[gentoo-commits] repo/gentoo:master commit in: sci-biology/bcftools/

["David Seifert" <soap@gentoo.org>]

commit:     1af696627e09436ead88952c730660ff081c60ba
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Fri May 24 08:59:45 2024 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Fri May 24 08:59:45 2024 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1af69662

sci-biology/bcftools: drop 1.17

Signed-off-by: David Seifert <soap <AT> gentoo.org>

 sci-biology/bcftools/Manifest             |  1 -
 sci-biology/bcftools/bcftools-1.17.ebuild | 42 -------------------------------
 2 files changed, 43 deletions(-)

diff --git a/sci-biology/bcftools/Manifest b/sci-biology/bcftools/Manifest
index 9cbcbdd02db5..3d2a9ade06aa 100644
--- a/sci-biology/bcftools/Manifest
+++ b/sci-biology/bcftools/Manifest
@@ -1,2 +1 @@
-DIST bcftools-1.17.tar.bz2 7538043 BLAKE2B 82f65d53ebea0527ff000329f158ebdb1d603e04841a096cf8ca0434e7a5694ab43da7959ee10e9cb29328bf82301c03200e1203578a74e2e1118856b2641502 SHA512 39ae44a682e626a5261900e9412170a269e460b559d6607db697e6a12b1e512ffb3bdeb3486413e19b8adca26a8ccbb2bd4af24459decb74592c54473d2c6a68
 DIST bcftools-1.19.tar.bz2 7906216 BLAKE2B 43e7ac0fc6ffcf837607fb2fbbd58a72106a89b018d1fd4b24db0eb854a9bf0efd0c7762fae84bf7f51226346777be646d134159ea48e3eb3df71799e9353a3f SHA512 a203c65fa58fca8fb5276e73ed8fc23dfd841e9dc05881304a8b91327d60ac3b5fcf5a55a1f1bab5647037f037ff30f2881791052f6e29cf38c646cbc947a746

diff --git a/sci-biology/bcftools/bcftools-1.17.ebuild b/sci-biology/bcftools/bcftools-1.17.ebuild
deleted file mode 100644
index 6adee705bb46..000000000000
--- a/sci-biology/bcftools/bcftools-1.17.ebuild
+++ /dev/null
@@ -1,42 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{9..11} )
-
-inherit python-single-r1
-
-DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files"
-HOMEPAGE="http://www.htslib.org"
-SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
-	dev-lang/perl
-	$(python_gen_cond_dep 'dev-python/matplotlib[${PYTHON_USEDEP}]')
-	=sci-libs/htslib-$(ver_cut 1-2)*:=
-	sys-libs/zlib
-	${PYTHON_DEPS}"
-DEPEND="${RDEPEND}"
-BDEPEND="${PYTHON_DEPS}"
-
-src_prepare() {
-	default
-
-	python_fix_shebang misc/{gff2gff,guess-ploidy,plot-roh}.py
-
-	# remove bundled htslib
-	rm -r htslib-* || die
-}
-
-src_configure() {
-	econf \
-		--disable-bcftools-plugins \
-		--disable-libgsl \
-		--with-htslib=system
-}