[gentoo-commits] proj/sci:master commit in: sci-biology/multiqc/

[gentoo-commits] proj/sci:master commit in: sci-biology/multiqc/

[Andrew Ammerlaan]

commit:     5f2709bb2dee51ca95791f91c71aee2f7711d593
Author:     Michael Schubert <mschu.dev <AT> gmail <DOT> com>
AuthorDate: Mon Jan 29 21:51:25 2024 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue Jan 30 14:01:32 2024 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=5f2709bb

sci-biology/multiqc: add ebuild

Signed-off-by: Michael Schubert <mschu.dev <AT> gmail.com>
Closes: https://github.com/gentoo/sci/pull/1223
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 sci-biology/multiqc/metadata.xml        | 12 ++++++++++
 sci-biology/multiqc/multiqc-1.19.ebuild | 40 +++++++++++++++++++++++++++++++++
 2 files changed, 52 insertions(+)

diff --git a/sci-biology/multiqc/metadata.xml b/sci-biology/multiqc/metadata.xml
new file mode 100644
index 000000000..09bd2b6e6
--- /dev/null
+++ b/sci-biology/multiqc/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<email>mschu.dev@gmail.com</email>
+		<name>Michael Schubert</name>
+	</maintainer>
+	<upstream>
+		<remote-id type="github">ewels/MultiQC</remote-id>
+		<remote-id type="pypi">multiqc</remote-id>
+	</upstream>
+</pkgmetadata>

diff --git a/sci-biology/multiqc/multiqc-1.19.ebuild b/sci-biology/multiqc/multiqc-1.19.ebuild
new file mode 100644
index 000000000..187f06c22
--- /dev/null
+++ b/sci-biology/multiqc/multiqc-1.19.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=setuptools
+PYTHON_COMPAT=( python3_{10..11} )
+
+inherit pypi distutils-r1
+
+DESCRIPTION="Aggregate bioinformatics results across many samples into a single report"
+HOMEPAGE="https://multiqc.info/"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~amd64-linux"
+
+RDEPEND="dev-python/matplotlib[${PYTHON_USEDEP}]
+	dev-python/networkx[${PYTHON_USEDEP}]
+	dev-python/numpy[${PYTHON_USEDEP}]
+	dev-python/click[${PYTHON_USEDEP}]
+	dev-python/coloredlogs[${PYTHON_USEDEP}]
+	dev-python/future[${PYTHON_USEDEP}]
+	dev-python/jinja[${PYTHON_USEDEP}]
+	dev-python/lzstring[${PYTHON_USEDEP}]
+	dev-python/markdown[${PYTHON_USEDEP}]
+	dev-python/packaging[${PYTHON_USEDEP}]
+	dev-python/pyyaml[${PYTHON_USEDEP}]
+	dev-python/requests[${PYTHON_USEDEP}]
+	dev-python/rich[${PYTHON_USEDEP}]
+	dev-python/rich-click[${PYTHON_USEDEP}]
+	dev-python/simplejson[${PYTHON_USEDEP}]
+	dev-python/spectra[${PYTHON_USEDEP}]
+	dev-python/importlib-metadata[$PYTHON_USEDEP]
+	dev-python/humanize[$PYTHON_USEDEP]
+	dev-python/pyaml-env[$PYTHON_USEDEP]"
+
+# pypi tarball does not include tests
+RESTRICT="test"
+#distutils_enable_tests pytest

[gentoo-commits] proj/sci:master commit in: sci-biology/multiqc/

[Andrew Ammerlaan]

commit:     0ea7c54fa7b6fb141a59c0653e88113290982bea
Author:     Michael Schubert <mschu.dev <AT> gmail <DOT> com>
AuthorDate: Mon Jul  8 19:57:09 2024 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Thu Jul 11 12:17:05 2024 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=0ea7c54f

sci-biology/multiqc: version bump 1.23

Signed-off-by: Michael Schubert <mschu.dev <AT> gmail.com>
Closes: https://github.com/gentoo/sci/pull/1281
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 sci-biology/multiqc/{multiqc-1.22.2.ebuild => multiqc-1.23.ebuild} | 0
 1 file changed, 0 insertions(+), 0 deletions(-)

diff --git a/sci-biology/multiqc/multiqc-1.22.2.ebuild b/sci-biology/multiqc/multiqc-1.23.ebuild
similarity index 100%
rename from sci-biology/multiqc/multiqc-1.22.2.ebuild
rename to sci-biology/multiqc/multiqc-1.23.ebuild