* [gentoo-commits] repo/gentoo:master commit in: profiles/, sci-chemistry/aqua/, sci-chemistry/aqua/files/
@ 2024-07-19 11:34 Arthur Zamarin
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From: Arthur Zamarin @ 2024-07-19 11:34 UTC (permalink / raw
To: gentoo-commits
commit: 98a47e6245026da91950516c707131481cfdb80d
Author: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
AuthorDate: Fri Jul 19 11:32:32 2024 +0000
Commit: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
CommitDate: Fri Jul 19 11:34:42 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=98a47e62
sci-chemistry/aqua: treeclean
Bug: https://bugs.gentoo.org/928068
Signed-off-by: Arthur Zamarin <arthurzam <AT> gentoo.org>
profiles/package.mask | 1 -
sci-chemistry/aqua/Manifest | 2 -
sci-chemistry/aqua/aqua-3.2-r3.ebuild | 97 ---------------------------
sci-chemistry/aqua/files/aqua-3.2-flags.patch | 84 -----------------------
sci-chemistry/aqua/metadata.xml | 8 ---
5 files changed, 192 deletions(-)
diff --git a/profiles/package.mask b/profiles/package.mask
index 0d30b2f1a714..609909201453 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -284,7 +284,6 @@ sci-astronomy/predict
# fetch restricted, and the file you download from upstream
# doesn't match size and manifests. aqua depends on procheck.
# Removal on 2024-07-14. Bugs #928067, #928068.
-sci-chemistry/aqua
sci-chemistry/procheck
# Viorel Munteanu <ceamac@gentoo.org> (2024-06-11)
diff --git a/sci-chemistry/aqua/Manifest b/sci-chemistry/aqua/Manifest
deleted file mode 100644
index a6e19c27dff6..000000000000
--- a/sci-chemistry/aqua/Manifest
+++ /dev/null
@@ -1,2 +0,0 @@
-DIST aqua-3.2-nmr_manual.tar.gz 632031 BLAKE2B 1f595a111af4b5e91fc059b5af590a6c37a44654fcae42e6003b40cf7fdf542cb772d3ef25bf2475455ce8638cd0aebcbbc8c66bb57688ce919af2eac9b535cb SHA512 9b125b03507afebf15301c893efffae9be4e9695b9c577e5c2a80e83b620d04b4c27e867adf06336afa1556eddc96aa97de936028e503b1e85e156542664da0f
-DIST aqua3.2.tar.gz 688408 BLAKE2B 898e0e3bbc4ff7b6ce8a8128ce6ffef45db607c74e2d78a70cefc26818d39049e4d18159b65250a3651112f64318ccce838037e563d3a985be7ef369d89b594e SHA512 1939f662a68122da613368aa106d7a31525903014420035eba9d10c3bd99b04d654d156328d308673003854233a02c1da48c036f3187fa1f0f303cc5928edd6a
diff --git a/sci-chemistry/aqua/aqua-3.2-r3.ebuild b/sci-chemistry/aqua/aqua-3.2-r3.ebuild
deleted file mode 100644
index 78d987ec1460..000000000000
--- a/sci-chemistry/aqua/aqua-3.2-r3.ebuild
+++ /dev/null
@@ -1,97 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit fortran-2 toolchain-funcs
-
-DESCRIPTION="Program suite in this distribution calculates restraint violations"
-HOMEPAGE="http://www.biochem.ucl.ac.uk/~roman/procheck/procheck.html"
-SRC_URI="
- ${PN}${PV}.tar.gz
- doc? ( ${P}-nmr_manual.tar.gz )"
-
-SLOT="0"
-LICENSE="procheck"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="doc examples"
-
-RDEPEND="sci-chemistry/procheck"
-DEPEND="app-shells/tcsh"
-
-RESTRICT="fetch"
-
-S="${WORKDIR}"/${PN}${PV}
-
-PATCHES=(
- "${FILESDIR}"/${P}-flags.patch
-)
-
-pkg_nofetch() {
- elog "Please visit http://www.ebi.ac.uk/thornton-srv/software/PROCHECK/download.html"
- elog "And follow the instructions for downloading the following into your DISTDIR"
- elog "directory:"
- elog " ${PN}${PV}.tar.gz"
- if use doc; then
- elog " nmr_manual.tar.gz -> ${P}-nmr_manual.tar.gz"
- fi
-}
-
-src_prepare() {
- sed \
- -e 's:nawk:gawk:g' \
- -e "s:/bin/gawk:${EPREFIX}/usr/bin/gawk:g" \
- -e "s:/usr/local/bin/perl:${EPREFIX}/usr/bin/perl:g" \
- -i $(find . -type f) || die
- default
-}
-
-src_compile() {
- cd src || die
- emake \
- MYROOT="${WORKDIR}" \
- CC="$(tc-getCC)" \
- FC="$(tc-getFC)" \
- CFLAGS="${CFLAGS} -I../sub/lib" \
- FFLAGS="${FFLAGS}" \
- LDFLAGS="${LDFLAGS}" \
- exth
- emake \
- MYROOT="${WORKDIR}" \
- CC="$(tc-getCC)" \
- FC="$(tc-getFC)" \
- CFLAGS="${CFLAGS} -I../sub/lib" \
- FFLAGS="${FFLAGS}" \
- LDFLAGS="${LDFLAGS}"
-}
-
-src_install() {
- rm -f scripts/conv* || die
- dobin bin/* scripts/*
- dosym AquaWhat /usr/bin/qwhat
- dosym AquaHow /usr/bin/qhow
- dosym AquaPseudo /usr/bin/qpseudo
- dosym AquaDist /usr/bin/qdist
- dosym AquaCalc /usr/bin/qcalc
- dosym AquaAssign /usr/bin/qassign
- dosym AquaRedun /usr/bin/qredun
- dosym AquaCompl /usr/bin/qcompl
-
- dodoc HISTORY HOW_TO_USE NEW README doc/*
- dohtml html/*
-
- insinto /usr/share/${PN}
- doins data/*
- if use examples; then
- doins -r exmpls
- fi
-
- if use doc; then
- dohtml -r manual
- fi
-
- cat >> "${T}"/34aqua <<- EOF
- AQUADATADIR="${EPREFIX}/usr/share/${PN}"
- EOF
- doenvd "${T}"/34aqua
-}
diff --git a/sci-chemistry/aqua/files/aqua-3.2-flags.patch b/sci-chemistry/aqua/files/aqua-3.2-flags.patch
deleted file mode 100644
index a60841b8ce08..000000000000
--- a/sci-chemistry/aqua/files/aqua-3.2-flags.patch
+++ /dev/null
@@ -1,84 +0,0 @@
-diff --git a/src/makefile b/src/makefile
-index 3113471..dd7a320 100644
---- a/src/makefile
-+++ b/src/makefile
-@@ -176,47 +176,46 @@ nrutil.h:
- # Executable files
-
- $(BIN)/AquaWhat: AquaWhat.o $(OBJECTS) $(R_OBJECTS) $(RNG_OBJECTS)
-- $(CC) -o $(BIN)/AquaWhat AquaWhat.o $(OBJECTS) $(R_OBJECTS) $(RNG_OBJECTS) $(LDFLAGS)
-+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaWhat AquaWhat.o $(OBJECTS) $(R_OBJECTS) $(RNG_OBJECTS)
-
- $(BIN)/AquaHow: AquaHow.o $(OBJECTS) $(R_OBJECTS) AquaFuncts_dr.o $(RNG_OBJECTS)
-- $(CC) -o $(BIN)/AquaHow AquaHow.o $(OBJECTS) $(R_OBJECTS) AquaFuncts_dr.o $(RNG_OBJECTS) $(LDFLAGS)
-+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaHow AquaHow.o $(OBJECTS) $(R_OBJECTS) AquaFuncts_dr.o $(RNG_OBJECTS)
-
- $(BIN)/AquaPseudo: AquaPseudo.o $(OBJECTS) $(R_OBJECTS)
-- $(CC) -o $(BIN)/AquaPseudo AquaPseudo.o $(OBJECTS) $(R_OBJECTS) $(LDFLAGS)
-+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaPseudo AquaPseudo.o $(OBJECTS) $(R_OBJECTS)
-
- $(BIN)/AquaDist: AquaDist.o $(OBJECTS)
-- $(CC) -o $(BIN)/AquaDist AquaDist.o $(OBJECTS) $(LDFLAGS) -lm
-+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaDist AquaDist.o $(OBJECTS) -lm
-
- $(BIN)/AquaCalc: AquaCalc.o $(OBJECTS) $(RNG_OBJECTS)
-- $(CC) -o $(BIN)/AquaCalc AquaCalc.o $(OBJECTS) $(RNG_OBJECTS) $(LDFLAGS) -lm
-+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaCalc AquaCalc.o $(OBJECTS) $(RNG_OBJECTS) -lm
-
- $(BIN)/AquaAssign: AquaAssign.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS)
-- $(CC) -o $(BIN)/AquaAssign AquaAssign.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS) $(LDFLAGS)
-+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaAssign AquaAssign.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS)
-
- $(BIN)/AquaCompl: AquaCompl.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS)
-- $(CC) -o $(BIN)/AquaCompl AquaCompl.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS) $(LDFLAGS) -lm
-+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaCompl AquaCompl.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS) -lm
-
- $(BIN)/AquaRedun: AquaRedun.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS)
-- $(CC) -o $(BIN)/AquaRedun AquaRedun.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS) $(LDFLAGS)
-+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaRedun AquaRedun.o AquaCommon.o $(OBJECTS) $(R_OBJECTS) nrutil.o AquaFuncts_dr.o $(RNG_OBJECTS)
-
- $(BIN)/testnew: testnew.o $(OBJECTS)
-- $(CC) -o $(BIN)/testnew testnew.o $(OBJECTS) $(LDFLAGS)
-+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/testnew testnew.o $(OBJECTS)
-
- $(BIN)/getproj: getproj.c
-- $(CC) -o $(BIN)/getproj -O getproj.c
-+ $(CC) $(CFLAGS) $(LDFLAGS) -o $(BIN)/getproj getproj.c
-
- $(BIN)/AquaPlot: AquaPlot.o $(LIB)/MenuFuncts.o $(LIB)/Functs.o
-- $(CC) -o $(BIN)/AquaPlot AquaPlot.o $(LIB)/MenuFuncts.o $(LIB)/Functs.o $(LDFLAGS)
-+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/AquaPlot AquaPlot.o $(LIB)/MenuFuncts.o $(LIB)/Functs.o
-
- $(BIN)/Qext: Qext.o $(LIB)/MenuFuncts.o $(LIB)/Functs.o
-- $(CC) -o $(BIN)/Qext Qext.o $(LIB)/MenuFuncts.o $(LIB)/Functs.o $(LDFLAGS)
-+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/Qext Qext.o $(LIB)/MenuFuncts.o $(LIB)/Functs.o
-
- $(BIN)/StarTest: StarTest.o
-- $(CC) -o $(BIN)/StarTest StarTest.o $(LDFLAGS) $(STARFLAGS) $(STARLIBS)
-+ $(CC) $(LDFLAGS) $(CFLAGS) -o $(BIN)/StarTest StarTest.o $(STARFLAGS) $(STARLIBS)
-
- exth: exth.f
-- f77 -o exth -O2 exth.f
-- strip exth
-+ $(FC) $(FFLAGS) $(LDFLAGS) -o exth -O2 exth.f
-
-
- # Object files
-@@ -269,7 +268,7 @@ AquaCommon.o: AquaCommon.c AquaCommon.h nrutil.h \
- $(CC) -c AquaCommon.c $(CFLAGS)
-
- nrutil.o: nrutil.c nrutil.h
-- $(CC) -c nrutil.c -DANSI
-+ $(CC) $(CFLAGS) -c nrutil.c -DANSI
-
- AquaFuncts.o: AquaFuncts.c AquaFuncts.h AquaFuncts_cv.h AquaFuncts_io.h\
- AquaStrucset.h AquaFiles.h\
-@@ -319,7 +318,7 @@ $(LIB)/MenuFuncts.o: $(LIB)/MenuFuncts.c $(LIB)/MenuTypes.h $(LIB)/MenuFuncts.h\
- cd $(LIB); $(CC) -c MenuFuncts.c $(CFLAGS)
-
- cv_subs.o: cv_subs.f
-- f77 -c cv_subs.f $(FFLAGS)
-+ $(FC) -c cv_subs.f $(FFLAGS)
-
- Qext.o: Qext.c Qext.h\
- $(LIB)/MenuFuncts.h $(LIB)/Functs.h $(G_HEADERS)
diff --git a/sci-chemistry/aqua/metadata.xml b/sci-chemistry/aqua/metadata.xml
deleted file mode 100644
index d4ff1000a775..000000000000
--- a/sci-chemistry/aqua/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-chemistry@gentoo.org</email>
- <name>Gentoo Chemistry Project</name>
- </maintainer>
-</pkgmetadata>
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