From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (2048 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id B0050158041 for ; Thu, 21 Mar 2024 22:15:52 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id C06ECE29F7; Thu, 21 Mar 2024 22:15:51 +0000 (UTC) Received: from smtp.gentoo.org (mail.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id A2EBDE29F7 for ; Thu, 21 Mar 2024 22:15:51 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id EC6A3335CB4 for ; Thu, 21 Mar 2024 22:15:50 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 6158715BD for ; Thu, 21 Mar 2024 22:15:48 +0000 (UTC) From: "Horea Christian" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Horea Christian" Message-ID: <1711059329.597997e35db5451deb6079df099686bc085b732a.chymera@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/neuroconv/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/neuroconv/neuroconv-0.2.4.ebuild sci-biology/neuroconv/neuroconv-0.4.6-r1.ebuild sci-biology/neuroconv/neuroconv-0.4.8.ebuild X-VCS-Directories: sci-biology/neuroconv/ X-VCS-Committer: chymera X-VCS-Committer-Name: Horea Christian X-VCS-Revision: 597997e35db5451deb6079df099686bc085b732a X-VCS-Branch: master Date: Thu, 21 Mar 2024 22:15:48 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: b0f4ccc9-d15e-4a37-ab37-a9aa09b33239 X-Archives-Hash: 1f350448e4968fb10f96c15e43e9827d commit: 597997e35db5451deb6079df099686bc085b732a Author: Horea Christian chymera eu> AuthorDate: Thu Mar 21 22:10:03 2024 +0000 Commit: Horea Christian gmail com> CommitDate: Thu Mar 21 22:15:29 2024 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=597997e3 sci-biology/neuroconv: version bump, treeclean Signed-off-by: Horea Christian chymera.eu> sci-biology/neuroconv/neuroconv-0.2.4.ebuild | 56 ---------------------- ...conv-0.4.6-r1.ebuild => neuroconv-0.4.8.ebuild} | 6 +++ 2 files changed, 6 insertions(+), 56 deletions(-) diff --git a/sci-biology/neuroconv/neuroconv-0.2.4.ebuild b/sci-biology/neuroconv/neuroconv-0.2.4.ebuild deleted file mode 100644 index c554ce791..000000000 --- a/sci-biology/neuroconv/neuroconv-0.2.4.ebuild +++ /dev/null @@ -1,56 +0,0 @@ -# Copyright 2021-2023 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{10..11} ) -DISTUTILS_USE_PEP517=setuptools -inherit distutils-r1 - -DESCRIPTION="Create NWB files from proprietary formats." -HOMEPAGE="https://github.com/catalystneuro/neuroconv" -SRC_URI="https://github.com/catalystneuro/neuroconv/archive/refs/tags/v${PV}.tar.gz -> ${P}.gh.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64" -IUSE="+ecephys +icephys +ophys" - -RDEPEND=" - dev-python/h5py[${PYTHON_USEDEP}] - dev-python/hdmf[${PYTHON_USEDEP}] - dev-python/jsonschema[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/pandas[${PYTHON_USEDEP}] - dev-python/psutil[${PYTHON_USEDEP}] - dev-python/pynwb[${PYTHON_USEDEP}] - dev-python/pyyaml[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - dev-python/tqdm[${PYTHON_USEDEP}] - dev-vcs/dandi-cli[${PYTHON_USEDEP}] - ecephys? ( - dev-python/spikeinterface[${PYTHON_USEDEP}] - ) - icephys? ( - dev-python/neo[${PYTHON_USEDEP}] - ) - ophys? ( - sci-biology/roiextractors[${PYTHON_USEDEP}] - ) -" -BDEPEND=" - test? ( - dev-python/parameterized[${PYTHON_USEDEP}] - ) -" - -distutils_enable_tests pytest - -python_test() { - # Additional tests require complex data getting infrastructure, ophys tests still have issues: - # https://github.com/catalystneuro/neuroconv/issues/305 - local my_tests=( "tests/test_minimal" ) - use ecephys && my_tests+=( "tests/test_ecephys" ) - #use ophys && my_tests+=( "tests/test_ophys" ) - epytest ${my_tests[*]// /|} -} diff --git a/sci-biology/neuroconv/neuroconv-0.4.6-r1.ebuild b/sci-biology/neuroconv/neuroconv-0.4.8.ebuild similarity index 88% rename from sci-biology/neuroconv/neuroconv-0.4.6-r1.ebuild rename to sci-biology/neuroconv/neuroconv-0.4.8.ebuild index 1676aa6b7..a3012611f 100644 --- a/sci-biology/neuroconv/neuroconv-0.4.6-r1.ebuild +++ b/sci-biology/neuroconv/neuroconv-0.4.8.ebuild @@ -49,6 +49,12 @@ BDEPEND=" distutils_enable_tests pytest +# Reported upstream: +# https://github.com/catalystneuro/neuroconv/issues/785 +EPYTEST_DESELECT=( + tests/test_ecephys/test_mock_recording_interface.py::TestMockRecordingInterface::test_conversion_as_lone_interface +) + python_test() { # Additional tests require complex data getting infrastructure, ophys tests still have issues: # https://github.com/catalystneuro/neuroconv/issues/305