[gentoo-commits] repo/gentoo:master commit in: sci-biology/sim4/

[gentoo-commits] repo/gentoo:master commit in: sci-biology/sim4/

[David Seifert]

commit:     03ccb71c85392ce397e10386bac30b8378f036e5
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Feb 25 20:31:11 2017 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Feb 25 20:35:20 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=03ccb71c

sci-biology/sim4: Remove old

Package-Manager: Portage-2.3.3, Repoman-2.3.1

 sci-biology/sim4/sim4-20030921-r1.ebuild | 26 --------------------------
 sci-biology/sim4/sim4-20030921.ebuild    | 19 -------------------
 2 files changed, 45 deletions(-)

diff --git a/sci-biology/sim4/sim4-20030921-r1.ebuild b/sci-biology/sim4/sim4-20030921-r1.ebuild
deleted file mode 100644
index 178bf92ab5..0000000000
--- a/sci-biology/sim4/sim4-20030921-r1.ebuild
+++ /dev/null
@@ -1,26 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-inherit toolchain-funcs
-
-DESCRIPTION="A program to align cDNA and genomic DNA"
-HOMEPAGE="http://globin.cse.psu.edu/html/docs/sim4.html"
-SRC_URI="http://globin.cse.psu.edu/ftp/dist/sim4/sim4.tar.gz"
-LICENSE="GPL-2"
-
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86"
-IUSE=""
-
-S=${WORKDIR}/${PN}.2003-09-21
-
-src_compile() {
-	echo "$(tc-getCC) -o ${PN} ${LDFLAGS} -I. ${CFLAGS} *.c -lm"
-	$(tc-getCC) -o ${PN} ${LDFLAGS} -I. ${CFLAGS} *.c -lm || die
-}
-
-src_install() {
-	dobin ${PN} || die
-	dodoc README.* VERSION || die
-}

diff --git a/sci-biology/sim4/sim4-20030921.ebuild b/sci-biology/sim4/sim4-20030921.ebuild
deleted file mode 100644
index 12d5231aa1..0000000000
--- a/sci-biology/sim4/sim4-20030921.ebuild
+++ /dev/null
@@ -1,19 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-DESCRIPTION="A program to align cDNA and genomic DNA"
-HOMEPAGE="http://globin.cse.psu.edu/html/docs/sim4.html"
-SRC_URI="http://globin.cse.psu.edu/ftp/dist/sim4/sim4.tar.gz"
-LICENSE="GPL-2"
-
-SLOT="0"
-KEYWORDS="x86 ~ppc"
-IUSE=""
-
-S="${WORKDIR}/${PN}.2003-09-21"
-
-src_install() {
-	dobin sim4 || die
-	dodoc README.psublast README.sim4 VERSION || die
-}

[gentoo-commits] repo/gentoo:master commit in: sci-biology/sim4/

[David Seifert]

commit:     4910baea1319791ff5c0ba23a879f757d4d1169b
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Aug 17 11:19:13 2019 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Aug 17 11:19:13 2019 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4910baea

sci-biology/sim4: [QA] Version the distfile

Package-Manager: Portage-2.3.71, Repoman-2.3.17
Signed-off-by: David Seifert <soap <AT> gentoo.org>

 sci-biology/sim4/Manifest                | 2 +-
 sci-biology/sim4/sim4-20030921-r2.ebuild | 6 +++---
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/sci-biology/sim4/Manifest b/sci-biology/sim4/Manifest
index 9a74c9b9694..a9548f107ec 100644
--- a/sci-biology/sim4/Manifest
+++ b/sci-biology/sim4/Manifest
@@ -1 +1 @@
-DIST sim4.tar.gz 60814 BLAKE2B 2a6aeaf56cbec7b3d5e8cb0c0405afd3b1325977d1b68ba319347dbc38461bde9bdb028e92d8b463a593a2fdc8d72d65db27c8e30462901ce8921632201ad038 SHA512 de7ee4094830262cb7ea8ed2f4573beed96df4b12f2915f669c52fd3fa40f5a4894cd94224e575bfb2588f9a6f19c0b73a38d6209d92a1dc644639a4927aa6b5
+DIST sim4-20030921.tar.gz 60814 BLAKE2B 2a6aeaf56cbec7b3d5e8cb0c0405afd3b1325977d1b68ba319347dbc38461bde9bdb028e92d8b463a593a2fdc8d72d65db27c8e30462901ce8921632201ad038 SHA512 de7ee4094830262cb7ea8ed2f4573beed96df4b12f2915f669c52fd3fa40f5a4894cd94224e575bfb2588f9a6f19c0b73a38d6209d92a1dc644639a4927aa6b5

diff --git a/sci-biology/sim4/sim4-20030921-r2.ebuild b/sci-biology/sim4/sim4-20030921-r2.ebuild
index 204ec82210a..9ea005c9a35 100644
--- a/sci-biology/sim4/sim4-20030921-r2.ebuild
+++ b/sci-biology/sim4/sim4-20030921-r2.ebuild
@@ -1,13 +1,13 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
 inherit toolchain-funcs
 
 DESCRIPTION="A program to align cDNA and genomic DNA"
 HOMEPAGE="http://globin.cse.psu.edu/html/docs/sim4.html"
-SRC_URI="http://globin.cse.psu.edu/ftp/dist/sim4/sim4.tar.gz"
+SRC_URI="mirror://gentoo/${PN}.tar.gz -> ${P}.tar.gz"
 
 LICENSE="GPL-2"
 SLOT="0"

[gentoo-commits] repo/gentoo:master commit in: sci-biology/sim4/

[Andrew Ammerlaan]

commit:     c57e8e68f3470545dfcf294030b17cd1ee50c9aa
Author:     Filip Kobierski <fkobi <AT> pm <DOT> me>
AuthorDate: Wed Jul 31 10:33:01 2024 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Mon Sep 23 14:51:02 2024 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c57e8e68

sci-biology/sim4: fix pkgcheck issues

Signed-off-by: Filip Kobierski <fkobi <AT> pm.me>
Closes: https://github.com/gentoo/gentoo/pull/37844
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 sci-biology/sim4/sim4-20030921-r2.ebuild | 6 ++----
 1 file changed, 2 insertions(+), 4 deletions(-)

diff --git a/sci-biology/sim4/sim4-20030921-r2.ebuild b/sci-biology/sim4/sim4-20030921-r2.ebuild
index 1e1b725f7910..64c0e64d19ef 100644
--- a/sci-biology/sim4/sim4-20030921-r2.ebuild
+++ b/sci-biology/sim4/sim4-20030921-r2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2024 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
@@ -8,13 +8,11 @@ inherit toolchain-funcs
 DESCRIPTION="A program to align cDNA and genomic DNA"
 HOMEPAGE="http://globin.cse.psu.edu/html/docs/sim4.html"
 SRC_URI="mirror://gentoo/${P}.tar.gz"
+S="${WORKDIR}/${PN}.2003-09-21"
 
 LICENSE="GPL-2"
 SLOT="0"
 KEYWORDS="~amd64 ~ppc ~x86"
-IUSE=""
-
-S=${WORKDIR}/${PN}.2003-09-21
 
 PATCHES=( "${FILESDIR}"/${PN}-20030921-fix-build-system.patch )