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* [gentoo-commits] repo/gentoo:master commit in: dev-python/scikit-image/
@ 2024-02-26 14:25 Michał Górny
  0 siblings, 0 replies; 13+ messages in thread
From: Michał Górny @ 2024-02-26 14:25 UTC (permalink / raw
  To: gentoo-commits

commit:     c4f61533f59c14db34733766871fad88c503ec48
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Mon Feb 26 14:12:44 2024 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Mon Feb 26 14:12:44 2024 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c4f61533

dev-python/scikit-image: Remove old

Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 dev-python/scikit-image/Manifest                   |  1 -
 .../scikit-image/scikit-image-0.19.3-r1.ebuild     | 59 ----------------------
 2 files changed, 60 deletions(-)

diff --git a/dev-python/scikit-image/Manifest b/dev-python/scikit-image/Manifest
index 8b42da1c8888..2fb1346b2e37 100644
--- a/dev-python/scikit-image/Manifest
+++ b/dev-python/scikit-image/Manifest
@@ -1,2 +1 @@
-DIST scikit-image-0.19.3.tar.gz 22232287 BLAKE2B 855584be0e69ac6e0dc7a17a68a1bca6843b471073e63d098b4933bc301eab5246d4cd2b444960de7fcd37012b66f7ba8cd6030ac485a7ab3aa1d36501aef0c7 SHA512 cda1699200e19155da13e313eb129771b7bb895913e552b959a3374267fe4f73c33d5e6e2fa2d49326903c901925797e46b9f05342a78c5332df1c266d37471a
 DIST scikit_image-0.22.0.tar.gz 22685018 BLAKE2B 7d0a65f75f5a58211e21501d6cc6a638f1d36e9a2198a3ad9ff2f230890496c41d5e6cdaed02bbaa62f26aa57fd24fc993656cbdfc2c9c9750147d0f325e56f1 SHA512 4b8c097cd5465f57b1c0879363fe3bdc0941decf2d1f8a881f13f2b7f3207c425f3a0cdcb4be0eed7b33d3ac2f3f8b1835d1cfa69cd3fa2ff5e0be11385fef48

diff --git a/dev-python/scikit-image/scikit-image-0.19.3-r1.ebuild b/dev-python/scikit-image/scikit-image-0.19.3-r1.ebuild
deleted file mode 100644
index 3b0060a33375..000000000000
--- a/dev-python/scikit-image/scikit-image-0.19.3-r1.ebuild
+++ /dev/null
@@ -1,59 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_USE_PEP517=setuptools
-PYPI_NO_NORMALIZE=1
-PYTHON_COMPAT=( python3_{10..11} )
-
-inherit distutils-r1 optfeature pypi
-
-DESCRIPTION="Image processing routines for SciPy"
-HOMEPAGE="
-	https://scikit-image.org/
-	https://github.com/scikit-image/scikit-image/
-	https://pypi.org/project/scikit-image/
-"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~x86"
-RESTRICT="test"
-
-RDEPEND="
-	dev-python/imageio[${PYTHON_USEDEP}]
-	dev-python/matplotlib[${PYTHON_USEDEP}]
-	dev-python/networkx[${PYTHON_USEDEP}]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-python/pillow[${PYTHON_USEDEP}]
-	dev-python/pywavelets[${PYTHON_USEDEP}]
-	dev-python/scipy[sparse(+),${PYTHON_USEDEP}]
-	dev-python/tifffile[${PYTHON_USEDEP}]
-"
-DEPEND="${RDEPEND}"
-BDEPEND="
-	dev-python/cython[${PYTHON_USEDEP}]
-	dev-python/packaging[${PYTHON_USEDEP}]
-"
-
-DOCS=( CONTRIBUTORS.txt RELEASE.txt )
-
-distutils_enable_tests pytest
-# There is a programmable error in your configuration file:
-#distutils_enable_sphinx doc/source dev-python/numpydoc dev-python/myst-parser
-
-python_test() {
-	# This needs to be run in the install dir
-	cd "${WORKDIR}/${P}-${EPYTHON//./_}/install/usr/lib/${EPYTHON}/site-packages/skimage" || die
-	distutils-r1_python_test
-}
-
-pkg_postinst() {
-	optfeature "FITS io capability" dev-python/astropy
-	optfeature "GTK" dev-python/pygtk
-	optfeature "Parallel computation" dev-python/dask
-	optfeature "io plugin providing most standard formats" dev-python/imread
-	# not in portage yet
-	#optfeature "io plugin providing a wide variety of formats, including specialized formats using in medical imaging." dev-python/simpleitk
-}


^ permalink raw reply related	[flat|nested] 13+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-python/scikit-image/
@ 2024-04-04 18:09 Michał Górny
  0 siblings, 0 replies; 13+ messages in thread
From: Michał Górny @ 2024-04-04 18:09 UTC (permalink / raw
  To: gentoo-commits

commit:     0110ec020dbdb46c859e584609ab056fcafa10c6
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Thu Apr  4 14:49:28 2024 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Thu Apr  4 18:08:37 2024 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0110ec02

dev-python/scikit-image: Bump to 0.23.0_rc2

Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 dev-python/scikit-image/Manifest                   |  2 +
 .../scikit-image/scikit-image-0.23.0_rc2.ebuild    | 97 ++++++++++++++++++++++
 2 files changed, 99 insertions(+)

diff --git a/dev-python/scikit-image/Manifest b/dev-python/scikit-image/Manifest
index 2fb1346b2e37..ecdbdaba9105 100644
--- a/dev-python/scikit-image/Manifest
+++ b/dev-python/scikit-image/Manifest
@@ -1 +1,3 @@
+DIST scikit-image-data-15735b54e85c02427f07c71e6456723495034805.tar.bz2 143900901 BLAKE2B c1352e76337250fe1a9d6e07f08b6c9b1e0aed922ab8e0a3a4a1ea175f593b3375522e59550d30a22d392c34fef26d638c007c2af3d991887e02e7c68e56ebbb SHA512 d113dd258b35be710d841f9900cfbfe7103d1190b042489de88dd504b56277edac9a98fed5517e57725c5292fe26528267a06ff313bf6500b669d872c4481146
 DIST scikit_image-0.22.0.tar.gz 22685018 BLAKE2B 7d0a65f75f5a58211e21501d6cc6a638f1d36e9a2198a3ad9ff2f230890496c41d5e6cdaed02bbaa62f26aa57fd24fc993656cbdfc2c9c9750147d0f325e56f1 SHA512 4b8c097cd5465f57b1c0879363fe3bdc0941decf2d1f8a881f13f2b7f3207c425f3a0cdcb4be0eed7b33d3ac2f3f8b1835d1cfa69cd3fa2ff5e0be11385fef48
+DIST scikit_image-0.23.0rc2.tar.gz 22677632 BLAKE2B b663065650e25a33ffec80ddd05df622bc62b1c1d3d0a831488d4dd23291b4f125458ae335782762b1d4dc1efa8cbedd5fcd7e6bbe62003967209e4ca4179bca SHA512 aa5f27d571ea49276aba8443a691b30a576d52145a17f13b8ea080a2abf0ed01c57fe50324c05e72bb4662a9ddbb480be94be6784ac3220ed6853b12d94ae06b

diff --git a/dev-python/scikit-image/scikit-image-0.23.0_rc2.ebuild b/dev-python/scikit-image/scikit-image-0.23.0_rc2.ebuild
new file mode 100644
index 000000000000..c5a106b9ecb8
--- /dev/null
+++ b/dev-python/scikit-image/scikit-image-0.23.0_rc2.ebuild
@@ -0,0 +1,97 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=meson-python
+DISTUTILS_EXT=1
+PYTHON_COMPAT=( python3_{10..12} )
+
+inherit distutils-r1 optfeature pypi
+
+TEST_DATA_COMMIT=15735b54e85c02427f07c71e6456723495034805
+DESCRIPTION="Image processing routines for SciPy"
+HOMEPAGE="
+	https://scikit-image.org/
+	https://github.com/scikit-image/scikit-image/
+	https://pypi.org/project/scikit-image/
+"
+SRC_URI+="
+	test? (
+		https://gitlab.com/scikit-image/data/-/archive/${TEST_DATA_COMMIT}/scikit-image-data-${TEST_DATA_COMMIT}.tar.bz2
+	)
+"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~x86"
+
+RDEPEND="
+	>=dev-python/imageio-2.33[${PYTHON_USEDEP}]
+	>=dev-python/lazy_loader-0.3[${PYTHON_USEDEP}]
+	>=dev-python/networkx-2.8[${PYTHON_USEDEP}]
+	>=dev-python/numpy-1.23[${PYTHON_USEDEP}]
+	>=dev-python/pillow-9.1[${PYTHON_USEDEP}]
+	>=dev-python/scipy-1.9[sparse(+),${PYTHON_USEDEP}]
+	>=dev-python/tifffile-2022.8.12[${PYTHON_USEDEP}]
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	>=dev-python/cython-3.0.4[${PYTHON_USEDEP}]
+	dev-python/packaging[${PYTHON_USEDEP}]
+	test? (
+		dev-python/pytest-localserver[${PYTHON_USEDEP}]
+	)
+"
+
+DOCS=( CONTRIBUTORS.txt RELEASE.txt )
+
+# xdist does not work with this test suite
+distutils_enable_tests pytest
+# There is a programmable error in your configuration file:
+#distutils_enable_sphinx doc/source dev-python/numpydoc dev-python/myst-parser
+
+src_test() {
+	# for some reason, upstream refetches data that's already in the tarball
+	# sigh
+	mkdir -p "${HOME}/.cache/scikit-image" || die
+	mv skimage "${HOME}/.cache/scikit-image/${PV/_/}" || die
+
+	# This is a true horror, sigh
+	local cache_dir=${HOME}/.cache/scikit-image/${PV/_/}/data
+	pushd "${WORKDIR}/data-${TEST_DATA_COMMIT}" >/dev/null || die
+	cp Tests_besides_Equalize_Otsu/add18_entropy/rank_filters_tests_3d.npz \
+		Tests_besides_Equalize_Otsu/gray_morph_output.npz \
+		brain.tiff cells3d.tif eagle.png \
+		"${cache_dir}/" || die
+	cp Normal_Epidermis_and_Dermis_with_Intradermal_Nevus_10x.JPG "${cache_dir}"/skin.jpg || die
+	cp pivchallenge/B/B001_1.tif "${cache_dir}"/pivchallenge-B-B001_1.tif || die
+	cp pivchallenge/B/B001_2.tif "${cache_dir}"/pivchallenge-B-B001_2.tif || die
+	cp kidney-tissue-fluorescence.tif "${cache_dir}"/kidney.tif || die
+	cp lily-of-the-valley-fluorescence.tif "${cache_dir}"/lily.tif || die
+	cp astronaut_rl.npy "${cache_dir}/../restoration/tests/" || die
+	popd > /dev/null || die
+
+	distutils-r1_src_test
+}
+
+python_test() {
+	local EPYTEST_DESELECT=(
+		# tests for downloading all data files, including these not needed
+		# by any actual tests
+		data/tests/test_data.py::test_download_all_with_pooch
+	)
+
+	local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
+	epytest --pyargs skimage -p localserver -o xfail_strict=False
+}
+
+pkg_postinst() {
+	optfeature "FITS io capability" dev-python/astropy
+	optfeature "GTK" dev-python/pygtk
+	optfeature "Parallel computation" dev-python/dask
+	optfeature "io plugin providing most standard formats" dev-python/imread
+	optfeature "plotting" dev-python/matplotlib
+	optfeature "wavelet transformations" dev-python/pywavelets
+	optfeature "io plugin providing a wide variety of formats, including specialized formats using in medical imaging." dev-python/simpleitk
+}


^ permalink raw reply related	[flat|nested] 13+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-python/scikit-image/
@ 2024-04-06 10:03 Sam James
  0 siblings, 0 replies; 13+ messages in thread
From: Sam James @ 2024-04-06 10:03 UTC (permalink / raw
  To: gentoo-commits

commit:     1ab400f5010077dd05dc16438746cf20075371fe
Author:     Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Sat Apr  6 10:03:01 2024 +0000
Commit:     Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Sat Apr  6 10:03:12 2024 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1ab400f5

dev-python/scikit-image: fix DependencyMoved

Closes: https://bugs.gentoo.org/928662
Signed-off-by: Sam James <sam <AT> gentoo.org>

 dev-python/scikit-image/scikit-image-0.22.0.ebuild     | 2 +-
 dev-python/scikit-image/scikit-image-0.23.0_rc2.ebuild | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/dev-python/scikit-image/scikit-image-0.22.0.ebuild b/dev-python/scikit-image/scikit-image-0.22.0.ebuild
index c9fa7b6e7d77..62ff8da8a3eb 100644
--- a/dev-python/scikit-image/scikit-image-0.22.0.ebuild
+++ b/dev-python/scikit-image/scikit-image-0.22.0.ebuild
@@ -24,7 +24,7 @@ RESTRICT="test"
 
 RDEPEND="
 	>=dev-python/imageio-2.27[${PYTHON_USEDEP}]
-	>=dev-python/lazy_loader-0.3[${PYTHON_USEDEP}]
+	>=dev-python/lazy-loader-0.3[${PYTHON_USEDEP}]
 	>=dev-python/networkx-2.8[${PYTHON_USEDEP}]
 	>=dev-python/numpy-1.22[${PYTHON_USEDEP}]
 	>=dev-python/pillow-9.0.1[${PYTHON_USEDEP}]

diff --git a/dev-python/scikit-image/scikit-image-0.23.0_rc2.ebuild b/dev-python/scikit-image/scikit-image-0.23.0_rc2.ebuild
index c5a106b9ecb8..a4314f655ffc 100644
--- a/dev-python/scikit-image/scikit-image-0.23.0_rc2.ebuild
+++ b/dev-python/scikit-image/scikit-image-0.23.0_rc2.ebuild
@@ -28,7 +28,7 @@ KEYWORDS="~amd64 ~arm64 ~x86"
 
 RDEPEND="
 	>=dev-python/imageio-2.33[${PYTHON_USEDEP}]
-	>=dev-python/lazy_loader-0.3[${PYTHON_USEDEP}]
+	>=dev-python/lazy-loader-0.3[${PYTHON_USEDEP}]
 	>=dev-python/networkx-2.8[${PYTHON_USEDEP}]
 	>=dev-python/numpy-1.23[${PYTHON_USEDEP}]
 	>=dev-python/pillow-9.1[${PYTHON_USEDEP}]


^ permalink raw reply related	[flat|nested] 13+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-python/scikit-image/
@ 2024-04-11  4:25 Michał Górny
  0 siblings, 0 replies; 13+ messages in thread
From: Michał Górny @ 2024-04-11  4:25 UTC (permalink / raw
  To: gentoo-commits

commit:     177fac774c00bde8524d9a0145bfcdd48a160710
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Thu Apr 11 03:15:55 2024 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Thu Apr 11 04:20:01 2024 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=177fac77

dev-python/scikit-image: Bump to 0.23.1

Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 dev-python/scikit-image/Manifest                   |  1 +
 dev-python/scikit-image/scikit-image-0.23.1.ebuild | 97 ++++++++++++++++++++++
 2 files changed, 98 insertions(+)

diff --git a/dev-python/scikit-image/Manifest b/dev-python/scikit-image/Manifest
index ecdbdaba9105..19374f7c05eb 100644
--- a/dev-python/scikit-image/Manifest
+++ b/dev-python/scikit-image/Manifest
@@ -1,3 +1,4 @@
 DIST scikit-image-data-15735b54e85c02427f07c71e6456723495034805.tar.bz2 143900901 BLAKE2B c1352e76337250fe1a9d6e07f08b6c9b1e0aed922ab8e0a3a4a1ea175f593b3375522e59550d30a22d392c34fef26d638c007c2af3d991887e02e7c68e56ebbb SHA512 d113dd258b35be710d841f9900cfbfe7103d1190b042489de88dd504b56277edac9a98fed5517e57725c5292fe26528267a06ff313bf6500b669d872c4481146
 DIST scikit_image-0.22.0.tar.gz 22685018 BLAKE2B 7d0a65f75f5a58211e21501d6cc6a638f1d36e9a2198a3ad9ff2f230890496c41d5e6cdaed02bbaa62f26aa57fd24fc993656cbdfc2c9c9750147d0f325e56f1 SHA512 4b8c097cd5465f57b1c0879363fe3bdc0941decf2d1f8a881f13f2b7f3207c425f3a0cdcb4be0eed7b33d3ac2f3f8b1835d1cfa69cd3fa2ff5e0be11385fef48
 DIST scikit_image-0.23.0rc2.tar.gz 22677632 BLAKE2B b663065650e25a33ffec80ddd05df622bc62b1c1d3d0a831488d4dd23291b4f125458ae335782762b1d4dc1efa8cbedd5fcd7e6bbe62003967209e4ca4179bca SHA512 aa5f27d571ea49276aba8443a691b30a576d52145a17f13b8ea080a2abf0ed01c57fe50324c05e72bb4662a9ddbb480be94be6784ac3220ed6853b12d94ae06b
+DIST scikit_image-0.23.1.tar.gz 22676819 BLAKE2B 2d02bab4f8d6217c842f428a6758d467393a73a05ac741a49cd27fa6ee48335cf8fed4cc104296388d0e23c61ac3603f72d7bab44986c0d3d4073da383f89726 SHA512 7450387c3adcac15148c3ae4f43fd7da97ceabf3522302b7f3ab4cd02e5a9ec2cd9623f29e4aec3bb47668a231e0900724804619bb91aaaf97283d29c34392e6

diff --git a/dev-python/scikit-image/scikit-image-0.23.1.ebuild b/dev-python/scikit-image/scikit-image-0.23.1.ebuild
new file mode 100644
index 000000000000..cb08918d42e9
--- /dev/null
+++ b/dev-python/scikit-image/scikit-image-0.23.1.ebuild
@@ -0,0 +1,97 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=meson-python
+DISTUTILS_EXT=1
+PYTHON_COMPAT=( python3_{10..12} )
+
+inherit distutils-r1 optfeature pypi
+
+TEST_DATA_COMMIT=15735b54e85c02427f07c71e6456723495034805
+DESCRIPTION="Image processing routines for SciPy"
+HOMEPAGE="
+	https://scikit-image.org/
+	https://github.com/scikit-image/scikit-image/
+	https://pypi.org/project/scikit-image/
+"
+SRC_URI+="
+	test? (
+		https://gitlab.com/scikit-image/data/-/archive/${TEST_DATA_COMMIT}/scikit-image-data-${TEST_DATA_COMMIT}.tar.bz2
+	)
+"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~x86"
+
+RDEPEND="
+	>=dev-python/imageio-2.33[${PYTHON_USEDEP}]
+	>=dev-python/lazy-loader-0.4[${PYTHON_USEDEP}]
+	>=dev-python/networkx-2.8[${PYTHON_USEDEP}]
+	>=dev-python/numpy-1.23[${PYTHON_USEDEP}]
+	>=dev-python/pillow-9.1[${PYTHON_USEDEP}]
+	>=dev-python/scipy-1.9[sparse(+),${PYTHON_USEDEP}]
+	>=dev-python/tifffile-2022.8.12[${PYTHON_USEDEP}]
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	>=dev-python/cython-3.0.4[${PYTHON_USEDEP}]
+	dev-python/packaging[${PYTHON_USEDEP}]
+	test? (
+		dev-python/pytest-localserver[${PYTHON_USEDEP}]
+	)
+"
+
+DOCS=( CONTRIBUTORS.txt RELEASE.txt )
+
+# xdist does not work with this test suite
+distutils_enable_tests pytest
+# There is a programmable error in your configuration file:
+#distutils_enable_sphinx doc/source dev-python/numpydoc dev-python/myst-parser
+
+src_test() {
+	# for some reason, upstream refetches data that's already in the tarball
+	# sigh
+	mkdir -p "${HOME}/.cache/scikit-image" || die
+	mv skimage "${HOME}/.cache/scikit-image/${PV/_/}" || die
+
+	# This is a true horror, sigh
+	local cache_dir=${HOME}/.cache/scikit-image/${PV/_/}/data
+	pushd "${WORKDIR}/data-${TEST_DATA_COMMIT}" >/dev/null || die
+	cp Tests_besides_Equalize_Otsu/add18_entropy/rank_filters_tests_3d.npz \
+		Tests_besides_Equalize_Otsu/gray_morph_output.npz \
+		brain.tiff cells3d.tif eagle.png \
+		"${cache_dir}/" || die
+	cp Normal_Epidermis_and_Dermis_with_Intradermal_Nevus_10x.JPG "${cache_dir}"/skin.jpg || die
+	cp pivchallenge/B/B001_1.tif "${cache_dir}"/pivchallenge-B-B001_1.tif || die
+	cp pivchallenge/B/B001_2.tif "${cache_dir}"/pivchallenge-B-B001_2.tif || die
+	cp kidney-tissue-fluorescence.tif "${cache_dir}"/kidney.tif || die
+	cp lily-of-the-valley-fluorescence.tif "${cache_dir}"/lily.tif || die
+	cp astronaut_rl.npy "${cache_dir}/../restoration/tests/" || die
+	popd > /dev/null || die
+
+	distutils-r1_src_test
+}
+
+python_test() {
+	local EPYTEST_DESELECT=(
+		# tests for downloading all data files, including these not needed
+		# by any actual tests
+		data/tests/test_data.py::test_download_all_with_pooch
+	)
+
+	local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
+	epytest --pyargs skimage -p localserver -o xfail_strict=False
+}
+
+pkg_postinst() {
+	optfeature "FITS io capability" dev-python/astropy
+	optfeature "GTK" dev-python/pygtk
+	optfeature "Parallel computation" dev-python/dask
+	optfeature "io plugin providing most standard formats" dev-python/imread
+	optfeature "plotting" dev-python/matplotlib
+	optfeature "wavelet transformations" dev-python/pywavelets
+	optfeature "io plugin providing a wide variety of formats, including specialized formats using in medical imaging." dev-python/simpleitk
+}


^ permalink raw reply related	[flat|nested] 13+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-python/scikit-image/
@ 2024-04-21  2:35 Michał Górny
  0 siblings, 0 replies; 13+ messages in thread
From: Michał Górny @ 2024-04-21  2:35 UTC (permalink / raw
  To: gentoo-commits

commit:     a9abe219c187740e455edc146f5c8697ed0e97c8
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Sun Apr 21 01:42:42 2024 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Sun Apr 21 02:35:03 2024 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a9abe219

dev-python/scikit-image: Bump to 0.23.2

Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 dev-python/scikit-image/Manifest                   |  1 +
 dev-python/scikit-image/scikit-image-0.23.2.ebuild | 97 ++++++++++++++++++++++
 2 files changed, 98 insertions(+)

diff --git a/dev-python/scikit-image/Manifest b/dev-python/scikit-image/Manifest
index 0c576d024015..4b094ea850c7 100644
--- a/dev-python/scikit-image/Manifest
+++ b/dev-python/scikit-image/Manifest
@@ -1,2 +1,3 @@
 DIST scikit-image-data-15735b54e85c02427f07c71e6456723495034805.tar.bz2 143900901 BLAKE2B c1352e76337250fe1a9d6e07f08b6c9b1e0aed922ab8e0a3a4a1ea175f593b3375522e59550d30a22d392c34fef26d638c007c2af3d991887e02e7c68e56ebbb SHA512 d113dd258b35be710d841f9900cfbfe7103d1190b042489de88dd504b56277edac9a98fed5517e57725c5292fe26528267a06ff313bf6500b669d872c4481146
 DIST scikit_image-0.23.1.tar.gz 22676819 BLAKE2B 2d02bab4f8d6217c842f428a6758d467393a73a05ac741a49cd27fa6ee48335cf8fed4cc104296388d0e23c61ac3603f72d7bab44986c0d3d4073da383f89726 SHA512 7450387c3adcac15148c3ae4f43fd7da97ceabf3522302b7f3ab4cd02e5a9ec2cd9623f29e4aec3bb47668a231e0900724804619bb91aaaf97283d29c34392e6
+DIST scikit_image-0.23.2.tar.gz 22678261 BLAKE2B 11c44676e9f7bce7735e85d8416175a55b1808807b99597d60495dc2b0c961a05a514b5ec456665a25d31cc09a20e430c331cfd5bc10afa01ca4070722aa03f8 SHA512 8abf6c2bb92a75524d254265822cdc49db636a482efe0d6459fc113f6898bc5c19ad58905a5020a9c4262f55993ad2e8d13810023c62d06c5ee9854666f5337f

diff --git a/dev-python/scikit-image/scikit-image-0.23.2.ebuild b/dev-python/scikit-image/scikit-image-0.23.2.ebuild
new file mode 100644
index 000000000000..cb08918d42e9
--- /dev/null
+++ b/dev-python/scikit-image/scikit-image-0.23.2.ebuild
@@ -0,0 +1,97 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=meson-python
+DISTUTILS_EXT=1
+PYTHON_COMPAT=( python3_{10..12} )
+
+inherit distutils-r1 optfeature pypi
+
+TEST_DATA_COMMIT=15735b54e85c02427f07c71e6456723495034805
+DESCRIPTION="Image processing routines for SciPy"
+HOMEPAGE="
+	https://scikit-image.org/
+	https://github.com/scikit-image/scikit-image/
+	https://pypi.org/project/scikit-image/
+"
+SRC_URI+="
+	test? (
+		https://gitlab.com/scikit-image/data/-/archive/${TEST_DATA_COMMIT}/scikit-image-data-${TEST_DATA_COMMIT}.tar.bz2
+	)
+"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~x86"
+
+RDEPEND="
+	>=dev-python/imageio-2.33[${PYTHON_USEDEP}]
+	>=dev-python/lazy-loader-0.4[${PYTHON_USEDEP}]
+	>=dev-python/networkx-2.8[${PYTHON_USEDEP}]
+	>=dev-python/numpy-1.23[${PYTHON_USEDEP}]
+	>=dev-python/pillow-9.1[${PYTHON_USEDEP}]
+	>=dev-python/scipy-1.9[sparse(+),${PYTHON_USEDEP}]
+	>=dev-python/tifffile-2022.8.12[${PYTHON_USEDEP}]
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	>=dev-python/cython-3.0.4[${PYTHON_USEDEP}]
+	dev-python/packaging[${PYTHON_USEDEP}]
+	test? (
+		dev-python/pytest-localserver[${PYTHON_USEDEP}]
+	)
+"
+
+DOCS=( CONTRIBUTORS.txt RELEASE.txt )
+
+# xdist does not work with this test suite
+distutils_enable_tests pytest
+# There is a programmable error in your configuration file:
+#distutils_enable_sphinx doc/source dev-python/numpydoc dev-python/myst-parser
+
+src_test() {
+	# for some reason, upstream refetches data that's already in the tarball
+	# sigh
+	mkdir -p "${HOME}/.cache/scikit-image" || die
+	mv skimage "${HOME}/.cache/scikit-image/${PV/_/}" || die
+
+	# This is a true horror, sigh
+	local cache_dir=${HOME}/.cache/scikit-image/${PV/_/}/data
+	pushd "${WORKDIR}/data-${TEST_DATA_COMMIT}" >/dev/null || die
+	cp Tests_besides_Equalize_Otsu/add18_entropy/rank_filters_tests_3d.npz \
+		Tests_besides_Equalize_Otsu/gray_morph_output.npz \
+		brain.tiff cells3d.tif eagle.png \
+		"${cache_dir}/" || die
+	cp Normal_Epidermis_and_Dermis_with_Intradermal_Nevus_10x.JPG "${cache_dir}"/skin.jpg || die
+	cp pivchallenge/B/B001_1.tif "${cache_dir}"/pivchallenge-B-B001_1.tif || die
+	cp pivchallenge/B/B001_2.tif "${cache_dir}"/pivchallenge-B-B001_2.tif || die
+	cp kidney-tissue-fluorescence.tif "${cache_dir}"/kidney.tif || die
+	cp lily-of-the-valley-fluorescence.tif "${cache_dir}"/lily.tif || die
+	cp astronaut_rl.npy "${cache_dir}/../restoration/tests/" || die
+	popd > /dev/null || die
+
+	distutils-r1_src_test
+}
+
+python_test() {
+	local EPYTEST_DESELECT=(
+		# tests for downloading all data files, including these not needed
+		# by any actual tests
+		data/tests/test_data.py::test_download_all_with_pooch
+	)
+
+	local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
+	epytest --pyargs skimage -p localserver -o xfail_strict=False
+}
+
+pkg_postinst() {
+	optfeature "FITS io capability" dev-python/astropy
+	optfeature "GTK" dev-python/pygtk
+	optfeature "Parallel computation" dev-python/dask
+	optfeature "io plugin providing most standard formats" dev-python/imread
+	optfeature "plotting" dev-python/matplotlib
+	optfeature "wavelet transformations" dev-python/pywavelets
+	optfeature "io plugin providing a wide variety of formats, including specialized formats using in medical imaging." dev-python/simpleitk
+}


^ permalink raw reply related	[flat|nested] 13+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-python/scikit-image/
@ 2024-06-19 13:14 Michał Górny
  0 siblings, 0 replies; 13+ messages in thread
From: Michał Górny @ 2024-06-19 13:14 UTC (permalink / raw
  To: gentoo-commits

commit:     8bde30814837180fd006943471796b382eadbc7c
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Wed Jun 19 12:23:07 2024 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Wed Jun 19 13:14:32 2024 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8bde3081

dev-python/scikit-image: Remove old

Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 dev-python/scikit-image/Manifest                   |  1 -
 dev-python/scikit-image/scikit-image-0.23.1.ebuild | 96 ----------------------
 2 files changed, 97 deletions(-)

diff --git a/dev-python/scikit-image/Manifest b/dev-python/scikit-image/Manifest
index 4b094ea850c7..881eab142ed9 100644
--- a/dev-python/scikit-image/Manifest
+++ b/dev-python/scikit-image/Manifest
@@ -1,3 +1,2 @@
 DIST scikit-image-data-15735b54e85c02427f07c71e6456723495034805.tar.bz2 143900901 BLAKE2B c1352e76337250fe1a9d6e07f08b6c9b1e0aed922ab8e0a3a4a1ea175f593b3375522e59550d30a22d392c34fef26d638c007c2af3d991887e02e7c68e56ebbb SHA512 d113dd258b35be710d841f9900cfbfe7103d1190b042489de88dd504b56277edac9a98fed5517e57725c5292fe26528267a06ff313bf6500b669d872c4481146
-DIST scikit_image-0.23.1.tar.gz 22676819 BLAKE2B 2d02bab4f8d6217c842f428a6758d467393a73a05ac741a49cd27fa6ee48335cf8fed4cc104296388d0e23c61ac3603f72d7bab44986c0d3d4073da383f89726 SHA512 7450387c3adcac15148c3ae4f43fd7da97ceabf3522302b7f3ab4cd02e5a9ec2cd9623f29e4aec3bb47668a231e0900724804619bb91aaaf97283d29c34392e6
 DIST scikit_image-0.23.2.tar.gz 22678261 BLAKE2B 11c44676e9f7bce7735e85d8416175a55b1808807b99597d60495dc2b0c961a05a514b5ec456665a25d31cc09a20e430c331cfd5bc10afa01ca4070722aa03f8 SHA512 8abf6c2bb92a75524d254265822cdc49db636a482efe0d6459fc113f6898bc5c19ad58905a5020a9c4262f55993ad2e8d13810023c62d06c5ee9854666f5337f

diff --git a/dev-python/scikit-image/scikit-image-0.23.1.ebuild b/dev-python/scikit-image/scikit-image-0.23.1.ebuild
deleted file mode 100644
index 2ec63290c17b..000000000000
--- a/dev-python/scikit-image/scikit-image-0.23.1.ebuild
+++ /dev/null
@@ -1,96 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_USE_PEP517=meson-python
-DISTUTILS_EXT=1
-PYTHON_COMPAT=( python3_{10..12} )
-
-inherit distutils-r1 optfeature pypi
-
-TEST_DATA_COMMIT=15735b54e85c02427f07c71e6456723495034805
-DESCRIPTION="Image processing routines for SciPy"
-HOMEPAGE="
-	https://scikit-image.org/
-	https://github.com/scikit-image/scikit-image/
-	https://pypi.org/project/scikit-image/
-"
-SRC_URI+="
-	test? (
-		https://gitlab.com/scikit-image/data/-/archive/${TEST_DATA_COMMIT}/scikit-image-data-${TEST_DATA_COMMIT}.tar.bz2
-	)
-"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~x86"
-
-RDEPEND="
-	>=dev-python/imageio-2.33[${PYTHON_USEDEP}]
-	>=dev-python/lazy-loader-0.4[${PYTHON_USEDEP}]
-	>=dev-python/networkx-2.8[${PYTHON_USEDEP}]
-	>=dev-python/numpy-1.23[${PYTHON_USEDEP}]
-	>=dev-python/pillow-9.1[${PYTHON_USEDEP}]
-	>=dev-python/scipy-1.9[sparse(+),${PYTHON_USEDEP}]
-	>=dev-python/tifffile-2022.8.12[${PYTHON_USEDEP}]
-"
-DEPEND="${RDEPEND}"
-BDEPEND="
-	>=dev-python/cython-3.0.4[${PYTHON_USEDEP}]
-	dev-python/packaging[${PYTHON_USEDEP}]
-	test? (
-		dev-python/pytest-localserver[${PYTHON_USEDEP}]
-	)
-"
-
-DOCS=( CONTRIBUTORS.txt RELEASE.txt )
-
-# xdist does not work with this test suite
-distutils_enable_tests pytest
-# There is a programmable error in your configuration file:
-#distutils_enable_sphinx doc/source dev-python/numpydoc dev-python/myst-parser
-
-src_test() {
-	# for some reason, upstream refetches data that's already in the tarball
-	# sigh
-	mkdir -p "${HOME}/.cache/scikit-image" || die
-	mv skimage "${HOME}/.cache/scikit-image/${PV/_/}" || die
-
-	# This is a true horror, sigh
-	local cache_dir=${HOME}/.cache/scikit-image/${PV/_/}/data
-	pushd "${WORKDIR}/data-${TEST_DATA_COMMIT}" >/dev/null || die
-	cp Tests_besides_Equalize_Otsu/add18_entropy/rank_filters_tests_3d.npz \
-		Tests_besides_Equalize_Otsu/gray_morph_output.npz \
-		brain.tiff cells3d.tif eagle.png \
-		"${cache_dir}/" || die
-	cp Normal_Epidermis_and_Dermis_with_Intradermal_Nevus_10x.JPG "${cache_dir}"/skin.jpg || die
-	cp pivchallenge/B/B001_1.tif "${cache_dir}"/pivchallenge-B-B001_1.tif || die
-	cp pivchallenge/B/B001_2.tif "${cache_dir}"/pivchallenge-B-B001_2.tif || die
-	cp kidney-tissue-fluorescence.tif "${cache_dir}"/kidney.tif || die
-	cp lily-of-the-valley-fluorescence.tif "${cache_dir}"/lily.tif || die
-	cp astronaut_rl.npy "${cache_dir}/../restoration/tests/" || die
-	popd > /dev/null || die
-
-	distutils-r1_src_test
-}
-
-python_test() {
-	local EPYTEST_DESELECT=(
-		# tests for downloading all data files, including these not needed
-		# by any actual tests
-		data/tests/test_data.py::test_download_all_with_pooch
-	)
-
-	local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
-	epytest --pyargs skimage -p localserver -o xfail_strict=False
-}
-
-pkg_postinst() {
-	optfeature "FITS io capability" dev-python/astropy
-	optfeature "GTK" dev-python/pygtk
-	optfeature "io plugin providing most standard formats" dev-python/imread
-	optfeature "plotting" dev-python/matplotlib
-	optfeature "wavelet transformations" dev-python/pywavelets
-	optfeature "io plugin providing a wide variety of formats, including specialized formats using in medical imaging." dev-python/simpleitk
-}


^ permalink raw reply related	[flat|nested] 13+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-python/scikit-image/
@ 2024-06-19 13:14 Michał Górny
  0 siblings, 0 replies; 13+ messages in thread
From: Michał Górny @ 2024-06-19 13:14 UTC (permalink / raw
  To: gentoo-commits

commit:     90f56a3352545c23a9fdb86b515aa6ce1d5e26b0
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Wed Jun 19 12:47:59 2024 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Wed Jun 19 13:14:33 2024 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=90f56a33

dev-python/scikit-image: Bump to 0.24.0

Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 dev-python/scikit-image/Manifest                   |  1 +
 dev-python/scikit-image/scikit-image-0.24.0.ebuild | 96 ++++++++++++++++++++++
 2 files changed, 97 insertions(+)

diff --git a/dev-python/scikit-image/Manifest b/dev-python/scikit-image/Manifest
index 881eab142ed9..640af69cc674 100644
--- a/dev-python/scikit-image/Manifest
+++ b/dev-python/scikit-image/Manifest
@@ -1,2 +1,3 @@
 DIST scikit-image-data-15735b54e85c02427f07c71e6456723495034805.tar.bz2 143900901 BLAKE2B c1352e76337250fe1a9d6e07f08b6c9b1e0aed922ab8e0a3a4a1ea175f593b3375522e59550d30a22d392c34fef26d638c007c2af3d991887e02e7c68e56ebbb SHA512 d113dd258b35be710d841f9900cfbfe7103d1190b042489de88dd504b56277edac9a98fed5517e57725c5292fe26528267a06ff313bf6500b669d872c4481146
 DIST scikit_image-0.23.2.tar.gz 22678261 BLAKE2B 11c44676e9f7bce7735e85d8416175a55b1808807b99597d60495dc2b0c961a05a514b5ec456665a25d31cc09a20e430c331cfd5bc10afa01ca4070722aa03f8 SHA512 8abf6c2bb92a75524d254265822cdc49db636a482efe0d6459fc113f6898bc5c19ad58905a5020a9c4262f55993ad2e8d13810023c62d06c5ee9854666f5337f
+DIST scikit_image-0.24.0.tar.gz 22693928 BLAKE2B f165f702908fe446b459de3db0ec056a4b79d7266f85bc81c991569c1e492c22d238e8553d8f035abd83d4d3c4b449304e74b55d8bf558cac977c3ea5f0c864a SHA512 becb062725b4c1f64e12a1f775175e48dbce1b989c1e8f40ec04ff79cb926740be514b9a0a68e3f9e17fb0d3c7b860c7451b91eb178bbae93521e02e3e8e92db

diff --git a/dev-python/scikit-image/scikit-image-0.24.0.ebuild b/dev-python/scikit-image/scikit-image-0.24.0.ebuild
new file mode 100644
index 000000000000..2ec63290c17b
--- /dev/null
+++ b/dev-python/scikit-image/scikit-image-0.24.0.ebuild
@@ -0,0 +1,96 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=meson-python
+DISTUTILS_EXT=1
+PYTHON_COMPAT=( python3_{10..12} )
+
+inherit distutils-r1 optfeature pypi
+
+TEST_DATA_COMMIT=15735b54e85c02427f07c71e6456723495034805
+DESCRIPTION="Image processing routines for SciPy"
+HOMEPAGE="
+	https://scikit-image.org/
+	https://github.com/scikit-image/scikit-image/
+	https://pypi.org/project/scikit-image/
+"
+SRC_URI+="
+	test? (
+		https://gitlab.com/scikit-image/data/-/archive/${TEST_DATA_COMMIT}/scikit-image-data-${TEST_DATA_COMMIT}.tar.bz2
+	)
+"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~x86"
+
+RDEPEND="
+	>=dev-python/imageio-2.33[${PYTHON_USEDEP}]
+	>=dev-python/lazy-loader-0.4[${PYTHON_USEDEP}]
+	>=dev-python/networkx-2.8[${PYTHON_USEDEP}]
+	>=dev-python/numpy-1.23[${PYTHON_USEDEP}]
+	>=dev-python/pillow-9.1[${PYTHON_USEDEP}]
+	>=dev-python/scipy-1.9[sparse(+),${PYTHON_USEDEP}]
+	>=dev-python/tifffile-2022.8.12[${PYTHON_USEDEP}]
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	>=dev-python/cython-3.0.4[${PYTHON_USEDEP}]
+	dev-python/packaging[${PYTHON_USEDEP}]
+	test? (
+		dev-python/pytest-localserver[${PYTHON_USEDEP}]
+	)
+"
+
+DOCS=( CONTRIBUTORS.txt RELEASE.txt )
+
+# xdist does not work with this test suite
+distutils_enable_tests pytest
+# There is a programmable error in your configuration file:
+#distutils_enable_sphinx doc/source dev-python/numpydoc dev-python/myst-parser
+
+src_test() {
+	# for some reason, upstream refetches data that's already in the tarball
+	# sigh
+	mkdir -p "${HOME}/.cache/scikit-image" || die
+	mv skimage "${HOME}/.cache/scikit-image/${PV/_/}" || die
+
+	# This is a true horror, sigh
+	local cache_dir=${HOME}/.cache/scikit-image/${PV/_/}/data
+	pushd "${WORKDIR}/data-${TEST_DATA_COMMIT}" >/dev/null || die
+	cp Tests_besides_Equalize_Otsu/add18_entropy/rank_filters_tests_3d.npz \
+		Tests_besides_Equalize_Otsu/gray_morph_output.npz \
+		brain.tiff cells3d.tif eagle.png \
+		"${cache_dir}/" || die
+	cp Normal_Epidermis_and_Dermis_with_Intradermal_Nevus_10x.JPG "${cache_dir}"/skin.jpg || die
+	cp pivchallenge/B/B001_1.tif "${cache_dir}"/pivchallenge-B-B001_1.tif || die
+	cp pivchallenge/B/B001_2.tif "${cache_dir}"/pivchallenge-B-B001_2.tif || die
+	cp kidney-tissue-fluorescence.tif "${cache_dir}"/kidney.tif || die
+	cp lily-of-the-valley-fluorescence.tif "${cache_dir}"/lily.tif || die
+	cp astronaut_rl.npy "${cache_dir}/../restoration/tests/" || die
+	popd > /dev/null || die
+
+	distutils-r1_src_test
+}
+
+python_test() {
+	local EPYTEST_DESELECT=(
+		# tests for downloading all data files, including these not needed
+		# by any actual tests
+		data/tests/test_data.py::test_download_all_with_pooch
+	)
+
+	local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
+	epytest --pyargs skimage -p localserver -o xfail_strict=False
+}
+
+pkg_postinst() {
+	optfeature "FITS io capability" dev-python/astropy
+	optfeature "GTK" dev-python/pygtk
+	optfeature "io plugin providing most standard formats" dev-python/imread
+	optfeature "plotting" dev-python/matplotlib
+	optfeature "wavelet transformations" dev-python/pywavelets
+	optfeature "io plugin providing a wide variety of formats, including specialized formats using in medical imaging." dev-python/simpleitk
+}


^ permalink raw reply related	[flat|nested] 13+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-python/scikit-image/
@ 2024-08-17 16:55 Michał Górny
  0 siblings, 0 replies; 13+ messages in thread
From: Michał Górny @ 2024-08-17 16:55 UTC (permalink / raw
  To: gentoo-commits

commit:     6d419e576943ea7ad338db76c2df98ee19eda99c
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Sat Aug 17 16:23:47 2024 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Sat Aug 17 16:55:08 2024 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6d419e57

dev-python/scikit-image: Remove old

Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 dev-python/scikit-image/Manifest                   |  1 -
 dev-python/scikit-image/scikit-image-0.23.2.ebuild | 96 ----------------------
 2 files changed, 97 deletions(-)

diff --git a/dev-python/scikit-image/Manifest b/dev-python/scikit-image/Manifest
index 640af69cc674..29998cb5ffb7 100644
--- a/dev-python/scikit-image/Manifest
+++ b/dev-python/scikit-image/Manifest
@@ -1,3 +1,2 @@
 DIST scikit-image-data-15735b54e85c02427f07c71e6456723495034805.tar.bz2 143900901 BLAKE2B c1352e76337250fe1a9d6e07f08b6c9b1e0aed922ab8e0a3a4a1ea175f593b3375522e59550d30a22d392c34fef26d638c007c2af3d991887e02e7c68e56ebbb SHA512 d113dd258b35be710d841f9900cfbfe7103d1190b042489de88dd504b56277edac9a98fed5517e57725c5292fe26528267a06ff313bf6500b669d872c4481146
-DIST scikit_image-0.23.2.tar.gz 22678261 BLAKE2B 11c44676e9f7bce7735e85d8416175a55b1808807b99597d60495dc2b0c961a05a514b5ec456665a25d31cc09a20e430c331cfd5bc10afa01ca4070722aa03f8 SHA512 8abf6c2bb92a75524d254265822cdc49db636a482efe0d6459fc113f6898bc5c19ad58905a5020a9c4262f55993ad2e8d13810023c62d06c5ee9854666f5337f
 DIST scikit_image-0.24.0.tar.gz 22693928 BLAKE2B f165f702908fe446b459de3db0ec056a4b79d7266f85bc81c991569c1e492c22d238e8553d8f035abd83d4d3c4b449304e74b55d8bf558cac977c3ea5f0c864a SHA512 becb062725b4c1f64e12a1f775175e48dbce1b989c1e8f40ec04ff79cb926740be514b9a0a68e3f9e17fb0d3c7b860c7451b91eb178bbae93521e02e3e8e92db

diff --git a/dev-python/scikit-image/scikit-image-0.23.2.ebuild b/dev-python/scikit-image/scikit-image-0.23.2.ebuild
deleted file mode 100644
index 2ec63290c17b..000000000000
--- a/dev-python/scikit-image/scikit-image-0.23.2.ebuild
+++ /dev/null
@@ -1,96 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_USE_PEP517=meson-python
-DISTUTILS_EXT=1
-PYTHON_COMPAT=( python3_{10..12} )
-
-inherit distutils-r1 optfeature pypi
-
-TEST_DATA_COMMIT=15735b54e85c02427f07c71e6456723495034805
-DESCRIPTION="Image processing routines for SciPy"
-HOMEPAGE="
-	https://scikit-image.org/
-	https://github.com/scikit-image/scikit-image/
-	https://pypi.org/project/scikit-image/
-"
-SRC_URI+="
-	test? (
-		https://gitlab.com/scikit-image/data/-/archive/${TEST_DATA_COMMIT}/scikit-image-data-${TEST_DATA_COMMIT}.tar.bz2
-	)
-"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~x86"
-
-RDEPEND="
-	>=dev-python/imageio-2.33[${PYTHON_USEDEP}]
-	>=dev-python/lazy-loader-0.4[${PYTHON_USEDEP}]
-	>=dev-python/networkx-2.8[${PYTHON_USEDEP}]
-	>=dev-python/numpy-1.23[${PYTHON_USEDEP}]
-	>=dev-python/pillow-9.1[${PYTHON_USEDEP}]
-	>=dev-python/scipy-1.9[sparse(+),${PYTHON_USEDEP}]
-	>=dev-python/tifffile-2022.8.12[${PYTHON_USEDEP}]
-"
-DEPEND="${RDEPEND}"
-BDEPEND="
-	>=dev-python/cython-3.0.4[${PYTHON_USEDEP}]
-	dev-python/packaging[${PYTHON_USEDEP}]
-	test? (
-		dev-python/pytest-localserver[${PYTHON_USEDEP}]
-	)
-"
-
-DOCS=( CONTRIBUTORS.txt RELEASE.txt )
-
-# xdist does not work with this test suite
-distutils_enable_tests pytest
-# There is a programmable error in your configuration file:
-#distutils_enable_sphinx doc/source dev-python/numpydoc dev-python/myst-parser
-
-src_test() {
-	# for some reason, upstream refetches data that's already in the tarball
-	# sigh
-	mkdir -p "${HOME}/.cache/scikit-image" || die
-	mv skimage "${HOME}/.cache/scikit-image/${PV/_/}" || die
-
-	# This is a true horror, sigh
-	local cache_dir=${HOME}/.cache/scikit-image/${PV/_/}/data
-	pushd "${WORKDIR}/data-${TEST_DATA_COMMIT}" >/dev/null || die
-	cp Tests_besides_Equalize_Otsu/add18_entropy/rank_filters_tests_3d.npz \
-		Tests_besides_Equalize_Otsu/gray_morph_output.npz \
-		brain.tiff cells3d.tif eagle.png \
-		"${cache_dir}/" || die
-	cp Normal_Epidermis_and_Dermis_with_Intradermal_Nevus_10x.JPG "${cache_dir}"/skin.jpg || die
-	cp pivchallenge/B/B001_1.tif "${cache_dir}"/pivchallenge-B-B001_1.tif || die
-	cp pivchallenge/B/B001_2.tif "${cache_dir}"/pivchallenge-B-B001_2.tif || die
-	cp kidney-tissue-fluorescence.tif "${cache_dir}"/kidney.tif || die
-	cp lily-of-the-valley-fluorescence.tif "${cache_dir}"/lily.tif || die
-	cp astronaut_rl.npy "${cache_dir}/../restoration/tests/" || die
-	popd > /dev/null || die
-
-	distutils-r1_src_test
-}
-
-python_test() {
-	local EPYTEST_DESELECT=(
-		# tests for downloading all data files, including these not needed
-		# by any actual tests
-		data/tests/test_data.py::test_download_all_with_pooch
-	)
-
-	local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
-	epytest --pyargs skimage -p localserver -o xfail_strict=False
-}
-
-pkg_postinst() {
-	optfeature "FITS io capability" dev-python/astropy
-	optfeature "GTK" dev-python/pygtk
-	optfeature "io plugin providing most standard formats" dev-python/imread
-	optfeature "plotting" dev-python/matplotlib
-	optfeature "wavelet transformations" dev-python/pywavelets
-	optfeature "io plugin providing a wide variety of formats, including specialized formats using in medical imaging." dev-python/simpleitk
-}


^ permalink raw reply related	[flat|nested] 13+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-python/scikit-image/
@ 2024-12-11  7:54 Michał Górny
  0 siblings, 0 replies; 13+ messages in thread
From: Michał Górny @ 2024-12-11  7:54 UTC (permalink / raw
  To: gentoo-commits

commit:     a4fbcc08fa9b4828579651e52860973178d1c10b
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Wed Dec 11 07:12:38 2024 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Wed Dec 11 07:54:20 2024 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a4fbcc08

dev-python/scikit-image: Bump to 0.25.0_rc2

Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 dev-python/scikit-image/Manifest                   |  1 +
 .../scikit-image/scikit-image-0.25.0_rc2.ebuild    | 94 ++++++++++++++++++++++
 2 files changed, 95 insertions(+)

diff --git a/dev-python/scikit-image/Manifest b/dev-python/scikit-image/Manifest
index 29998cb5ffb7..64265f8172a8 100644
--- a/dev-python/scikit-image/Manifest
+++ b/dev-python/scikit-image/Manifest
@@ -1,2 +1,3 @@
 DIST scikit-image-data-15735b54e85c02427f07c71e6456723495034805.tar.bz2 143900901 BLAKE2B c1352e76337250fe1a9d6e07f08b6c9b1e0aed922ab8e0a3a4a1ea175f593b3375522e59550d30a22d392c34fef26d638c007c2af3d991887e02e7c68e56ebbb SHA512 d113dd258b35be710d841f9900cfbfe7103d1190b042489de88dd504b56277edac9a98fed5517e57725c5292fe26528267a06ff313bf6500b669d872c4481146
 DIST scikit_image-0.24.0.tar.gz 22693928 BLAKE2B f165f702908fe446b459de3db0ec056a4b79d7266f85bc81c991569c1e492c22d238e8553d8f035abd83d4d3c4b449304e74b55d8bf558cac977c3ea5f0c864a SHA512 becb062725b4c1f64e12a1f775175e48dbce1b989c1e8f40ec04ff79cb926740be514b9a0a68e3f9e17fb0d3c7b860c7451b91eb178bbae93521e02e3e8e92db
+DIST scikit_image-0.25.0rc2.tar.gz 22697011 BLAKE2B 55fa48357343ff7663c5a956042e8914b62fe78b82085035276fb11cf10864f1d06a3f31247b766c294b91419825c3199c22b533c4e6207b5bdb152090aefbcc SHA512 4c418f6eebba394dab7d297deafc518be815be205f7701458b1adf3a9d3102c7be76ebd93d72fac78d990bfa0e06e749925c995e23315f2c23da560f93cf6867

diff --git a/dev-python/scikit-image/scikit-image-0.25.0_rc2.ebuild b/dev-python/scikit-image/scikit-image-0.25.0_rc2.ebuild
new file mode 100644
index 000000000000..7766d2714b74
--- /dev/null
+++ b/dev-python/scikit-image/scikit-image-0.25.0_rc2.ebuild
@@ -0,0 +1,94 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=meson-python
+DISTUTILS_EXT=1
+PYTHON_COMPAT=( python3_{10..13} )
+
+inherit distutils-r1 optfeature pypi
+
+TEST_DATA_COMMIT=15735b54e85c02427f07c71e6456723495034805
+DESCRIPTION="Image processing routines for SciPy"
+HOMEPAGE="
+	https://scikit-image.org/
+	https://github.com/scikit-image/scikit-image/
+	https://pypi.org/project/scikit-image/
+"
+SRC_URI+="
+	test? (
+		https://gitlab.com/scikit-image/data/-/archive/${TEST_DATA_COMMIT}/scikit-image-data-${TEST_DATA_COMMIT}.tar.bz2
+	)
+"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~x86"
+
+RDEPEND="
+	>=dev-python/imageio-2.36[${PYTHON_USEDEP}]
+	>=dev-python/lazy-loader-0.4[${PYTHON_USEDEP}]
+	>=dev-python/networkx-3.0[${PYTHON_USEDEP}]
+	>=dev-python/numpy-1.24[${PYTHON_USEDEP}]
+	>=dev-python/pillow-10.1[${PYTHON_USEDEP}]
+	>=dev-python/scipy-1.11.2[sparse(+),${PYTHON_USEDEP}]
+	>=dev-python/tifffile-2022.8.12[${PYTHON_USEDEP}]
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	>=dev-python/cython-3.0.4[${PYTHON_USEDEP}]
+	dev-python/packaging[${PYTHON_USEDEP}]
+	test? (
+		dev-python/pytest-localserver[${PYTHON_USEDEP}]
+	)
+"
+
+# xdist does not work with this test suite
+distutils_enable_tests pytest
+# There is a programmable error in your configuration file:
+#distutils_enable_sphinx doc/source dev-python/numpydoc dev-python/myst-parser
+
+src_test() {
+	# for some reason, upstream refetches data that's already in the tarball
+	# sigh
+	mkdir -p "${HOME}/.cache/scikit-image" || die
+	mv skimage "${HOME}/.cache/scikit-image/${PV/_/}" || die
+
+	# This is a true horror, sigh
+	local cache_dir=${HOME}/.cache/scikit-image/${PV/_/}/data
+	pushd "${WORKDIR}/data-${TEST_DATA_COMMIT}" >/dev/null || die
+	cp Tests_besides_Equalize_Otsu/add18_entropy/rank_filters_tests_3d.npz \
+		Tests_besides_Equalize_Otsu/gray_morph_output.npz \
+		brain.tiff cells3d.tif eagle.png \
+		"${cache_dir}/" || die
+	cp Normal_Epidermis_and_Dermis_with_Intradermal_Nevus_10x.JPG "${cache_dir}"/skin.jpg || die
+	cp pivchallenge/B/B001_1.tif "${cache_dir}"/pivchallenge-B-B001_1.tif || die
+	cp pivchallenge/B/B001_2.tif "${cache_dir}"/pivchallenge-B-B001_2.tif || die
+	cp kidney-tissue-fluorescence.tif "${cache_dir}"/kidney.tif || die
+	cp lily-of-the-valley-fluorescence.tif "${cache_dir}"/lily.tif || die
+	cp astronaut_rl.npy "${cache_dir}/../restoration/tests/" || die
+	popd > /dev/null || die
+
+	distutils-r1_src_test
+}
+
+python_test() {
+	local EPYTEST_DESELECT=(
+		# tests for downloading all data files, including these not needed
+		# by any actual tests
+		data/tests/test_data.py::test_download_all_with_pooch
+	)
+
+	local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
+	epytest --pyargs skimage -p localserver -o xfail_strict=False
+}
+
+pkg_postinst() {
+	optfeature "FITS io capability" dev-python/astropy
+	optfeature "GTK" dev-python/pygtk
+	optfeature "io plugin providing most standard formats" dev-python/imread
+	optfeature "plotting" dev-python/matplotlib
+	optfeature "wavelet transformations" dev-python/pywavelets
+	optfeature "io plugin providing a wide variety of formats, including specialized formats using in medical imaging." dev-python/simpleitk
+}


^ permalink raw reply related	[flat|nested] 13+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-python/scikit-image/
@ 2024-12-14  9:23 Michał Górny
  0 siblings, 0 replies; 13+ messages in thread
From: Michał Górny @ 2024-12-14  9:23 UTC (permalink / raw
  To: gentoo-commits

commit:     dfb97d60466bd705c306f4b9cda5cda94cdabee5
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Sat Dec 14 06:44:49 2024 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Sat Dec 14 09:23:18 2024 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=dfb97d60

dev-python/scikit-image: Bump to 0.25.0

Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 dev-python/scikit-image/Manifest                   |  1 +
 dev-python/scikit-image/scikit-image-0.25.0.ebuild | 96 ++++++++++++++++++++++
 2 files changed, 97 insertions(+)

diff --git a/dev-python/scikit-image/Manifest b/dev-python/scikit-image/Manifest
index 64265f8172a8..b94876414f28 100644
--- a/dev-python/scikit-image/Manifest
+++ b/dev-python/scikit-image/Manifest
@@ -1,3 +1,4 @@
 DIST scikit-image-data-15735b54e85c02427f07c71e6456723495034805.tar.bz2 143900901 BLAKE2B c1352e76337250fe1a9d6e07f08b6c9b1e0aed922ab8e0a3a4a1ea175f593b3375522e59550d30a22d392c34fef26d638c007c2af3d991887e02e7c68e56ebbb SHA512 d113dd258b35be710d841f9900cfbfe7103d1190b042489de88dd504b56277edac9a98fed5517e57725c5292fe26528267a06ff313bf6500b669d872c4481146
 DIST scikit_image-0.24.0.tar.gz 22693928 BLAKE2B f165f702908fe446b459de3db0ec056a4b79d7266f85bc81c991569c1e492c22d238e8553d8f035abd83d4d3c4b449304e74b55d8bf558cac977c3ea5f0c864a SHA512 becb062725b4c1f64e12a1f775175e48dbce1b989c1e8f40ec04ff79cb926740be514b9a0a68e3f9e17fb0d3c7b860c7451b91eb178bbae93521e02e3e8e92db
+DIST scikit_image-0.25.0.tar.gz 22696477 BLAKE2B 6a19d10c8475e4975f9648befad410362b9cdfffcb2dd39c510d79f0498f33c305374996f4492b6f8b3d267da913f8f763d8834faae1a5949363f314f0a43fbd SHA512 b8954dd74177838f93e15f3f818868cac0f463fef420c1fabc297e691ff7c6bf2b243715b562054d38ef7fa3483eebe5f95a9e045974bcee136b32a283e1902f
 DIST scikit_image-0.25.0rc2.tar.gz 22697011 BLAKE2B 55fa48357343ff7663c5a956042e8914b62fe78b82085035276fb11cf10864f1d06a3f31247b766c294b91419825c3199c22b533c4e6207b5bdb152090aefbcc SHA512 4c418f6eebba394dab7d297deafc518be815be205f7701458b1adf3a9d3102c7be76ebd93d72fac78d990bfa0e06e749925c995e23315f2c23da560f93cf6867

diff --git a/dev-python/scikit-image/scikit-image-0.25.0.ebuild b/dev-python/scikit-image/scikit-image-0.25.0.ebuild
new file mode 100644
index 000000000000..d2280870fe81
--- /dev/null
+++ b/dev-python/scikit-image/scikit-image-0.25.0.ebuild
@@ -0,0 +1,96 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=meson-python
+DISTUTILS_EXT=1
+PYTHON_COMPAT=( python3_{10..13} )
+
+inherit distutils-r1 optfeature pypi
+
+TEST_DATA_COMMIT=15735b54e85c02427f07c71e6456723495034805
+DESCRIPTION="Image processing routines for SciPy"
+HOMEPAGE="
+	https://scikit-image.org/
+	https://github.com/scikit-image/scikit-image/
+	https://pypi.org/project/scikit-image/
+"
+SRC_URI+="
+	test? (
+		https://gitlab.com/scikit-image/data/-/archive/${TEST_DATA_COMMIT}/scikit-image-data-${TEST_DATA_COMMIT}.tar.bz2
+	)
+"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~x86"
+
+RDEPEND="
+	>=dev-python/imageio-2.36[${PYTHON_USEDEP}]
+	>=dev-python/lazy-loader-0.4[${PYTHON_USEDEP}]
+	>=dev-python/networkx-3.0[${PYTHON_USEDEP}]
+	>=dev-python/numpy-1.24[${PYTHON_USEDEP}]
+	>=dev-python/pillow-10.1[${PYTHON_USEDEP}]
+	>=dev-python/scipy-1.11.2[sparse(+),${PYTHON_USEDEP}]
+	>=dev-python/tifffile-2022.8.12[${PYTHON_USEDEP}]
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	>=dev-python/cython-3.0.4[${PYTHON_USEDEP}]
+	dev-python/packaging[${PYTHON_USEDEP}]
+	test? (
+		dev-python/pytest-localserver[${PYTHON_USEDEP}]
+	)
+"
+
+# xdist does not work with this test suite
+distutils_enable_tests pytest
+# There is a programmable error in your configuration file:
+#distutils_enable_sphinx doc/source dev-python/numpydoc dev-python/myst-parser
+
+src_test() {
+	# for some reason, upstream refetches data that's already in the tarball
+	# sigh
+	mkdir -p "${HOME}/.cache/scikit-image" || die
+	mv skimage "${HOME}/.cache/scikit-image/${PV/_/}" || die
+
+	# This is a true horror, sigh
+	local cache_dir=${HOME}/.cache/scikit-image/${PV/_/}/data
+	pushd "${WORKDIR}/data-${TEST_DATA_COMMIT}" >/dev/null || die
+	cp Tests_besides_Equalize_Otsu/add18_entropy/rank_filters_tests_3d.npz \
+		Tests_besides_Equalize_Otsu/gray_morph_output.npz \
+		brain.tiff cells3d.tif eagle.png \
+		"${cache_dir}/" || die
+	cp Normal_Epidermis_and_Dermis_with_Intradermal_Nevus_10x.JPG "${cache_dir}"/skin.jpg || die
+	cp pivchallenge/B/B001_1.tif "${cache_dir}"/pivchallenge-B-B001_1.tif || die
+	cp pivchallenge/B/B001_2.tif "${cache_dir}"/pivchallenge-B-B001_2.tif || die
+	cp kidney-tissue-fluorescence.tif "${cache_dir}"/kidney.tif || die
+	cp lily-of-the-valley-fluorescence.tif "${cache_dir}"/lily.tif || die
+	cp astronaut_rl.npy "${cache_dir}/../restoration/tests/" || die
+	popd > /dev/null || die
+
+	distutils-r1_src_test
+}
+
+python_test() {
+	local EPYTEST_DESELECT=(
+		# tests for downloading all data files, including these not needed
+		# by any actual tests
+		data/tests/test_data.py::test_download_all_with_pooch
+		# hangs? TODO
+		graph/tests/test_rag.py::test_reproducibility
+	)
+
+	local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
+	epytest --pyargs skimage -p localserver -o xfail_strict=False
+}
+
+pkg_postinst() {
+	optfeature "FITS io capability" dev-python/astropy
+	optfeature "GTK" dev-python/pygtk
+	optfeature "io plugin providing most standard formats" dev-python/imread
+	optfeature "plotting" dev-python/matplotlib
+	optfeature "wavelet transformations" dev-python/pywavelets
+	optfeature "io plugin providing a wide variety of formats, including specialized formats using in medical imaging." dev-python/simpleitk
+}


^ permalink raw reply related	[flat|nested] 13+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-python/scikit-image/
@ 2025-01-27  7:28 Michał Górny
  0 siblings, 0 replies; 13+ messages in thread
From: Michał Górny @ 2025-01-27  7:28 UTC (permalink / raw
  To: gentoo-commits

commit:     d17ed39019a981e55c6ab0408f8858164c52e53c
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Mon Jan 27 06:24:24 2025 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Mon Jan 27 07:28:48 2025 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d17ed390

dev-python/scikit-image: Bump to 0.25.1

Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 dev-python/scikit-image/Manifest                   |  1 +
 dev-python/scikit-image/scikit-image-0.25.1.ebuild | 96 ++++++++++++++++++++++
 2 files changed, 97 insertions(+)

diff --git a/dev-python/scikit-image/Manifest b/dev-python/scikit-image/Manifest
index 8a8c3741abed..1ca72e8a16df 100644
--- a/dev-python/scikit-image/Manifest
+++ b/dev-python/scikit-image/Manifest
@@ -1,2 +1,3 @@
 DIST scikit-image-data-15735b54e85c02427f07c71e6456723495034805.tar.bz2 143900901 BLAKE2B c1352e76337250fe1a9d6e07f08b6c9b1e0aed922ab8e0a3a4a1ea175f593b3375522e59550d30a22d392c34fef26d638c007c2af3d991887e02e7c68e56ebbb SHA512 d113dd258b35be710d841f9900cfbfe7103d1190b042489de88dd504b56277edac9a98fed5517e57725c5292fe26528267a06ff313bf6500b669d872c4481146
 DIST scikit_image-0.25.0.tar.gz 22696477 BLAKE2B 6a19d10c8475e4975f9648befad410362b9cdfffcb2dd39c510d79f0498f33c305374996f4492b6f8b3d267da913f8f763d8834faae1a5949363f314f0a43fbd SHA512 b8954dd74177838f93e15f3f818868cac0f463fef420c1fabc297e691ff7c6bf2b243715b562054d38ef7fa3483eebe5f95a9e045974bcee136b32a283e1902f
+DIST scikit_image-0.25.1.tar.gz 22697578 BLAKE2B ff4533d3d705f4dbb919578af3a976e1e09c1dadbcb26b15fe421aefe9cd1ce0d891a268844a21c47696db69470ffd6951db918496149accee47100c7d42521c SHA512 ede7fa3fdfda2440e5590a14b46b161418da3908674158b8592299d0b611913cdf4821761fcab6673470a33d178ec336d4d60d03fb9a072ed23e4f178a3eb0d8

diff --git a/dev-python/scikit-image/scikit-image-0.25.1.ebuild b/dev-python/scikit-image/scikit-image-0.25.1.ebuild
new file mode 100644
index 000000000000..385fcfede7ab
--- /dev/null
+++ b/dev-python/scikit-image/scikit-image-0.25.1.ebuild
@@ -0,0 +1,96 @@
+# Copyright 1999-2025 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=meson-python
+DISTUTILS_EXT=1
+PYTHON_COMPAT=( python3_{10..13} )
+
+inherit distutils-r1 optfeature pypi
+
+TEST_DATA_COMMIT=15735b54e85c02427f07c71e6456723495034805
+DESCRIPTION="Image processing routines for SciPy"
+HOMEPAGE="
+	https://scikit-image.org/
+	https://github.com/scikit-image/scikit-image/
+	https://pypi.org/project/scikit-image/
+"
+SRC_URI+="
+	test? (
+		https://gitlab.com/scikit-image/data/-/archive/${TEST_DATA_COMMIT}/scikit-image-data-${TEST_DATA_COMMIT}.tar.bz2
+	)
+"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~x86"
+
+RDEPEND="
+	>=dev-python/imageio-2.36[${PYTHON_USEDEP}]
+	>=dev-python/lazy-loader-0.4[${PYTHON_USEDEP}]
+	>=dev-python/networkx-3.0[${PYTHON_USEDEP}]
+	>=dev-python/numpy-1.24[${PYTHON_USEDEP}]
+	>=dev-python/pillow-10.1[${PYTHON_USEDEP}]
+	>=dev-python/scipy-1.11.2[sparse(+),${PYTHON_USEDEP}]
+	>=dev-python/tifffile-2022.8.12[${PYTHON_USEDEP}]
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	>=dev-python/cython-3.0.4[${PYTHON_USEDEP}]
+	dev-python/packaging[${PYTHON_USEDEP}]
+	test? (
+		dev-python/pytest-localserver[${PYTHON_USEDEP}]
+	)
+"
+
+# xdist does not work with this test suite
+distutils_enable_tests pytest
+# There is a programmable error in your configuration file:
+#distutils_enable_sphinx doc/source dev-python/numpydoc dev-python/myst-parser
+
+src_test() {
+	# for some reason, upstream refetches data that's already in the tarball
+	# sigh
+	mkdir -p "${HOME}/.cache/scikit-image" || die
+	mv skimage "${HOME}/.cache/scikit-image/${PV/_/}" || die
+
+	# This is a true horror, sigh
+	local cache_dir=${HOME}/.cache/scikit-image/${PV/_/}/data
+	pushd "${WORKDIR}/data-${TEST_DATA_COMMIT}" >/dev/null || die
+	cp Tests_besides_Equalize_Otsu/add18_entropy/rank_filters_tests_3d.npz \
+		Tests_besides_Equalize_Otsu/gray_morph_output.npz \
+		brain.tiff cells3d.tif eagle.png \
+		"${cache_dir}/" || die
+	cp Normal_Epidermis_and_Dermis_with_Intradermal_Nevus_10x.JPG "${cache_dir}"/skin.jpg || die
+	cp pivchallenge/B/B001_1.tif "${cache_dir}"/pivchallenge-B-B001_1.tif || die
+	cp pivchallenge/B/B001_2.tif "${cache_dir}"/pivchallenge-B-B001_2.tif || die
+	cp kidney-tissue-fluorescence.tif "${cache_dir}"/kidney.tif || die
+	cp lily-of-the-valley-fluorescence.tif "${cache_dir}"/lily.tif || die
+	cp astronaut_rl.npy "${cache_dir}/../restoration/tests/" || die
+	popd > /dev/null || die
+
+	distutils-r1_src_test
+}
+
+python_test() {
+	local EPYTEST_DESELECT=(
+		# tests for downloading all data files, including these not needed
+		# by any actual tests
+		data/tests/test_data.py::test_download_all_with_pooch
+		# hangs? TODO
+		graph/tests/test_rag.py::test_reproducibility
+	)
+
+	local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
+	epytest --pyargs skimage -p localserver -o xfail_strict=False
+}
+
+pkg_postinst() {
+	optfeature "FITS io capability" dev-python/astropy
+	optfeature "GTK" dev-python/pygtk
+	optfeature "io plugin providing most standard formats" dev-python/imread
+	optfeature "plotting" dev-python/matplotlib
+	optfeature "wavelet transformations" dev-python/pywavelets
+	optfeature "io plugin providing a wide variety of formats, including specialized formats using in medical imaging." dev-python/simpleitk
+}


^ permalink raw reply related	[flat|nested] 13+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-python/scikit-image/
@ 2025-02-19  7:56 Michał Górny
  0 siblings, 0 replies; 13+ messages in thread
From: Michał Górny @ 2025-02-19  7:56 UTC (permalink / raw
  To: gentoo-commits

commit:     d7fe32551ad119e18249e8e78b96393b9882dbd7
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Wed Feb 19 06:39:22 2025 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Wed Feb 19 07:56:30 2025 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d7fe3255

dev-python/scikit-image: Bump to 0.25.2

Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 dev-python/scikit-image/Manifest                   |  1 +
 dev-python/scikit-image/scikit-image-0.25.2.ebuild | 96 ++++++++++++++++++++++
 2 files changed, 97 insertions(+)

diff --git a/dev-python/scikit-image/Manifest b/dev-python/scikit-image/Manifest
index 1ca72e8a16df..486fc98dcb1c 100644
--- a/dev-python/scikit-image/Manifest
+++ b/dev-python/scikit-image/Manifest
@@ -1,3 +1,4 @@
 DIST scikit-image-data-15735b54e85c02427f07c71e6456723495034805.tar.bz2 143900901 BLAKE2B c1352e76337250fe1a9d6e07f08b6c9b1e0aed922ab8e0a3a4a1ea175f593b3375522e59550d30a22d392c34fef26d638c007c2af3d991887e02e7c68e56ebbb SHA512 d113dd258b35be710d841f9900cfbfe7103d1190b042489de88dd504b56277edac9a98fed5517e57725c5292fe26528267a06ff313bf6500b669d872c4481146
 DIST scikit_image-0.25.0.tar.gz 22696477 BLAKE2B 6a19d10c8475e4975f9648befad410362b9cdfffcb2dd39c510d79f0498f33c305374996f4492b6f8b3d267da913f8f763d8834faae1a5949363f314f0a43fbd SHA512 b8954dd74177838f93e15f3f818868cac0f463fef420c1fabc297e691ff7c6bf2b243715b562054d38ef7fa3483eebe5f95a9e045974bcee136b32a283e1902f
 DIST scikit_image-0.25.1.tar.gz 22697578 BLAKE2B ff4533d3d705f4dbb919578af3a976e1e09c1dadbcb26b15fe421aefe9cd1ce0d891a268844a21c47696db69470ffd6951db918496149accee47100c7d42521c SHA512 ede7fa3fdfda2440e5590a14b46b161418da3908674158b8592299d0b611913cdf4821761fcab6673470a33d178ec336d4d60d03fb9a072ed23e4f178a3eb0d8
+DIST scikit_image-0.25.2.tar.gz 22693594 BLAKE2B 238b44c120c53c10d98fc79c9ccb81770297a16156ba2d4d52cfa4731252aa205698caac384b8569c4b52ed2eb0e61500facff00c238a3212ecd7ba9b86db3da SHA512 8977585f7695d10df52d243d9fafdba2e04b5f4d4fe698dd9353bdffc4de21ad61053f55a46ed6350d5de8f1cd7dab969d45b85613a0e5fdb0b28a84c72551a9

diff --git a/dev-python/scikit-image/scikit-image-0.25.2.ebuild b/dev-python/scikit-image/scikit-image-0.25.2.ebuild
new file mode 100644
index 000000000000..d45f72935f71
--- /dev/null
+++ b/dev-python/scikit-image/scikit-image-0.25.2.ebuild
@@ -0,0 +1,96 @@
+# Copyright 1999-2025 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=meson-python
+DISTUTILS_EXT=1
+PYTHON_COMPAT=( python3_{10..13} )
+
+inherit distutils-r1 optfeature pypi
+
+TEST_DATA_COMMIT=15735b54e85c02427f07c71e6456723495034805
+DESCRIPTION="Image processing routines for SciPy"
+HOMEPAGE="
+	https://scikit-image.org/
+	https://github.com/scikit-image/scikit-image/
+	https://pypi.org/project/scikit-image/
+"
+SRC_URI+="
+	test? (
+		https://gitlab.com/scikit-image/data/-/archive/${TEST_DATA_COMMIT}/scikit-image-data-${TEST_DATA_COMMIT}.tar.bz2
+	)
+"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~x86"
+
+RDEPEND="
+	>=dev-python/imageio-2.36[${PYTHON_USEDEP}]
+	>=dev-python/lazy-loader-0.4[${PYTHON_USEDEP}]
+	>=dev-python/networkx-3.0[${PYTHON_USEDEP}]
+	>=dev-python/numpy-1.24[${PYTHON_USEDEP}]
+	>=dev-python/pillow-10.1[${PYTHON_USEDEP}]
+	>=dev-python/scipy-1.11.4[sparse(+),${PYTHON_USEDEP}]
+	>=dev-python/tifffile-2022.8.12[${PYTHON_USEDEP}]
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	>=dev-python/cython-3.0.4[${PYTHON_USEDEP}]
+	dev-python/packaging[${PYTHON_USEDEP}]
+	test? (
+		dev-python/pytest-localserver[${PYTHON_USEDEP}]
+	)
+"
+
+# xdist does not work with this test suite
+distutils_enable_tests pytest
+# There is a programmable error in your configuration file:
+#distutils_enable_sphinx doc/source dev-python/numpydoc dev-python/myst-parser
+
+src_test() {
+	# for some reason, upstream refetches data that's already in the tarball
+	# sigh
+	mkdir -p "${HOME}/.cache/scikit-image" || die
+	mv skimage "${HOME}/.cache/scikit-image/${PV/_/}" || die
+
+	# This is a true horror, sigh
+	local cache_dir=${HOME}/.cache/scikit-image/${PV/_/}/data
+	pushd "${WORKDIR}/data-${TEST_DATA_COMMIT}" >/dev/null || die
+	cp Tests_besides_Equalize_Otsu/add18_entropy/rank_filters_tests_3d.npz \
+		Tests_besides_Equalize_Otsu/gray_morph_output.npz \
+		brain.tiff cells3d.tif eagle.png \
+		"${cache_dir}/" || die
+	cp Normal_Epidermis_and_Dermis_with_Intradermal_Nevus_10x.JPG "${cache_dir}"/skin.jpg || die
+	cp pivchallenge/B/B001_1.tif "${cache_dir}"/pivchallenge-B-B001_1.tif || die
+	cp pivchallenge/B/B001_2.tif "${cache_dir}"/pivchallenge-B-B001_2.tif || die
+	cp kidney-tissue-fluorescence.tif "${cache_dir}"/kidney.tif || die
+	cp lily-of-the-valley-fluorescence.tif "${cache_dir}"/lily.tif || die
+	cp astronaut_rl.npy "${cache_dir}/../restoration/tests/" || die
+	popd > /dev/null || die
+
+	distutils-r1_src_test
+}
+
+python_test() {
+	local EPYTEST_DESELECT=(
+		# tests for downloading all data files, including these not needed
+		# by any actual tests
+		data/tests/test_data.py::test_download_all_with_pooch
+		# hangs? TODO
+		graph/tests/test_rag.py::test_reproducibility
+	)
+
+	local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
+	epytest --pyargs skimage -p localserver -o xfail_strict=False
+}
+
+pkg_postinst() {
+	optfeature "FITS io capability" dev-python/astropy
+	optfeature "GTK" dev-python/pygtk
+	optfeature "io plugin providing most standard formats" dev-python/imread
+	optfeature "plotting" dev-python/matplotlib
+	optfeature "wavelet transformations" dev-python/pywavelets
+	optfeature "io plugin providing a wide variety of formats, including specialized formats using in medical imaging." dev-python/simpleitk
+}


^ permalink raw reply related	[flat|nested] 13+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-python/scikit-image/
@ 2025-02-24  5:33 Sam James
  0 siblings, 0 replies; 13+ messages in thread
From: Sam James @ 2025-02-24  5:33 UTC (permalink / raw
  To: gentoo-commits

commit:     10bc9ad8cd57183689185b349382479a5da75762
Author:     Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Mon Feb 24 05:32:46 2025 +0000
Commit:     Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Mon Feb 24 05:32:46 2025 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=10bc9ad8

dev-python/scikit-image: add pythran dependency

Build-time only but needed in DEPEND and BDEPEND to build the generated code.

Closes: https://bugs.gentoo.org/913686
Signed-off-by: Sam James <sam <AT> gentoo.org>

 dev-python/scikit-image/scikit-image-0.25.0.ebuild | 8 ++++++--
 dev-python/scikit-image/scikit-image-0.25.1.ebuild | 6 +++++-
 dev-python/scikit-image/scikit-image-0.25.2.ebuild | 6 +++++-
 3 files changed, 16 insertions(+), 4 deletions(-)

diff --git a/dev-python/scikit-image/scikit-image-0.25.0.ebuild b/dev-python/scikit-image/scikit-image-0.25.0.ebuild
index d2280870fe81..9aea30cb89b2 100644
--- a/dev-python/scikit-image/scikit-image-0.25.0.ebuild
+++ b/dev-python/scikit-image/scikit-image-0.25.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2024 Gentoo Authors
+# Copyright 1999-2025 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
@@ -35,9 +35,13 @@ RDEPEND="
 	>=dev-python/scipy-1.11.2[sparse(+),${PYTHON_USEDEP}]
 	>=dev-python/tifffile-2022.8.12[${PYTHON_USEDEP}]
 "
-DEPEND="${RDEPEND}"
+DEPEND="
+	${RDEPEND}
+	dev-python/pythran[${PYTHON_USEDEP}]
+"
 BDEPEND="
 	>=dev-python/cython-3.0.4[${PYTHON_USEDEP}]
+	dev-python/pythran[${PYTHON_USEDEP}]
 	dev-python/packaging[${PYTHON_USEDEP}]
 	test? (
 		dev-python/pytest-localserver[${PYTHON_USEDEP}]

diff --git a/dev-python/scikit-image/scikit-image-0.25.1.ebuild b/dev-python/scikit-image/scikit-image-0.25.1.ebuild
index 385fcfede7ab..0682d58604e2 100644
--- a/dev-python/scikit-image/scikit-image-0.25.1.ebuild
+++ b/dev-python/scikit-image/scikit-image-0.25.1.ebuild
@@ -35,10 +35,14 @@ RDEPEND="
 	>=dev-python/scipy-1.11.2[sparse(+),${PYTHON_USEDEP}]
 	>=dev-python/tifffile-2022.8.12[${PYTHON_USEDEP}]
 "
-DEPEND="${RDEPEND}"
+DEPEND="
+	${RDEPEND}
+	dev-python/pythran[${PYTHON_USEDEP}]
+"
 BDEPEND="
 	>=dev-python/cython-3.0.4[${PYTHON_USEDEP}]
 	dev-python/packaging[${PYTHON_USEDEP}]
+	dev-python/pythran[${PYTHON_USEDEP}]
 	test? (
 		dev-python/pytest-localserver[${PYTHON_USEDEP}]
 	)

diff --git a/dev-python/scikit-image/scikit-image-0.25.2.ebuild b/dev-python/scikit-image/scikit-image-0.25.2.ebuild
index d45f72935f71..00de952910d8 100644
--- a/dev-python/scikit-image/scikit-image-0.25.2.ebuild
+++ b/dev-python/scikit-image/scikit-image-0.25.2.ebuild
@@ -35,10 +35,14 @@ RDEPEND="
 	>=dev-python/scipy-1.11.4[sparse(+),${PYTHON_USEDEP}]
 	>=dev-python/tifffile-2022.8.12[${PYTHON_USEDEP}]
 "
-DEPEND="${RDEPEND}"
+DEPEND="
+	${RDEPEND}
+	dev-python/pythran[${PYTHON_USEDEP}]
+"
 BDEPEND="
 	>=dev-python/cython-3.0.4[${PYTHON_USEDEP}]
 	dev-python/packaging[${PYTHON_USEDEP}]
+	dev-python/pythran[${PYTHON_USEDEP}]
 	test? (
 		dev-python/pytest-localserver[${PYTHON_USEDEP}]
 	)


^ permalink raw reply related	[flat|nested] 13+ messages in thread
end of thread, other threads:[~2025-02-24  5:33 UTC | newest]

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2025-02-24  5:33 Sam James
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