* [gentoo-commits] repo/gentoo:master commit in: sci-biology/newick-utils/
@ 2016-01-21 8:40 David Seifert
0 siblings, 0 replies; 6+ messages in thread
From: David Seifert @ 2016-01-21 8:40 UTC (permalink / raw
To: gentoo-commits
commit: ac414834093c3bfb137d7155a869650ea32d71ca
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu Jan 21 08:39:45 2016 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu Jan 21 08:40:22 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ac414834
sci-biology/newick-utils: Version bump to 1.6
Gentoo-Bug: 521644
* Remove use of 'einstall'
* EAPI=6
Package-Manager: portage-2.2.26
sci-biology/newick-utils/Manifest | 1 +
sci-biology/newick-utils/newick-utils-1.6.ebuild | 21 +++++++++++++++++++++
2 files changed, 22 insertions(+)
diff --git a/sci-biology/newick-utils/Manifest b/sci-biology/newick-utils/Manifest
index a33f2a5..3be7a9f 100644
--- a/sci-biology/newick-utils/Manifest
+++ b/sci-biology/newick-utils/Manifest
@@ -1,2 +1,3 @@
DIST newick-utils-1.3.0.tar.gz 6872730 SHA256 2c4d364a6b74d484b795681a08f648e1c89c373e6aa29c2b84bf690530bc54ee SHA512 29a1e9c8bbb77b6e6a7b5e8a76d00120a31dd2082822ad8918a497945ae8534d7112b5c70924d4a86341a48e17e55099396f70b470e6f0dad8fb555c4886c922 WHIRLPOOL 5198a81dc72a5561f5d1ad9f4c41a436bd0987945eeb768de5cb8dc7a12d317819da1458d7c1e120114da1e7bf6f63b79b0c091baa927a6f67b19ca1a70e93d1
DIST newick-utils-1.5.0.tar.gz 7400423 SHA256 b5508ff31228c8d9fc9fb2e9b70aa24192248998c4e315dd82135323c05e1f67 SHA512 a6446d4d31f1b5a1978fdb57d4d4809fedf37bba78b48c26ce0745a3710cb364173094b6ee3088dc8cb4ffff7e70eea239e1ff215d42d7ab96101f71c1381573 WHIRLPOOL bc1c8faac7aba644c330dee614563ddc75f739d59bdcfa6416f1b6c069f500c2814b4450d309df176714fb8da5cb56fc69fb8e5de6c5e10e1504e24b43535e23
+DIST newick-utils-1.6.tar.gz 7518535 SHA256 2c142a2806f6e1598585c8be5afba6d448c572ad21c142e70d6fd61877fee798 SHA512 1e327f9a32b5b0df097bcb63f933f9073a85f0499a2a48be122f4affca52ae1541e1a6e0cca7420447aa8fe8d10d6e76e8d89933b2f84e023d6c87b50808d96c WHIRLPOOL 3d7477a9ffcd2b410d9acf476e2850944dbe361f5c26d7dc853a20d4ec76d70032ab03b5929afa252bda7c24e790243174be8ec35115ba8e78f63eaa332d82d1
diff --git a/sci-biology/newick-utils/newick-utils-1.6.ebuild b/sci-biology/newick-utils/newick-utils-1.6.ebuild
new file mode 100644
index 0000000..0d96b08
--- /dev/null
+++ b/sci-biology/newick-utils/newick-utils-1.6.ebuild
@@ -0,0 +1,21 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+DESCRIPTION="Tools for processing phylogenetic trees"
+HOMEPAGE="http://cegg.unige.ch/newick_utils"
+SRC_URI="http://cegg.unige.ch/pub/${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+DEPEND=""
+RDEPEND="!dev-games/libnw"
+
+src_test() {
+ emake -C tests check-TESTS
+}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/newick-utils/
@ 2017-02-06 21:27 David Seifert
0 siblings, 0 replies; 6+ messages in thread
From: David Seifert @ 2017-02-06 21:27 UTC (permalink / raw
To: gentoo-commits
commit: ab42ba35ed14c18f1cbadc1424d56b391c0c3e3f
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Mon Feb 6 20:48:02 2017 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Mon Feb 6 21:26:53 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ab42ba35
sci-biology/newick-utils: Remove old
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Closes: https://github.com/gentoo/gentoo/pull/3856
sci-biology/newick-utils/Manifest | 2 --
sci-biology/newick-utils/newick-utils-1.3.0.ebuild | 25 ----------------------
sci-biology/newick-utils/newick-utils-1.5.0.ebuild | 25 ----------------------
3 files changed, 52 deletions(-)
diff --git a/sci-biology/newick-utils/Manifest b/sci-biology/newick-utils/Manifest
index 3be7a9f..ca4d0cf 100644
--- a/sci-biology/newick-utils/Manifest
+++ b/sci-biology/newick-utils/Manifest
@@ -1,3 +1 @@
-DIST newick-utils-1.3.0.tar.gz 6872730 SHA256 2c4d364a6b74d484b795681a08f648e1c89c373e6aa29c2b84bf690530bc54ee SHA512 29a1e9c8bbb77b6e6a7b5e8a76d00120a31dd2082822ad8918a497945ae8534d7112b5c70924d4a86341a48e17e55099396f70b470e6f0dad8fb555c4886c922 WHIRLPOOL 5198a81dc72a5561f5d1ad9f4c41a436bd0987945eeb768de5cb8dc7a12d317819da1458d7c1e120114da1e7bf6f63b79b0c091baa927a6f67b19ca1a70e93d1
-DIST newick-utils-1.5.0.tar.gz 7400423 SHA256 b5508ff31228c8d9fc9fb2e9b70aa24192248998c4e315dd82135323c05e1f67 SHA512 a6446d4d31f1b5a1978fdb57d4d4809fedf37bba78b48c26ce0745a3710cb364173094b6ee3088dc8cb4ffff7e70eea239e1ff215d42d7ab96101f71c1381573 WHIRLPOOL bc1c8faac7aba644c330dee614563ddc75f739d59bdcfa6416f1b6c069f500c2814b4450d309df176714fb8da5cb56fc69fb8e5de6c5e10e1504e24b43535e23
DIST newick-utils-1.6.tar.gz 7518535 SHA256 2c142a2806f6e1598585c8be5afba6d448c572ad21c142e70d6fd61877fee798 SHA512 1e327f9a32b5b0df097bcb63f933f9073a85f0499a2a48be122f4affca52ae1541e1a6e0cca7420447aa8fe8d10d6e76e8d89933b2f84e023d6c87b50808d96c WHIRLPOOL 3d7477a9ffcd2b410d9acf476e2850944dbe361f5c26d7dc853a20d4ec76d70032ab03b5929afa252bda7c24e790243174be8ec35115ba8e78f63eaa332d82d1
diff --git a/sci-biology/newick-utils/newick-utils-1.3.0.ebuild b/sci-biology/newick-utils/newick-utils-1.3.0.ebuild
deleted file mode 100644
index 94c51c2..00000000
--- a/sci-biology/newick-utils/newick-utils-1.3.0.ebuild
+++ /dev/null
@@ -1,25 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="2"
-
-DESCRIPTION="Tools for processing phylogenetic trees (re-root, subtrees, trimming, pruning, condensing, drawing)"
-HOMEPAGE="http://cegg.unige.ch/newick_utils"
-SRC_URI="http://cegg.unige.ch/pub/${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-IUSE=""
-KEYWORDS="amd64 x86"
-
-DEPEND=""
-RDEPEND="!dev-games/libnw"
-
-src_install() {
- einstall || die
-}
-
-src_test() {
- emake -C tests check-TESTS || die
-}
diff --git a/sci-biology/newick-utils/newick-utils-1.5.0.ebuild b/sci-biology/newick-utils/newick-utils-1.5.0.ebuild
deleted file mode 100644
index 6bf8d10..00000000
--- a/sci-biology/newick-utils/newick-utils-1.5.0.ebuild
+++ /dev/null
@@ -1,25 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="2"
-
-DESCRIPTION="Tools for processing phylogenetic trees (re-root, subtrees, trimming, pruning, condensing, drawing)"
-HOMEPAGE="http://cegg.unige.ch/newick_utils"
-SRC_URI="http://cegg.unige.ch/pub/${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-DEPEND=""
-RDEPEND="!dev-games/libnw"
-
-src_install() {
- einstall || die
-}
-
-src_test() {
- emake -C tests check-TESTS || die
-}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/newick-utils/
@ 2022-07-30 8:38 Sam James
0 siblings, 0 replies; 6+ messages in thread
From: Sam James @ 2022-07-30 8:38 UTC (permalink / raw
To: gentoo-commits
commit: c103bb432cd299c91b9f052cb84c64512e5c1a3a
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Sat Jul 30 08:37:51 2022 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Sat Jul 30 08:37:51 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c103bb43
sci-biology/newick-utils: add github upstream metadata
Signed-off-by: Sam James <sam <AT> gentoo.org>
sci-biology/newick-utils/metadata.xml | 3 +++
1 file changed, 3 insertions(+)
diff --git a/sci-biology/newick-utils/metadata.xml b/sci-biology/newick-utils/metadata.xml
index 5f547d71de93..9ba134125d0c 100644
--- a/sci-biology/newick-utils/metadata.xml
+++ b/sci-biology/newick-utils/metadata.xml
@@ -8,4 +8,7 @@
<use>
<flag name="xml">Uses <pkg>dev-libs/libxml2</pkg> to handle ornaments</flag>
</use>
+ <upstream>
+ <remote-id type="github">tjunier/newick_utils</remote-id>
+ </upstream>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/newick-utils/
@ 2024-04-11 16:29 Sam James
0 siblings, 0 replies; 6+ messages in thread
From: Sam James @ 2024-04-11 16:29 UTC (permalink / raw
To: gentoo-commits
commit: 9344d5beff1e1802dd14c2c40de973263aecce95
Author: Eli Schwartz <eschwartz93 <AT> gmail <DOT> com>
AuthorDate: Thu Apr 11 03:09:20 2024 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Thu Apr 11 16:28:08 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9344d5be
sci-biology/newick-utils: mark as LTO-unsafe
Closes: https://bugs.gentoo.org/862279
Signed-off-by: Eli Schwartz <eschwartz93 <AT> gmail.com>
Signed-off-by: Sam James <sam <AT> gentoo.org>
sci-biology/newick-utils/newick-utils-1.6-r1.ebuild | 9 +++++++--
1 file changed, 7 insertions(+), 2 deletions(-)
diff --git a/sci-biology/newick-utils/newick-utils-1.6-r1.ebuild b/sci-biology/newick-utils/newick-utils-1.6-r1.ebuild
index 3dcb438832a2..49ec5510de2b 100644
--- a/sci-biology/newick-utils/newick-utils-1.6-r1.ebuild
+++ b/sci-biology/newick-utils/newick-utils-1.6-r1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2024 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
-inherit autotools
+inherit autotools flag-o-matic
DESCRIPTION="Tools for processing phylogenetic trees"
HOMEPAGE="http://cegg.unige.ch/newick_utils"
@@ -31,6 +31,11 @@ src_prepare() {
}
src_configure() {
+ # -Werror=lto-type-mismatch
+ # https://bugs.gentoo.org/862279
+ # https://github.com/tjunier/newick_utils/issues/34
+ filter-lto
+
econf \
--disable-static \
--without-guile \
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/newick-utils/
@ 2024-04-11 16:29 Sam James
0 siblings, 0 replies; 6+ messages in thread
From: Sam James @ 2024-04-11 16:29 UTC (permalink / raw
To: gentoo-commits
commit: f3d0fd26ba50dd3df08387f1eede41f78427ec8f
Author: Eli Schwartz <eschwartz93 <AT> gmail <DOT> com>
AuthorDate: Thu Apr 11 03:12:36 2024 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Thu Apr 11 16:28:08 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f3d0fd26
sci-biology/newick-utils: update HOMEPAGE, SRC_URI to archive.org
The whole thing is a redirect now to a website with no real info, that
points to a github repo without even any tags.
Signed-off-by: Eli Schwartz <eschwartz93 <AT> gmail.com>
Signed-off-by: Sam James <sam <AT> gentoo.org>
sci-biology/newick-utils/newick-utils-1.6-r1.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/newick-utils/newick-utils-1.6-r1.ebuild b/sci-biology/newick-utils/newick-utils-1.6-r1.ebuild
index 49ec5510de2b..bc8f7563f37e 100644
--- a/sci-biology/newick-utils/newick-utils-1.6-r1.ebuild
+++ b/sci-biology/newick-utils/newick-utils-1.6-r1.ebuild
@@ -6,8 +6,8 @@ EAPI=7
inherit autotools flag-o-matic
DESCRIPTION="Tools for processing phylogenetic trees"
-HOMEPAGE="http://cegg.unige.ch/newick_utils"
-SRC_URI="http://cegg.unige.ch/pub/${P}.tar.gz"
+HOMEPAGE="https://web.archive.org/web/20120206012743/http://cegg.unige.ch/newick_utils"
+SRC_URI="https://web.archive.org/web/20120126210029if_/http://cegg.unige.ch/pub/${P}.tar.gz"
LICENSE="BSD"
SLOT="0"
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/newick-utils/
@ 2024-04-11 16:30 Sam James
0 siblings, 0 replies; 6+ messages in thread
From: Sam James @ 2024-04-11 16:30 UTC (permalink / raw
To: gentoo-commits
commit: 02ca13e7809e1e15e3fd8529b3f6b11cad1b035b
Author: Eli Schwartz <eschwartz93 <AT> gmail <DOT> com>
AuthorDate: Thu Apr 11 03:17:52 2024 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Thu Apr 11 16:28:09 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=02ca13e7
sci-biology/newick-utils: update EAPI 7 -> 8
Signed-off-by: Eli Schwartz <eschwartz93 <AT> gmail.com>
Signed-off-by: Sam James <sam <AT> gentoo.org>
.../{newick-utils-1.6-r1.ebuild => newick-utils-1.6-r2.ebuild} | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/newick-utils/newick-utils-1.6-r1.ebuild b/sci-biology/newick-utils/newick-utils-1.6-r2.ebuild
similarity index 99%
rename from sci-biology/newick-utils/newick-utils-1.6-r1.ebuild
rename to sci-biology/newick-utils/newick-utils-1.6-r2.ebuild
index bc8f7563f37e..5d5cfa360ccb 100644
--- a/sci-biology/newick-utils/newick-utils-1.6-r1.ebuild
+++ b/sci-biology/newick-utils/newick-utils-1.6-r2.ebuild
@@ -1,7 +1,7 @@
# Copyright 1999-2024 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=7
+EAPI=8
inherit autotools flag-o-matic
^ permalink raw reply related [flat|nested] 6+ messages in thread
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