/scipy/issues/19553 + scipy/fft/_pocketfft/tests/test_real_transforms.py + # TODO + 'scipy/special/tests/test_data.py::test_boost[]' + # missing dict.__ror__ + # https://github.com/pypy/pypy/issues/4934 + 'scipy/sparse/tests/test_dok.py::test_dunder_ror[dok_matrix]' + # mismatched exception message + scipy/optimize/tests/test_hessian_update_strategy.py::TestHessianUpdateStrategy::test_initialize_catch_illegal + ) + ;; + esac + + local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1 + # avoid other stuff being multithreaded when using xdist + local -x PYTHON_CPU_COUNT=1 + epytest scipy +} + +python_install_all() { + use doc && local HTML_DOCS=( "${WORKDIR}"/html/. ) + + distutils-r1_python_install_all +}