* [gentoo-commits] repo/gentoo:master commit in: sci-biology/clustalx/
@ 2024-09-23 14:51 Andrew Ammerlaan
0 siblings, 0 replies; 5+ messages in thread
From: Andrew Ammerlaan @ 2024-09-23 14:51 UTC (permalink / raw
To: gentoo-commits
commit: debd83c2c214825333235007b85a2898982f27b6
Author: Filip Kobierski <fkobi <AT> pm <DOT> me>
AuthorDate: Wed Jul 31 10:32:26 2024 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Mon Sep 23 14:51:01 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=debd83c2
sci-biology/clustalx: remove empty IUSE
Signed-off-by: Filip Kobierski <fkobi <AT> pm.me>
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/clustalx/clustalx-2.1-r3.ebuild | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/sci-biology/clustalx/clustalx-2.1-r3.ebuild b/sci-biology/clustalx/clustalx-2.1-r3.ebuild
index fa956bd186e8..ae15401a3488 100644
--- a/sci-biology/clustalx/clustalx-2.1-r3.ebuild
+++ b/sci-biology/clustalx/clustalx-2.1-r3.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2023 Gentoo Authors
+# Copyright 1999-2024 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -14,7 +14,6 @@ SRC_URI="
LICENSE="GPL-3 LGPL-3"
SLOT="0"
KEYWORDS="amd64 ~x86"
-IUSE=""
DEPEND="
dev-qt/qtcore:5
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/clustalx/
@ 2020-05-21 19:42 Andreas Sturmlechner
0 siblings, 0 replies; 5+ messages in thread
From: Andreas Sturmlechner @ 2020-05-21 19:42 UTC (permalink / raw
To: gentoo-commits
commit: 142e02c1094e564f0be9d371a7eb1d03a4130676
Author: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
AuthorDate: Thu May 21 19:42:19 2020 +0000
Commit: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
CommitDate: Thu May 21 19:42:19 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=142e02c1
sci-biology/clustalx: EAPI-7 bump, update HOMEPAGE
Package-Manager: Portage-2.3.99, Repoman-2.3.22
Signed-off-by: Andreas Sturmlechner <asturm <AT> gentoo.org>
sci-biology/clustalx/clustalx-2.1-r3.ebuild | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/sci-biology/clustalx/clustalx-2.1-r3.ebuild b/sci-biology/clustalx/clustalx-2.1-r3.ebuild
index 4a3199f352c..bd9b57aabe7 100644
--- a/sci-biology/clustalx/clustalx-2.1-r3.ebuild
+++ b/sci-biology/clustalx/clustalx-2.1-r3.ebuild
@@ -1,12 +1,12 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=7
inherit desktop qmake-utils
DESCRIPTION="Graphical interface for the ClustalW multiple alignment program"
-HOMEPAGE="http://www.ebi.ac.uk/tools/clustalw2/"
+HOMEPAGE="https://www.ebi.ac.uk/Tools/msa/clustalw2/"
SRC_URI="
http://www.clustal.org/download/current/${P}.tar.gz
https://dev.gentoo.org/~jlec/distfiles/${PN}.png.xz"
@@ -40,7 +40,7 @@ src_prepare() {
-e "s|clustalx.hlp|${EPREFIX}/usr/share/${PN}/clustalx.hlp|" \
-i HelpDisplayWidget.cpp || \
die "Failed to patch help file location."
- rm -rf usr || die
+ rm -r usr || die
}
src_configure() {
^ permalink raw reply related [flat|nested] 5+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: sci-biology/clustalx/
@ 2018-03-18 9:37 Andreas Sturmlechner
0 siblings, 0 replies; 5+ messages in thread
From: Andreas Sturmlechner @ 2018-03-18 9:37 UTC (permalink / raw
To: gentoo-commits
commit: 5437c70c633092ac8a07e8e1a900a0274cfb73f6
Author: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
AuthorDate: Sun Mar 18 00:50:49 2018 +0000
Commit: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
CommitDate: Sun Mar 18 09:37:30 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5437c70c
sci-biology/clustalx: Drop Qt4-based
Package-Manager: Portage-2.3.24, Repoman-2.3.6
sci-biology/clustalx/clustalx-2.1-r1.ebuild | 42 ------------------------
sci-biology/clustalx/clustalx-2.1-r2.ebuild | 50 -----------------------------
2 files changed, 92 deletions(-)
diff --git a/sci-biology/clustalx/clustalx-2.1-r1.ebuild b/sci-biology/clustalx/clustalx-2.1-r1.ebuild
deleted file mode 100644
index 1d3ce97d942..00000000000
--- a/sci-biology/clustalx/clustalx-2.1-r1.ebuild
+++ /dev/null
@@ -1,42 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit eutils qt4-r2
-
-DESCRIPTION="Graphical interface for the ClustalW multiple alignment program"
-HOMEPAGE="http://www.ebi.ac.uk/tools/clustalw2/"
-SRC_URI="http://www.clustal.org/download/current/${P}.tar.gz"
-
-LICENSE="GPL-3 LGPL-3"
-SLOT="0"
-KEYWORDS="amd64 x86"
-IUSE=""
-
-DEPEND="
- dev-qt/qtcore:4
- dev-qt/qtgui:4"
-RDEPEND="${DEPEND}
- >=sci-biology/clustalw-${PV}"
-
-src_prepare() {
- sed \
- -e "s|colprot.xml|${EPREFIX}/usr/share/${PN}/colprot.xml|" \
- -e "s|coldna.xml|${EPREFIX}/usr/share/${PN}/coldna.xml|" \
- -e "s|colprint.xml|${EPREFIX}/usr/share/${PN}/colprint.xml|" \
- -i ClustalQtParams.h || \
- die "Failed to patch shared files location."
- sed \
- -e "s|clustalx.hlp|${EPREFIX}/usr/share/${PN}/clustalx.hlp|" \
- -i HelpDisplayWidget.cpp || \
- die "Failed to patch help file location."
- rm -rf usr || die
-}
-
-src_install() {
- dobin clustalx
- insinto /usr/share/${PN}
- doins colprot.xml coldna.xml colprint.xml clustalx.hlp
- make_desktop_entry ${PN} ClustalX
-}
diff --git a/sci-biology/clustalx/clustalx-2.1-r2.ebuild b/sci-biology/clustalx/clustalx-2.1-r2.ebuild
deleted file mode 100644
index 6e9643755b6..00000000000
--- a/sci-biology/clustalx/clustalx-2.1-r2.ebuild
+++ /dev/null
@@ -1,50 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit eutils qmake-utils
-
-DESCRIPTION="Graphical interface for the ClustalW multiple alignment program"
-HOMEPAGE="http://www.ebi.ac.uk/tools/clustalw2/"
-SRC_URI="
- http://www.clustal.org/download/current/${P}.tar.gz
- https://dev.gentoo.org/~jlec/distfiles/${PN}.png.xz"
-
-LICENSE="GPL-3 LGPL-3"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND="
- dev-qt/qtcore:4
- dev-qt/qtgui:4"
-RDEPEND="${DEPEND}
- >=sci-biology/clustalw-${PV}"
-
-src_prepare() {
- sed \
- -e "s|colprot.xml|${EPREFIX}/usr/share/${PN}/colprot.xml|" \
- -e "s|coldna.xml|${EPREFIX}/usr/share/${PN}/coldna.xml|" \
- -e "s|colprint.xml|${EPREFIX}/usr/share/${PN}/colprint.xml|" \
- -i ClustalQtParams.h || \
- die "Failed to patch shared files location."
- sed \
- -e "s|clustalx.hlp|${EPREFIX}/usr/share/${PN}/clustalx.hlp|" \
- -i HelpDisplayWidget.cpp || \
- die "Failed to patch help file location."
- rm -rf usr || die
- default
-}
-
-src_configure() {
- eqmake4
-}
-
-src_install() {
- dobin clustalx
- insinto /usr/share/${PN}
- doins colprot.xml coldna.xml colprint.xml clustalx.hlp
- make_desktop_entry ${PN} ClustalX
- doicon "${WORKDIR}"/${PN}.png
-}
^ permalink raw reply related [flat|nested] 5+ messages in thread* [gentoo-commits] repo/gentoo:master commit in: sci-biology/clustalx/
@ 2018-03-17 10:49 Mikle Kolyada
0 siblings, 0 replies; 5+ messages in thread
From: Mikle Kolyada @ 2018-03-17 10:49 UTC (permalink / raw
To: gentoo-commits
commit: 750731c17217ec7097418ab6458efbff689c1d6c
Author: Mikle Kolyada <zlogene <AT> gentoo <DOT> org>
AuthorDate: Sat Mar 17 10:49:46 2018 +0000
Commit: Mikle Kolyada <zlogene <AT> gentoo <DOT> org>
CommitDate: Sat Mar 17 10:49:46 2018 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=750731c1
sci-biology/clustalx: amd64 stable wrt bug #644726
Package-Manager: Portage-2.3.24, Repoman-2.3.6
sci-biology/clustalx/clustalx-2.1-r3.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/clustalx/clustalx-2.1-r3.ebuild b/sci-biology/clustalx/clustalx-2.1-r3.ebuild
index 0f9366bee7f..5fe34efb5f8 100644
--- a/sci-biology/clustalx/clustalx-2.1-r3.ebuild
+++ b/sci-biology/clustalx/clustalx-2.1-r3.ebuild
@@ -13,7 +13,7 @@ SRC_URI="
LICENSE="GPL-3 LGPL-3"
SLOT="0"
-KEYWORDS="~amd64 ~x86"
+KEYWORDS="amd64 ~x86"
IUSE=""
DEPEND="
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/clustalx/
@ 2017-02-12 19:51 Justin Lecher
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2017-02-12 19:51 UTC (permalink / raw
To: gentoo-commits
commit: bb90daa9714cb7cad3e895b5ef0341a8e48dcd2e
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Feb 12 19:51:33 2017 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Feb 12 19:51:50 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bb90daa9
sci-biology/clustalx: Install icon
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=608716
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/clustalx/Manifest | 1 +
sci-biology/clustalx/clustalx-2.1-r2.ebuild | 51 +++++++++++++++++++++++++++++
2 files changed, 52 insertions(+)
diff --git a/sci-biology/clustalx/Manifest b/sci-biology/clustalx/Manifest
index acbf2db299..1c523a34f2 100644
--- a/sci-biology/clustalx/Manifest
+++ b/sci-biology/clustalx/Manifest
@@ -1 +1,2 @@
DIST clustalx-2.1.tar.gz 341649 SHA256 e10adb728c320598a165ca529f1aa3d2560061de0236e0a0926eaca9554afa05 SHA512 e8cbad783722161de6999ab01a91d555fc10db609197a8d2878f91e9d7dc998784c02d2ccb54c4936ee27b41321db6f4f37021221662f483b8b6d945b6e1c026 WHIRLPOOL 6cbe8dcf2be3a535e8ac0ef0b9b476d4429a80bd94b394c0194f46ed039f9ac2b97b0ec2ed680838a0973b3187b2dbc90285733657975e03288b9840ba3d6b15
+DIST clustalx.png.xz 74808 SHA256 7d333fd7e96ebc5709ec061e6be4123aba764a6127133cc8df5452f62e0d1cf3 SHA512 0907710c944fc1b883c58501cd7bc2abbc5bf171495b58dbe9829d60d7c3530c210f89a5bfafc3cec03808ae50f5c9a78ce37b9175c2e37590494e115e8e343a WHIRLPOOL 7d48b4be3ec61d3bd3017a0c0dbf0c3d3970b338cc1050a9c4173d06d268996a733c4a19202fba13e2cd640b72f02ecc9013198a821791edd820f16b5371d234
diff --git a/sci-biology/clustalx/clustalx-2.1-r2.ebuild b/sci-biology/clustalx/clustalx-2.1-r2.ebuild
new file mode 100644
index 0000000000..65e9341a38
--- /dev/null
+++ b/sci-biology/clustalx/clustalx-2.1-r2.ebuild
@@ -0,0 +1,51 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit eutils qmake-utils
+
+DESCRIPTION="Graphical interface for the ClustalW multiple alignment program"
+HOMEPAGE="http://www.ebi.ac.uk/tools/clustalw2/"
+SRC_URI="
+ http://www.clustal.org/download/current/${P}.tar.gz
+ https://dev.gentoo.org/~jlec/distfiles/${PN}.png.xz"
+
+LICENSE="GPL-3 LGPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="
+ dev-qt/qtcore:4
+ dev-qt/qtgui:4"
+RDEPEND="${DEPEND}
+ >=sci-biology/clustalw-${PV}"
+
+src_prepare() {
+ sed \
+ -e "s|colprot.xml|${EPREFIX}/usr/share/${PN}/colprot.xml|" \
+ -e "s|coldna.xml|${EPREFIX}/usr/share/${PN}/coldna.xml|" \
+ -e "s|colprint.xml|${EPREFIX}/usr/share/${PN}/colprint.xml|" \
+ -i ClustalQtParams.h || \
+ die "Failed to patch shared files location."
+ sed \
+ -e "s|clustalx.hlp|${EPREFIX}/usr/share/${PN}/clustalx.hlp|" \
+ -i HelpDisplayWidget.cpp || \
+ die "Failed to patch help file location."
+ rm -rf usr || die
+ default
+}
+
+src_configure() {
+ eqmake4
+}
+
+src_install() {
+ dobin clustalx
+ insinto /usr/share/${PN}
+ doins colprot.xml coldna.xml colprint.xml clustalx.hlp
+ make_desktop_entry ${PN} ClustalX
+ doicon "${WORKDIR}"/${PN}.png
+}
^ permalink raw reply related [flat|nested] 5+ messages in thread
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