From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (2048 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id EECEE1581C1 for ; Sun, 14 Jul 2024 15:27:19 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 3E89AE2B3E; Sun, 14 Jul 2024 15:27:19 +0000 (UTC) Received: from smtp.gentoo.org (dev.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 259C9E2B3E for ; Sun, 14 Jul 2024 15:27:19 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 69E19341256 for ; Sun, 14 Jul 2024 15:27:18 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id AA6621E29 for ; Sun, 14 Jul 2024 15:27:15 +0000 (UTC) From: "Haelwenn Monnier" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Haelwenn Monnier" Message-ID: <1720942030.e9427f8954a1efb68fa1c95e9e111f226e9500a1.lanodan@gentoo> Subject: [gentoo-commits] repo/proj/guru:master commit in: sci-biology/cmdock/ X-VCS-Repository: repo/proj/guru X-VCS-Files: sci-biology/cmdock/cmdock-0.2.0.ebuild X-VCS-Directories: sci-biology/cmdock/ X-VCS-Committer: lanodan X-VCS-Committer-Name: Haelwenn Monnier X-VCS-Revision: e9427f8954a1efb68fa1c95e9e111f226e9500a1 X-VCS-Branch: master Date: Sun, 14 Jul 2024 15:27:15 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 971dcfd5-514c-4d73-a11c-9cade30a13ea X-Archives-Hash: a4f1d31c80ed8d74fcc129f5e053e3a0 commit: e9427f8954a1efb68fa1c95e9e111f226e9500a1 Author: Anna (cybertailor) Vyalkova sysrq in> AuthorDate: Tue Jul 9 15:47:57 2024 +0000 Commit: Haelwenn Monnier hacktivis me> CommitDate: Sun Jul 14 07:27:10 2024 +0000 URL: https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=e9427f89 sci-biology/cmdock: drop 0.2.0-r0 Signed-off-by: Anna (cybertailor) Vyalkova sysrq.in> sci-biology/cmdock/cmdock-0.2.0.ebuild | 112 --------------------------------- 1 file changed, 112 deletions(-) diff --git a/sci-biology/cmdock/cmdock-0.2.0.ebuild b/sci-biology/cmdock/cmdock-0.2.0.ebuild deleted file mode 100644 index 3d1c2f035..000000000 --- a/sci-biology/cmdock/cmdock-0.2.0.ebuild +++ /dev/null @@ -1,112 +0,0 @@ -# Copyright 2021-2024 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{10..12} ) -BOINC_APP_OPTIONAL="true" -inherit boinc-app flag-o-matic meson optfeature python-any-r1 - -DESCRIPTION="Program for docking ligands to proteins and nucleic acids" -HOMEPAGE="https://gitlab.com/Jukic/cmdock" -SRC_URI="https://gitlab.com/Jukic/${PN}/-/archive/v${PV}/${PN}-v${PV}.tar.bz2" -S="${WORKDIR}/${PN}-v${PV}" - -LICENSE="LGPL-3 ZLIB" -SLOT="0/${PV}" -KEYWORDS="~amd64" -IUSE="apidoc boinc cpu_flags_x86_sse2 doc test" -RESTRICT="!test? ( test )" - -RDEPEND=" - boinc? ( sci-misc/boinc-wrapper ) -" -DEPEND=" - dev-cpp/eigen:3 - dev-cpp/indicators - >=dev-cpp/pcg-cpp-0.98.1_p20210406-r1 - dev-libs/cxxopts -" -BDEPEND=" - apidoc? ( - app-text/doxygen - dev-texlive/texlive-fontutils - ) - doc? ( - $(python_gen_any_dep ' - dev-python/insipid-sphinx-theme[${PYTHON_USEDEP}] - dev-python/sphinx[${PYTHON_USEDEP}] - ') - ) - test? ( ${PYTHON_DEPS} ) -" - -DOCS=( README.md changelog.md ) - -BOINC_MASTER_URL="https://www.sidock.si/sidock/" -BOINC_INVITATION_CODE="Crunch_4Science" -BOINC_APP_HELPTEXT=\ -"The easiest way to do something useful with this application -is to attach it to SiDock@home BOINC project." - -INSTALL_PREFIX="${EPREFIX}/opt/${P}" - -python_check_deps() { - use doc || return 0 - - python_has_version "dev-python/sphinx[${PYTHON_USEDEP}]" && - python_has_version "dev-python/insipid-sphinx-theme[${PYTHON_USEDEP}]" -} - -foreach_wrapper_job() { - sed -e "s:@PREFIX@:${INSTALL_PREFIX}:g" -i "${1}" || die -} - -src_prepare() { - default - python_fix_shebang "${S}"/bin -} - -src_configure() { - # very weird directory layout - local emesonargs=( - --prefix="${INSTALL_PREFIX}" - $(meson_use apidoc) - $(meson_use doc) - $(meson_use test tests) - -Ddocdir="${EPREFIX}"/usr/share/doc/${PF} - ) - meson_src_configure - - use cpu_flags_x86_sse2 || append-cppflags "-DBUNDLE_NO_SSE" -} - -src_install() { - meson_src_install - python_optimize "${D}${INSTALL_PREFIX}"/bin - - if use boinc; then - doappinfo "${FILESDIR}"/app_info_${PV}.xml - dowrapper cmdock-l - - # install cmdock executable - exeinto "$(get_project_root)" - exeopts --owner root --group boinc - newexe "${D}${INSTALL_PREFIX}"/bin/cmdock cmdock-${PV} - - # install a blank file - touch "${T}"/docking_out || die - insinto "$(get_project_root)" - insopts --owner root --group boinc - doins "${T}"/docking_out - fi -} - -pkg_postinst() { - optfeature "sdtether.py and sdrmsd.py scripts" "dev-python/numpy sci-chemistry/openbabel[python]" - use boinc && boinc-app_pkg_postinst -} - -pkg_postrm() { - use boinc && boinc-app_pkg_postrm -}