From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (2048 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 5BDBB1581D3 for ; Thu, 30 May 2024 21:55:35 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 3F30FE2A74; Thu, 30 May 2024 21:55:34 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 2706EE2A74 for ; Thu, 30 May 2024 21:55:34 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 3E166341214 for ; Thu, 30 May 2024 21:55:33 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 90A72E21 for ; Thu, 30 May 2024 21:55:31 +0000 (UTC) From: "Horea Christian" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Horea Christian" Message-ID: <1717106124.be6977739d20a779f291c66eefb9cc896ff2e4e0.chymera@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/afni/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/afni/afni-24.0.04-r1.ebuild sci-biology/afni/afni-24.0.08-r1.ebuild sci-biology/afni/afni-24.0.08-r2.ebuild X-VCS-Directories: sci-biology/afni/ X-VCS-Committer: chymera X-VCS-Committer-Name: Horea Christian X-VCS-Revision: be6977739d20a779f291c66eefb9cc896ff2e4e0 X-VCS-Branch: master Date: Thu, 30 May 2024 21:55:31 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 7ce5e2b1-61bb-4973-b908-0061db1afc34 X-Archives-Hash: 68665b57e71d7956bd5c06540ac29a2f commit: be6977739d20a779f291c66eefb9cc896ff2e4e0 Author: Horea Christian chymera eu> AuthorDate: Thu May 30 21:55:24 2024 +0000 Commit: Horea Christian gmail com> CommitDate: Thu May 30 21:55:24 2024 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=be697773 sci-biology/afni: drop 24.0.04-r1, 24.0.08-r1, 24.0.08-r2 Signed-off-by: Horea Christian chymera.eu> sci-biology/afni/afni-24.0.04-r1.ebuild | 110 ---------------------------- sci-biology/afni/afni-24.0.08-r1.ebuild | 114 ----------------------------- sci-biology/afni/afni-24.0.08-r2.ebuild | 124 -------------------------------- 3 files changed, 348 deletions(-) diff --git a/sci-biology/afni/afni-24.0.04-r1.ebuild b/sci-biology/afni/afni-24.0.04-r1.ebuild deleted file mode 100644 index c5adfb6d8..000000000 --- a/sci-biology/afni/afni-24.0.04-r1.ebuild +++ /dev/null @@ -1,110 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{10..13} ) - -DISTUTILS_USE_PEP517=setuptools -inherit cmake distutils-r1 toolchain-funcs - -GTS_HASH="962155a01f5a1b87bd64e3e3d880b4dbc2347ac7" -NIFTI_HASH="da476fd27f46098f37f5c9c4c1baee01e559572c" -GIFTI_HASH="d3e873d8539d9b469daf7db04093da1d7e73d4f7" - -DESCRIPTION="Analysis of Functional Neuroimages by NIMH" -HOMEPAGE="https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/" -SRC_URI=" - https://github.com/afni/afni/archive/refs/tags/AFNI_${PV}.tar.gz -> ${P}.gh.tar.gz - https://github.com/NIFTI-Imaging/nifti_clib/archive/${NIFTI_HASH}.tar.gz -> nifti-${NIFTI_HASH}.tar.gz - https://github.com/NIFTI-Imaging/gifti_clib/archive/${GIFTI_HASH}.tar.gz -> gifti-${GIFTI_HASH}.tar.gz - " - -S="${WORKDIR}/afni-AFNI_${PV}" - -LICENSE="GPL-3+" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="test whirlgif" -RESTRICT="!test? ( test )" - -RDEPEND=" - dev-libs/glib:2 - dev-libs/libf2c - dev-libs/expat - dev-build/ninja - media-libs/freeglut - media-libs/glu - media-libs/netpbm - media-libs/qhull - media-video/mpeg-tools - sci-libs/gsl - sci-libs/gts - sys-devel/llvm:* - sys-libs/libomp - virtual/jpeg-compat:62 - x11-libs/libGLw - x11-libs/libXft - x11-libs/libXi - x11-libs/libXmu - x11-libs/libXpm - x11-libs/libXt - x11-libs/motif[-static-libs] - " -DEPEND=" - ${RDEPEND} - app-shells/tcsh - " - -src_prepare() { - tar xf "${DISTDIR}/nifti-${NIFTI_HASH}.tar.gz" || die - tar xf "${DISTDIR}/gifti-${GIFTI_HASH}.tar.gz" || die - cmake_src_prepare - default - } - -src_configure() { - if use !whirlgif; then - eapply "${FILESDIR}/${P}-whirlgif.patch" - fi - export CFLAGS="-pthread ${CFLAGS}" - export GIT_REPO_VERSION=3.0.1.1 - local mycmakeargs=( - -DLIBDIR=/usr/$(get_libdir) - -DNIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir) - -DGIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir) - -DGIFTI_INSTALL_LIB_DIR=/usr/$(get_libdir) - -DAFNI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir) - -DCMAKE_INSTALL_LIBDIR=/usr/$(get_libdir) - -DCOMP_COREBINARIES=ON - -DUSE_SYSTEM_NIFTI=OFF - -DUSE_SYSTEM_GIFTI=OFF - -DUSE_SYSTEM_XMHTML=OFF - -DUSE_SYSTEM_GTS=ON - -DFETCHCONTENT_SOURCE_DIR_NIFTI_CLIB="${WORKDIR}/nifti_clib-${NIFTI_HASH}" - -DFETCHCONTENT_SOURCE_DIR_GIFTI_CLIB="${WORKDIR}/gifti_clib-${GIFTI_HASH}" - -DCOMP_GUI=ON - -DCOMP_PLUGINS=ON - -DUSE_OMP=ON - -DCOMP_PYTHON=OFF - -DUSE_SYSTEM_F2C=ON - ) - tc-export CC - cmake_src_configure -} - -src_compile() { - cmake_src_compile - pushd src/python_scripts - distutils-r1_src_compile - popd -} - -src_install() { - cmake_src_install - pushd src/python_scripts - distutils-r1_src_install - popd - cd "${D}" - rm usr/bin/mpeg_encode -} diff --git a/sci-biology/afni/afni-24.0.08-r1.ebuild b/sci-biology/afni/afni-24.0.08-r1.ebuild deleted file mode 100644 index 21ecf81a1..000000000 --- a/sci-biology/afni/afni-24.0.08-r1.ebuild +++ /dev/null @@ -1,114 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{10..13} ) - -DISTUTILS_USE_PEP517=setuptools -inherit cmake distutils-r1 toolchain-funcs - -GTS_HASH="962155a01f5a1b87bd64e3e3d880b4dbc2347ac7" -NIFTI_HASH="da476fd27f46098f37f5c9c4c1baee01e559572c" -GIFTI_HASH="d3e873d8539d9b469daf7db04093da1d7e73d4f7" - -DESCRIPTION="Analysis of Functional Neuroimages by NIMH" -HOMEPAGE="https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/" -SRC_URI=" - https://github.com/afni/afni/archive/refs/tags/AFNI_${PV}.tar.gz -> ${P}.gh.tar.gz - https://github.com/NIFTI-Imaging/nifti_clib/archive/${NIFTI_HASH}.tar.gz -> nifti-${NIFTI_HASH}.tar.gz - https://github.com/NIFTI-Imaging/gifti_clib/archive/${GIFTI_HASH}.tar.gz -> gifti-${GIFTI_HASH}.tar.gz - " - -S="${WORKDIR}/afni-AFNI_${PV}" - -LICENSE="GPL-3+" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="test whirlgif" -RESTRICT="!test? ( test )" - -RDEPEND=" - dev-libs/glib:2 - dev-libs/libf2c - dev-libs/expat - dev-build/ninja - media-libs/freeglut - media-libs/glu - media-libs/netpbm - media-libs/qhull - media-video/mpeg-tools - sci-libs/gsl - sci-libs/gts - sys-devel/llvm:* - sys-libs/libomp - virtual/jpeg-compat:62 - x11-libs/libGLw - x11-libs/libXft - x11-libs/libXi - x11-libs/libXmu - x11-libs/libXpm - x11-libs/libXt - x11-libs/motif[-static-libs] - " -DEPEND=" - ${RDEPEND} - app-shells/tcsh - " -# Prospectively: -#Update jpeg-compat to virtual/jpeg:0 -# look for xmhtlm - - #tar xf "${DISTDIR}/${GTS_HASH}.tar.gz" || die -src_prepare() { - tar xf "${DISTDIR}/nifti-${NIFTI_HASH}.tar.gz" || die - tar xf "${DISTDIR}/gifti-${GIFTI_HASH}.tar.gz" || die - cmake_src_prepare - default - } - -src_configure() { - if use !whirlgif; then - eapply "${FILESDIR}/${PN}-24.0.04-whirlgif.patch" - fi - export CFLAGS="-pthread ${CFLAGS}" - export GIT_REPO_VERSION=3.0.1.1 - local mycmakeargs=( - -DLIBDIR=/usr/$(get_libdir) - -DNIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir) - -DGIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir) - -DGIFTI_INSTALL_LIB_DIR=/usr/$(get_libdir) - -DAFNI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir) - -DCMAKE_INSTALL_LIBDIR=/usr/$(get_libdir) - -DCOMP_COREBINARIES=ON - -DUSE_SYSTEM_NIFTI=OFF - -DUSE_SYSTEM_GIFTI=OFF - -DUSE_SYSTEM_XMHTML=OFF - -DUSE_SYSTEM_GTS=ON - -DFETCHCONTENT_SOURCE_DIR_NIFTI_CLIB="${WORKDIR}/nifti_clib-${NIFTI_HASH}" - -DFETCHCONTENT_SOURCE_DIR_GIFTI_CLIB="${WORKDIR}/gifti_clib-${GIFTI_HASH}" - -DCOMP_GUI=ON - -DCOMP_PLUGINS=ON - -DUSE_OMP=ON - -DCOMP_PYTHON=OFF - -DUSE_SYSTEM_F2C=ON - ) - tc-export CC - cmake_src_configure -} - -src_compile() { - cmake_src_compile - pushd src/python_scripts - distutils-r1_src_compile - popd -} - -src_install() { - cmake_src_install - pushd src/python_scripts - distutils-r1_src_install - popd - cd "${D}" - rm usr/bin/mpeg_encode -} diff --git a/sci-biology/afni/afni-24.0.08-r2.ebuild b/sci-biology/afni/afni-24.0.08-r2.ebuild deleted file mode 100644 index 270100c0b..000000000 --- a/sci-biology/afni/afni-24.0.08-r2.ebuild +++ /dev/null @@ -1,124 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{10..13} ) - -DISTUTILS_USE_PEP517=setuptools -inherit cmake distutils-r1 toolchain-funcs - -GTS_HASH="962155a01f5a1b87bd64e3e3d880b4dbc2347ac7" -NIFTI_HASH="da476fd27f46098f37f5c9c4c1baee01e559572c" -GIFTI_HASH="d3e873d8539d9b469daf7db04093da1d7e73d4f7" - -DESCRIPTION="Analysis of Functional Neuroimages by NIMH" -HOMEPAGE="https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/" -SRC_URI=" - https://github.com/afni/afni/archive/refs/tags/AFNI_${PV}.tar.gz -> ${P}.gh.tar.gz - https://github.com/NIFTI-Imaging/nifti_clib/archive/${NIFTI_HASH}.tar.gz -> nifti-${NIFTI_HASH}.tar.gz - https://github.com/NIFTI-Imaging/gifti_clib/archive/${GIFTI_HASH}.tar.gz -> gifti-${GIFTI_HASH}.tar.gz - " - -S="${WORKDIR}/afni-AFNI_${PV}" - -LICENSE="GPL-3+" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="test whirlgif" -RESTRICT="!test? ( test )" - -RDEPEND=" - dev-build/ninja - dev-libs/expat - dev-libs/glib:2 - dev-libs/libf2c - media-libs/freeglut - media-libs/glu - media-libs/netpbm - media-libs/qhull - media-video/mpeg-tools - sci-biology/afni-datasets - sci-libs/gsl - sci-libs/gts - sys-devel/llvm:* - sys-libs/libomp - virtual/jpeg-compat:62 - x11-libs/libGLw - x11-libs/libXft - x11-libs/libXi - x11-libs/libXmu - x11-libs/libXpm - x11-libs/libXt - x11-libs/motif[-static-libs] - " -DEPEND=" - ${RDEPEND} - app-shells/tcsh - " -# Prospectively: -#Update jpeg-compat to virtual/jpeg:0 -# look for xmhtlm - - #tar xf "${DISTDIR}/${GTS_HASH}.tar.gz" || die -src_prepare() { - tar xf "${DISTDIR}/nifti-${NIFTI_HASH}.tar.gz" || die - tar xf "${DISTDIR}/gifti-${GIFTI_HASH}.tar.gz" || die - cmake_src_prepare - default - } - -src_configure() { - if use !whirlgif; then - eapply "${FILESDIR}/${PN}-24.0.04-whirlgif.patch" - fi - export CFLAGS="-pthread ${CFLAGS}" - export GIT_REPO_VERSION=3.0.1.1 - local mycmakeargs=( - -DLIBDIR=/usr/$(get_libdir) - -DNIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir) - -DGIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir) - -DGIFTI_INSTALL_LIB_DIR=/usr/$(get_libdir) - -DAFNI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir) - -DCMAKE_INSTALL_LIBDIR=/usr/$(get_libdir) - -DCOMP_COREBINARIES=ON - -DUSE_SYSTEM_NIFTI=OFF - -DUSE_SYSTEM_GIFTI=OFF - -DUSE_SYSTEM_XMHTML=OFF - -DUSE_SYSTEM_GTS=ON - -DFETCHCONTENT_SOURCE_DIR_NIFTI_CLIB="${WORKDIR}/nifti_clib-${NIFTI_HASH}" - -DFETCHCONTENT_SOURCE_DIR_GIFTI_CLIB="${WORKDIR}/gifti_clib-${GIFTI_HASH}" - -DCOMP_GUI=ON - -DCOMP_PLUGINS=ON - -DUSE_OMP=ON - -DCOMP_PYTHON=OFF - -DUSE_SYSTEM_F2C=ON - ) - tc-export CC - cmake_src_configure -} - -src_compile() { - cmake_src_compile - pushd src/python_scripts - distutils-r1_src_compile - popd -} - -src_install() { - cmake_src_install - pushd src/python_scripts - distutils-r1_src_install - popd - cd "${D}" - rm usr/bin/mpeg_encode - doenvd "${FILESDIR}/97afni" -} - -pkg_postinst() { - echo - einfo "Please run the following commands if you" - einfo "intend to use afni binaries from an existing shell:" - einfo "source /etc/profile" - echo -}