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From: "Michał Górny" <mgorny@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] repo/gentoo:master commit in: dev-python/scipy/files/, dev-python/scipy/
Date: Sat, 13 Jul 2024 19:25:34 +0000 (UTC)	[thread overview]
Message-ID: <1720898727.1981769ec1ed73c7789430d9ce75072ec5daab12.mgorny@gentoo> (raw)

commit:     1981769ec1ed73c7789430d9ce75072ec5daab12
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Sat Jul 13 19:15:42 2024 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Sat Jul 13 19:25:27 2024 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1981769e

dev-python/scipy: Remove old

Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 dev-python/scipy/Manifest                      |   9 --
 dev-python/scipy/files/scipy-1.13.1-test.patch |  46 -------
 dev-python/scipy/scipy-1.11.3-r2.ebuild        | 150 ----------------------
 dev-python/scipy/scipy-1.11.4-r1.ebuild        | 150 ----------------------
 dev-python/scipy/scipy-1.12.0-r1.ebuild        | 151 ----------------------
 dev-python/scipy/scipy-1.13.0.ebuild           | 166 ------------------------
 dev-python/scipy/scipy-1.13.1.ebuild           | 171 -------------------------
 7 files changed, 843 deletions(-)

diff --git a/dev-python/scipy/Manifest b/dev-python/scipy/Manifest
index d0f7b049753a..1e6b60d8065c 100644
--- a/dev-python/scipy/Manifest
+++ b/dev-python/scipy/Manifest
@@ -1,11 +1,2 @@
-DIST scipy-1.11.3.tar.gz 56335652 BLAKE2B 2b35c24522b2bd498b4ebe84a854c8ec1e62917e7b899b3e3526abb9780c1e56f8e776a3bb1eab1bedb17a273fac881e5ffdaac808084a4f5a5f97428bff1029 SHA512 6491c4e479d9f4f02e677396a25ddca947a0dc6c009fc2ec34c658012a6224c0b535f14045bb011fbde9973ea987d184574ed64e6760c31798ec860eb0896fcf
-DIST scipy-1.11.4.tar.gz 56336202 BLAKE2B a2091a1edb54eb73c2de6ed8c62a7e571f37b247c9af50947aa97b739342c96b87b20a82b1a238c859fa532c84249cbadde228366dcea3555e9a506c1ae55031 SHA512 2eb403f6de9723b411d948b8e1b5457078704c605b8e760d42362c82d802e167eaaf701ddb8b480af2bdf2efe4dbf66fcc4e97321519bb8dab19b0e2a8976beb
-DIST scipy-1.12.0.tar.gz 56811768 BLAKE2B 03c142274f1466747935fa54fab427f3a48c1642406211fa1a0f8ad5e0f194baecf76182e0448a0fb647063871483239cd876ce431cd9406e396e6170912ab64 SHA512 376ed94c4caaf782814bb07047fff0b363f7b608a0399697c6e862432333cbe6d3abb351730a574a3f077b3cdd9cb7474090a460baffcfbd5546bcfee309b6e7
-DIST scipy-1.13.0.tar.gz 57204550 BLAKE2B cfbb4e76efae952854e9ff4ed254e9819b58d224906e1ded3c6a914b1e28b5fad15f8bbbb4a9c413969d6e4b1faf4e0038a36729171ff06e640b241a9dd4af94 SHA512 9bd6fd3f76742a07e5bb003edf4c0e3a82edf749077502fbce3d16fe595d455846edcf57db12ec0a9d4792803e974355362d919047414badfcaededf1e4343f7
-DIST scipy-1.13.1.tar.gz 57210720 BLAKE2B d58d673de9b8d6239a3de285982d65ba1baf0ca8b623276c19b85b1f4bb83c56e66c32d7a22d1d602435cfa086b5d56167cac55bdda608590aaddf677844f060 SHA512 28aafdbcae7229a3d11f192683b703cb485d45e4d90413d6564df3d9005bc8fd4df8bd92caffe657666828cd7253e7e0363c0948c74a1b8f3f3b7d4f4cfd9b36
 DIST scipy-1.14.0.tar.gz 58618870 BLAKE2B bf9ed05628b02dc058555402995caae722cf6802bde80387d4e4477ec533589a66ca70b5dd44a32ddac652c7c69300406434b80e7cbc9aee2a78ae6b26ee4c2b SHA512 6579d988a2093602f5fc82203bbb5dc5690a95032484b5d5bd843d1e7995b3b89d802c7b38ec0345c1f3d8e22c98fb92b3982a1eadfcdf63607f929a52b56abf
-DIST scipy-html-1.11.0.zip 50421508 BLAKE2B cb5e4a4f8817a80f54ae73b4a47ba22d2438df46ebfe27ef5fdc2695fdd983226f4ccae925bf82b15d01ced4f4b6807384ecadac5e1aa7700aa887ad06b7d065 SHA512 33718bbd5e828687d93fccc441a53b6a2e8f54ac4952d3b69d4c4668f55cb6ef5aba33df9acda20b2400effa5ae71767b2a5602a365ad2045a6edd24ff89c253
-DIST scipy-html-1.11.2.zip 50435722 BLAKE2B 460c67509a8bf50986f866ee2f90e634af21ddd71508efeef5681c2ee2130c3f79b4b428bc21277bfb310bb45ccad1fb38221ada43620055377cdc4839b9d1e5 SHA512 986a6e37f9e01dc4925ef22af6ff660bae1e4b66e57270262974c207dfb70285e3f8f548774d6e81d5f457b9198c0ba1c06e6d689fe5d54fdea878c1e5a7f797
-DIST scipy-html-1.13.0.zip 65327245 BLAKE2B 5e5ffbf4ff4a28c5a003da0e5170ef5eef1b430ecca0284a89aed5f96f7afc549db001beb2e56b3debbd3527c57b773b25c35579b32d8a6d8e5e97a75db4d38b SHA512 792c32f077d76d47e42d02c5047990a6afdcdc9c31dcc7e9987e7a5aa62c56aec44dcf7d14e3f94ae59f8fb718ce89a2835b87d2aef7a16ce9a534361b7329d7
-DIST scipy-html-1.13.1.zip 65288062 BLAKE2B 4eea1277870fcc0070d543139ef8b786d3c6841835601eb5447fed042d03035edfb556f824ccbf9946f1efa41da75372df1dd3789d045bdbaea7e156010bb8e6 SHA512 fc70eb7fa3763e40f2389ad31e1a78fcd2aa1b3db40927f57a583692143001c8b6a8f3f0ddea47eaf62adb30d1207765d8887a2a53baa1b8ed706b7fb348bbbf
 DIST scipy-html-1.14.0.zip 65723829 BLAKE2B ba47dbf00a5d2a53a9addc5ea68ab18b42f211a018b89aa4b0b57ff0dee02e410a3effc59ddf8fbbc5aa33075d45d86880aed3a14068da5bd7b62ee526199967 SHA512 93be0bafcc64cea1ba130bbcc77c0741acc4f819c84a5030391a22657a1bc63abe8434a2723f66b7ad04c0809dc6d02e3a97ffb8d94bd3d4a4bb759ee796b475

diff --git a/dev-python/scipy/files/scipy-1.13.1-test.patch b/dev-python/scipy/files/scipy-1.13.1-test.patch
deleted file mode 100644
index e10e8551b757..000000000000
--- a/dev-python/scipy/files/scipy-1.13.1-test.patch
+++ /dev/null
@@ -1,46 +0,0 @@
-From 2f930ed7d579837423cf58f30d25d4922e4cef7c Mon Sep 17 00:00:00 2001
-From: Evgeni Burovski <evgeny.burovskiy@gmail.com>
-Date: Thu, 6 Jun 2024 10:01:58 +0300
-Subject: [PATCH] TST: linalg: bump tolerance in TestEig::test_singular
-
-Some assertions have atol/rtol configurable, and one assertion had them
-hardcoded, and that was causing tolerance problems in a Debian build with
-reference LAPACK.
-
-closes https://github.com/scipy/scipy/issues/20911
----
- scipy/linalg/tests/test_decomp.py | 7 ++++---
- 1 file changed, 4 insertions(+), 3 deletions(-)
-
-diff --git a/scipy/linalg/tests/test_decomp.py b/scipy/linalg/tests/test_decomp.py
-index 5e171965a4bd..2c4033360d16 100644
---- a/scipy/linalg/tests/test_decomp.py
-+++ b/scipy/linalg/tests/test_decomp.py
-@@ -181,7 +181,8 @@ def test_gh_3054(self):
-         assert_equal(w, np.inf)
-         assert_allclose(vr, 1)
- 
--    def _check_gen_eig(self, A, B, atol_homog=1e-13, rtol_homog=1e-13):
-+    def _check_gen_eig(self, A, B, atol_homog=1e-13, rtol_homog=1e-13,
-+                                   atol=1e-13, rtol=1e-13):
-         if B is not None:
-             A, B = asarray(A), asarray(B)
-             B0 = B
-@@ -230,7 +231,7 @@ def _check_gen_eig(self, A, B, atol_homog=1e-13, rtol_homog=1e-13):
-         for i in range(res.shape[1]):
-             if np.all(isfinite(res[:, i])):
-                 assert_allclose(res[:, i], 0,
--                                rtol=1e-13, atol=1e-13, err_msg=msg)
-+                                rtol=rtol, atol=atol, err_msg=msg)
- 
-         # try to consistently order eigenvalues, including complex conjugate pairs
-         w_fin = w[isfinite(w)]
-@@ -269,7 +270,7 @@ def test_singular(self):
-                    [24, 35, 18, 21, 22]])
- 
-         with np.errstate(all='ignore'):
--            self._check_gen_eig(A, B, atol_homog=5e-13)
-+            self._check_gen_eig(A, B, atol_homog=5e-13, atol=5e-13)
- 
-     def test_falker(self):
-         # Test matrices giving some Nan generalized eigenvalues.

diff --git a/dev-python/scipy/scipy-1.11.3-r2.ebuild b/dev-python/scipy/scipy-1.11.3-r2.ebuild
deleted file mode 100644
index ada4553734a9..000000000000
--- a/dev-python/scipy/scipy-1.11.3-r2.ebuild
+++ /dev/null
@@ -1,150 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-FORTRAN_NEEDED=fortran
-DISTUTILS_EXT=1
-DISTUTILS_USE_PEP517=meson-python
-PYTHON_COMPAT=( pypy3 python3_{10..12} )
-PYTHON_REQ_USE="threads(+)"
-
-inherit flag-o-matic fortran-2 distutils-r1 multiprocessing
-
-DESCRIPTION="Scientific algorithms library for Python"
-HOMEPAGE="
-	https://scipy.org/
-	https://github.com/scipy/scipy/
-	https://pypi.org/project/scipy/
-"
-
-if [[ ${PV} == *9999* ]] ; then
-	inherit git-r3
-
-	# Need submodules, so git for now.
-	EGIT_REPO_URI="https://github.com/scipy/scipy"
-	EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
-	EGIT_SUBMODULES=( '*' )
-else
-	inherit pypi
-
-	# Upstream is often behind with doc updates
-	#DOC_PV=${PV}
-	DOC_PV=1.11.0
-
-	SRC_URI+="
-		doc? (
-			https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
-		)"
-
-	if [[ ${PV} != *rc* ]] ; then
-		KEYWORDS="amd64 arm arm64 ~loong ppc64 ~riscv ~sparc x86"
-	fi
-fi
-
-LICENSE="BSD LGPL-2"
-SLOT="0"
-IUSE="doc +fortran test-rust"
-
-# umfpack is technically optional but it's preferred to have it available.
-DEPEND="
-	>=dev-python/numpy-1.21.6:=[lapack,${PYTHON_USEDEP}]
-	sci-libs/arpack:=
-	sci-libs/umfpack
-	virtual/cblas
-	>=virtual/lapack-3.8
-"
-RDEPEND="
-	${DEPEND}
-	dev-python/pillow[${PYTHON_USEDEP}]
-"
-BDEPEND="
-	dev-lang/swig
-	>=dev-python/cython-0.29.35[${PYTHON_USEDEP}]
-	>=dev-python/meson-python-0.12.1[${PYTHON_USEDEP}]
-	>=dev-python/pybind11-2.10.4[${PYTHON_USEDEP}]
-	>=dev-build/meson-1.1.0
-	!kernel_Darwin? ( dev-util/patchelf )
-	virtual/pkgconfig
-	doc? ( app-arch/unzip )
-	fortran? ( dev-python/pythran[${PYTHON_USEDEP}] )
-	test? (
-		dev-python/pytest-xdist[${PYTHON_USEDEP}]
-	)
-	test-rust? (
-		dev-python/pooch[${PYTHON_USEDEP}]
-	)
-"
-
-distutils_enable_tests pytest
-
-src_unpack() {
-	default
-
-	if use doc; then
-		unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
-	fi
-}
-
-python_configure_all() {
-	# https://github.com/scipy/scipy/pull/19857
-	# Fixed in 1.13.0
-	filter-lto
-	DISTUTILS_ARGS=(
-		-Dblas=blas
-		-Dlapack=lapack
-		-Duse-pythran=$(usex fortran true false)
-	)
-}
-
-python_test() {
-	cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
-
-	local EPYTEST_DESELECT=(
-		# Network
-		scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
-		scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
-		scipy/datasets/tests/test_data.py::TestDatasets::test_face
-		scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
-
-		# Precision issue with diff. blas?
-		scipy/optimize/tests/test__basinhopping.py::Test_Metropolis::test_gh7799
-
-		# Crashes with assertion, not a regression
-		# https://github.com/scipy/scipy/issues/19321
-		scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object
-
-		# timeouts
-		scipy/sparse/linalg/tests/test_propack.py::test_examples
-		# hang or incredibly slow
-		scipy/optimize/tests/test_lsq_linear.py::TestBVLS::test_large_rank_deficient
-		scipy/optimize/tests/test_lsq_linear.py::TestTRF::test_large_rank_deficient
-	)
-	local EPYTEST_IGNORE=()
-
-	if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
-		EPYTEST_IGNORE+=(
-			scipy/datasets/tests/test_data.py
-		)
-	fi
-
-	case ${EPYTHON} in
-		pypy3)
-			EPYTEST_DESELECT+=(
-				# fd leaks in tests
-				# https://github.com/scipy/scipy/issues/19553
-				scipy/fft/_pocketfft/tests/test_real_transforms.py
-				# TODO
-				'scipy/special/tests/test_data.py::test_boost[<Data for expi: expinti_data_long_ipp-expinti_data_long>]'
-			)
-			;;
-	esac
-
-	epytest -n "$(makeopts_jobs)" --dist=worksteal scipy
-}
-
-python_install_all() {
-	use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
-
-	distutils-r1_python_install_all
-}

diff --git a/dev-python/scipy/scipy-1.11.4-r1.ebuild b/dev-python/scipy/scipy-1.11.4-r1.ebuild
deleted file mode 100644
index 57a88fe87cf2..000000000000
--- a/dev-python/scipy/scipy-1.11.4-r1.ebuild
+++ /dev/null
@@ -1,150 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-FORTRAN_NEEDED=fortran
-DISTUTILS_EXT=1
-DISTUTILS_USE_PEP517=meson-python
-PYTHON_COMPAT=( pypy3 python3_{10..12} )
-PYTHON_REQ_USE="threads(+)"
-
-inherit flag-o-matic fortran-2 distutils-r1 multiprocessing
-
-DESCRIPTION="Scientific algorithms library for Python"
-HOMEPAGE="
-	https://scipy.org/
-	https://github.com/scipy/scipy/
-	https://pypi.org/project/scipy/
-"
-
-if [[ ${PV} == *9999* ]] ; then
-	inherit git-r3
-
-	# Need submodules, so git for now.
-	EGIT_REPO_URI="https://github.com/scipy/scipy"
-	EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
-	EGIT_SUBMODULES=( '*' )
-else
-	inherit pypi
-
-	# Upstream is often behind with doc updates
-	#DOC_PV=${PV}
-	DOC_PV=1.11.2
-
-	SRC_URI+="
-		doc? (
-			https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
-		)"
-
-	if [[ ${PV} != *rc* ]] ; then
-		KEYWORDS="amd64 arm arm64 ~loong ~ppc ppc64 ~riscv ~s390 ~sparc ~x86"
-	fi
-fi
-
-LICENSE="BSD LGPL-2"
-SLOT="0"
-IUSE="doc +fortran test-rust"
-
-# umfpack is technically optional but it's preferred to have it available.
-DEPEND="
-	>=dev-python/numpy-1.21.6:=[lapack,${PYTHON_USEDEP}]
-	sci-libs/arpack:=
-	sci-libs/umfpack
-	virtual/cblas
-	>=virtual/lapack-3.8
-"
-RDEPEND="
-	${DEPEND}
-	dev-python/pillow[${PYTHON_USEDEP}]
-"
-BDEPEND="
-	dev-lang/swig
-	>=dev-python/cython-0.29.35[${PYTHON_USEDEP}]
-	>=dev-python/meson-python-0.12.1[${PYTHON_USEDEP}]
-	>=dev-python/pybind11-2.10.4[${PYTHON_USEDEP}]
-	>=dev-build/meson-1.1.0
-	!kernel_Darwin? ( dev-util/patchelf )
-	virtual/pkgconfig
-	doc? ( app-arch/unzip )
-	fortran? ( dev-python/pythran[${PYTHON_USEDEP}] )
-	test? (
-		dev-python/pytest-xdist[${PYTHON_USEDEP}]
-	)
-	test-rust? (
-		dev-python/pooch[${PYTHON_USEDEP}]
-	)
-"
-
-distutils_enable_tests pytest
-
-src_unpack() {
-	default
-
-	if use doc; then
-		unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
-	fi
-}
-
-python_configure_all() {
-	# https://github.com/scipy/scipy/pull/19857
-	# Fixed in 1.13.0
-	filter-lto
-	DISTUTILS_ARGS=(
-		-Dblas=blas
-		-Dlapack=lapack
-		-Duse-pythran=$(usex fortran true false)
-	)
-}
-
-python_test() {
-	cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
-
-	local EPYTEST_DESELECT=(
-		# Network
-		scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
-		scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
-		scipy/datasets/tests/test_data.py::TestDatasets::test_face
-		scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
-
-		# Precision issue with diff. blas?
-		scipy/optimize/tests/test__basinhopping.py::Test_Metropolis::test_gh7799
-
-		# Crashes with assertion, not a regression
-		# https://github.com/scipy/scipy/issues/19321
-		scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object
-
-		# timeouts
-		scipy/sparse/linalg/tests/test_propack.py::test_examples
-		# hang or incredibly slow
-		scipy/optimize/tests/test_lsq_linear.py::TestBVLS::test_large_rank_deficient
-		scipy/optimize/tests/test_lsq_linear.py::TestTRF::test_large_rank_deficient
-	)
-	local EPYTEST_IGNORE=()
-
-	if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
-		EPYTEST_IGNORE+=(
-			scipy/datasets/tests/test_data.py
-		)
-	fi
-
-	case ${EPYTHON} in
-		pypy3)
-			EPYTEST_DESELECT+=(
-				# fd leaks in tests
-				# https://github.com/scipy/scipy/issues/19553
-				scipy/fft/_pocketfft/tests/test_real_transforms.py
-				# TODO
-				'scipy/special/tests/test_data.py::test_boost[<Data for expi: expinti_data_long_ipp-expinti_data_long>]'
-			)
-			;;
-	esac
-
-	epytest -n "$(makeopts_jobs)" --dist=worksteal scipy
-}
-
-python_install_all() {
-	use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
-
-	distutils-r1_python_install_all
-}

diff --git a/dev-python/scipy/scipy-1.12.0-r1.ebuild b/dev-python/scipy/scipy-1.12.0-r1.ebuild
deleted file mode 100644
index d3dff15df08b..000000000000
--- a/dev-python/scipy/scipy-1.12.0-r1.ebuild
+++ /dev/null
@@ -1,151 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-FORTRAN_NEEDED=fortran
-DISTUTILS_EXT=1
-DISTUTILS_USE_PEP517=meson-python
-PYTHON_COMPAT=( pypy3 python3_{10..12} )
-PYTHON_REQ_USE="threads(+)"
-
-inherit flag-o-matic fortran-2 distutils-r1
-
-DESCRIPTION="Scientific algorithms library for Python"
-HOMEPAGE="
-	https://scipy.org/
-	https://github.com/scipy/scipy/
-	https://pypi.org/project/scipy/
-"
-
-if [[ ${PV} == *9999* ]] ; then
-	inherit git-r3
-
-	# Need submodules, so git for now.
-	EGIT_REPO_URI="https://github.com/scipy/scipy"
-	EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
-	EGIT_SUBMODULES=( '*' )
-else
-	inherit pypi
-
-	# Upstream is often behind with doc updates
-	#DOC_PV=${PV}
-	DOC_PV=1.11.2
-
-	SRC_URI+="
-		doc? (
-			https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
-		)"
-
-	if [[ ${PV} != *rc* ]] ; then
-		KEYWORDS="amd64 arm arm64 ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86"
-	fi
-fi
-
-LICENSE="BSD LGPL-2"
-SLOT="0"
-IUSE="doc +fortran test-rust"
-
-# umfpack is technically optional but it's preferred to have it available.
-DEPEND="
-	>=dev-python/numpy-1.21.6:=[lapack,${PYTHON_USEDEP}]
-	sci-libs/arpack:=
-	sci-libs/umfpack
-	virtual/cblas
-	>=virtual/lapack-3.8
-"
-RDEPEND="
-	${DEPEND}
-	dev-python/pillow[${PYTHON_USEDEP}]
-"
-BDEPEND="
-	dev-lang/swig
-	>=dev-python/cython-0.29.35[${PYTHON_USEDEP}]
-	>=dev-python/meson-python-0.12.1[${PYTHON_USEDEP}]
-	>=dev-python/pybind11-2.10.4[${PYTHON_USEDEP}]
-	>=dev-build/meson-1.1.0
-	!kernel_Darwin? ( dev-util/patchelf )
-	virtual/pkgconfig
-	doc? ( app-arch/unzip )
-	fortran? ( dev-python/pythran[${PYTHON_USEDEP}] )
-	test? (
-		dev-python/hypothesis[${PYTHON_USEDEP}]
-	)
-	test-rust? (
-		dev-python/pooch[${PYTHON_USEDEP}]
-	)
-"
-
-EPYTEST_XDIST=1
-distutils_enable_tests pytest
-
-src_unpack() {
-	default
-
-	if use doc; then
-		unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
-	fi
-}
-
-python_configure_all() {
-	# https://github.com/scipy/scipy/pull/19857
-	# Fixed in 1.13.0
-	filter-lto
-	DISTUTILS_ARGS=(
-		-Dblas=blas
-		-Dlapack=lapack
-		-Duse-pythran=$(usex fortran true false)
-	)
-}
-
-python_test() {
-	cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
-
-	local EPYTEST_DESELECT=(
-		# Network
-		scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
-		scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
-		scipy/datasets/tests/test_data.py::TestDatasets::test_face
-		scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
-
-		# Precision issue with diff. blas?
-		scipy/optimize/tests/test__basinhopping.py::Test_Metropolis::test_gh7799
-
-		# Crashes with assertion, not a regression
-		# https://github.com/scipy/scipy/issues/19321
-		scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object
-
-		# timeouts
-		scipy/sparse/linalg/tests/test_propack.py::test_examples
-		# hang or incredibly slow
-		scipy/optimize/tests/test_lsq_linear.py::TestBVLS::test_large_rank_deficient
-		scipy/optimize/tests/test_lsq_linear.py::TestTRF::test_large_rank_deficient
-	)
-	local EPYTEST_IGNORE=()
-
-	if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
-		EPYTEST_IGNORE+=(
-			scipy/datasets/tests/test_data.py
-		)
-	fi
-
-	case ${EPYTHON} in
-		pypy3)
-			EPYTEST_DESELECT+=(
-				# fd leaks in tests
-				# https://github.com/scipy/scipy/issues/19553
-				scipy/fft/_pocketfft/tests/test_real_transforms.py
-				# TODO
-				'scipy/special/tests/test_data.py::test_boost[<Data for expi: expinti_data_long_ipp-expinti_data_long>]'
-			)
-			;;
-	esac
-
-	epytest scipy
-}
-
-python_install_all() {
-	use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
-
-	distutils-r1_python_install_all
-}

diff --git a/dev-python/scipy/scipy-1.13.0.ebuild b/dev-python/scipy/scipy-1.13.0.ebuild
deleted file mode 100644
index f361a013c952..000000000000
--- a/dev-python/scipy/scipy-1.13.0.ebuild
+++ /dev/null
@@ -1,166 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-FORTRAN_NEEDED=fortran
-DISTUTILS_EXT=1
-DISTUTILS_USE_PEP517=meson-python
-PYTHON_COMPAT=( pypy3 python3_{10..12} )
-PYTHON_REQ_USE="threads(+)"
-
-inherit fortran-2 distutils-r1
-
-DESCRIPTION="Scientific algorithms library for Python"
-HOMEPAGE="
-	https://scipy.org/
-	https://github.com/scipy/scipy/
-	https://pypi.org/project/scipy/
-"
-
-if [[ ${PV} == *9999* ]] ; then
-	inherit git-r3
-
-	# Need submodules, so git for now.
-	EGIT_REPO_URI="https://github.com/scipy/scipy"
-	EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
-	EGIT_SUBMODULES=( '*' )
-else
-	inherit pypi
-
-	# Upstream is often behind with doc updates
-	DOC_PV=${PV}
-
-	SRC_URI+="
-		doc? (
-			https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
-		)"
-
-	if [[ ${PV} != *rc* ]] ; then
-		KEYWORDS="~amd64 ~arm arm64 ~loong ~ppc ppc64 ~riscv ~s390 ~sparc ~x86"
-	fi
-fi
-
-LICENSE="BSD LGPL-2"
-SLOT="0"
-IUSE="doc +fortran test-rust"
-
-# umfpack is technically optional but it's preferred to have it available.
-DEPEND="
-	>=dev-python/numpy-1.22.4:=[lapack,${PYTHON_USEDEP}]
-	sci-libs/arpack:=
-	sci-libs/umfpack
-	virtual/cblas
-	>=virtual/lapack-3.8
-"
-RDEPEND="
-	${DEPEND}
-	dev-python/pillow[${PYTHON_USEDEP}]
-"
-BDEPEND="
-	dev-lang/swig
-	>=dev-python/cython-3.0.8[${PYTHON_USEDEP}]
-	>=dev-python/meson-python-0.15.0[${PYTHON_USEDEP}]
-	>=dev-python/pybind11-2.12.0[${PYTHON_USEDEP}]
-	>=dev-build/meson-1.1.0
-	!kernel_Darwin? ( dev-util/patchelf )
-	virtual/pkgconfig
-	doc? ( app-arch/unzip )
-	fortran? ( >=dev-python/pythran-0.14.0[${PYTHON_USEDEP}] )
-	test? (
-		>=dev-python/hypothesis-6.30[${PYTHON_USEDEP}]
-	)
-	test-rust? (
-		dev-python/pooch[${PYTHON_USEDEP}]
-	)
-"
-
-EPYTEST_XDIST=1
-distutils_enable_tests pytest
-
-src_unpack() {
-	default
-
-	if use doc; then
-		unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
-	fi
-}
-
-python_configure_all() {
-	DISTUTILS_ARGS=(
-		-Dblas=blas
-		-Dlapack=lapack
-		-Duse-pythran=$(usex fortran true false)
-	)
-
-	# hide real scipy, to prevent pythran crashing when scipy is being
-	# rebuilt for new numpy ABI
-	# https://github.com/serge-sans-paille/pythran/issues/2194
-	cat >> "${T}/scipy.py" <<-EOF || die
-		raise ImportError("hide real scipy")
-	EOF
-}
-
-python_compile() {
-	local -x PYTHONPATH="${T}${PYTHONPATH+:${PYTHONPATH}}"
-	distutils-r1_python_compile
-}
-
-python_test() {
-	cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
-
-	local EPYTEST_DESELECT=(
-		# Network
-		scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
-		scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
-		scipy/datasets/tests/test_data.py::TestDatasets::test_face
-		scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
-
-		# Precision issue with diff. blas?
-		scipy/optimize/tests/test__basinhopping.py::Test_Metropolis::test_gh7799
-
-		# Crashes with assertion, not a regression
-		# https://github.com/scipy/scipy/issues/19321
-		scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object
-
-		# timeouts
-		scipy/sparse/linalg/tests/test_propack.py::test_examples
-		# hang or incredibly slow
-		scipy/optimize/tests/test_lsq_linear.py::TestBVLS::test_large_rank_deficient
-		scipy/optimize/tests/test_lsq_linear.py::TestTRF::test_large_rank_deficient
-
-		# TODO
-		scipy/optimize/tests/test_minimize_constrained.py::TestTrustRegionConstr::test_list_of_problems
-	)
-	local EPYTEST_IGNORE=()
-
-	if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
-		EPYTEST_IGNORE+=(
-			scipy/datasets/tests/test_data.py
-		)
-	fi
-
-	case ${EPYTHON} in
-		pypy3)
-			EPYTEST_DESELECT+=(
-				# fd leaks in tests
-				# https://github.com/scipy/scipy/issues/19553
-				scipy/fft/_pocketfft/tests/test_real_transforms.py
-				# TODO
-				'scipy/special/tests/test_data.py::test_boost[<Data for expi: expinti_data_long_ipp-expinti_data_long>]'
-				# missing dict.__ror__
-				# https://github.com/pypy/pypy/issues/4934
-				'scipy/sparse/tests/test_dok.py::test_dunder_ror[dok_matrix]'
-			)
-			;;
-	esac
-
-	local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
-	epytest scipy
-}
-
-python_install_all() {
-	use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
-
-	distutils-r1_python_install_all
-}

diff --git a/dev-python/scipy/scipy-1.13.1.ebuild b/dev-python/scipy/scipy-1.13.1.ebuild
deleted file mode 100644
index 5200331cde1f..000000000000
--- a/dev-python/scipy/scipy-1.13.1.ebuild
+++ /dev/null
@@ -1,171 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-FORTRAN_NEEDED=fortran
-DISTUTILS_EXT=1
-DISTUTILS_USE_PEP517=meson-python
-PYTHON_COMPAT=( pypy3 python3_{10..12} )
-PYTHON_REQ_USE="threads(+)"
-
-inherit fortran-2 distutils-r1
-
-DESCRIPTION="Scientific algorithms library for Python"
-HOMEPAGE="
-	https://scipy.org/
-	https://github.com/scipy/scipy/
-	https://pypi.org/project/scipy/
-"
-
-if [[ ${PV} == *9999* ]] ; then
-	inherit git-r3
-
-	# Need submodules, so git for now.
-	EGIT_REPO_URI="https://github.com/scipy/scipy"
-	EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
-	EGIT_SUBMODULES=( '*' )
-else
-	inherit pypi
-
-	# Upstream is often behind with doc updates
-	DOC_PV=${PV}
-
-	SRC_URI+="
-		doc? (
-			https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
-		)"
-
-	if [[ ${PV} != *rc* ]] ; then
-		KEYWORDS="amd64 arm arm64 ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc x86"
-	fi
-fi
-
-LICENSE="BSD LGPL-2"
-SLOT="0"
-IUSE="doc +fortran test-rust"
-
-# umfpack is technically optional but it's preferred to have it available.
-DEPEND="
-	>=dev-python/numpy-1.22.4:=[lapack,${PYTHON_USEDEP}]
-	sci-libs/arpack:=
-	sci-libs/umfpack
-	virtual/cblas
-	>=virtual/lapack-3.8
-"
-RDEPEND="
-	${DEPEND}
-	dev-python/pillow[${PYTHON_USEDEP}]
-"
-BDEPEND="
-	dev-lang/swig
-	>=dev-python/cython-3.0.8[${PYTHON_USEDEP}]
-	>=dev-python/meson-python-0.15.0[${PYTHON_USEDEP}]
-	>=dev-python/pybind11-2.12.0[${PYTHON_USEDEP}]
-	>=dev-build/meson-1.1.0
-	!kernel_Darwin? ( dev-util/patchelf )
-	virtual/pkgconfig
-	doc? ( app-arch/unzip )
-	fortran? ( >=dev-python/pythran-0.14.0[${PYTHON_USEDEP}] )
-	test? (
-		>=dev-python/hypothesis-6.30[${PYTHON_USEDEP}]
-	)
-	test-rust? (
-		dev-python/pooch[${PYTHON_USEDEP}]
-	)
-"
-
-EPYTEST_XDIST=1
-distutils_enable_tests pytest
-
-PATCHES=(
-	# https://github.com/scipy/scipy/pull/20914
-	"${FILESDIR}/${P}-test.patch"
-)
-
-src_unpack() {
-	default
-
-	if use doc; then
-		unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
-	fi
-}
-
-python_configure_all() {
-	DISTUTILS_ARGS=(
-		-Dblas=blas
-		-Dlapack=lapack
-		-Duse-pythran=$(usex fortran true false)
-	)
-
-	# hide real scipy, to prevent pythran crashing when scipy is being
-	# rebuilt for new numpy ABI
-	# https://github.com/serge-sans-paille/pythran/issues/2194
-	cat >> "${T}/scipy.py" <<-EOF || die
-		raise ImportError("hide real scipy")
-	EOF
-}
-
-python_compile() {
-	local -x PYTHONPATH="${T}${PYTHONPATH+:${PYTHONPATH}}"
-	distutils-r1_python_compile
-}
-
-python_test() {
-	cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
-
-	local EPYTEST_DESELECT=(
-		# Network
-		scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
-		scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
-		scipy/datasets/tests/test_data.py::TestDatasets::test_face
-		scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
-
-		# Precision issue with diff. blas?
-		scipy/optimize/tests/test__basinhopping.py::Test_Metropolis::test_gh7799
-
-		# Crashes with assertion, not a regression
-		# https://github.com/scipy/scipy/issues/19321
-		scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object
-
-		# timeouts
-		scipy/sparse/linalg/tests/test_propack.py::test_examples
-		# hang or incredibly slow
-		scipy/optimize/tests/test_lsq_linear.py::TestBVLS::test_large_rank_deficient
-		scipy/optimize/tests/test_lsq_linear.py::TestTRF::test_large_rank_deficient
-
-		# TODO
-		scipy/optimize/tests/test_minimize_constrained.py::TestTrustRegionConstr::test_list_of_problems
-	)
-	local EPYTEST_IGNORE=()
-
-	if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
-		EPYTEST_IGNORE+=(
-			scipy/datasets/tests/test_data.py
-		)
-	fi
-
-	case ${EPYTHON} in
-		pypy3)
-			EPYTEST_DESELECT+=(
-				# fd leaks in tests
-				# https://github.com/scipy/scipy/issues/19553
-				scipy/fft/_pocketfft/tests/test_real_transforms.py
-				# TODO
-				'scipy/special/tests/test_data.py::test_boost[<Data for expi: expinti_data_long_ipp-expinti_data_long>]'
-				# missing dict.__ror__
-				# https://github.com/pypy/pypy/issues/4934
-				'scipy/sparse/tests/test_dok.py::test_dunder_ror[dok_matrix]'
-			)
-			;;
-	esac
-
-	local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
-	epytest scipy
-}
-
-python_install_all() {
-	use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
-
-	distutils-r1_python_install_all
-}


             reply	other threads:[~2024-07-13 19:25 UTC|newest]

Thread overview: 7+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2024-07-13 19:25 Michał Górny [this message]
  -- strict thread matches above, loose matches on Subject: below --
2024-09-22  2:23 [gentoo-commits] repo/gentoo:master commit in: dev-python/scipy/files/, dev-python/scipy/ Michał Górny
2024-08-13 20:41 Michał Górny
2024-07-05 19:04 Michał Górny
2023-06-27 10:56 Sam James
2022-06-24  3:58 Michał Górny
2021-11-05  5:56 Sam James

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