* [gentoo-commits] proj/sci:master commit in: sci-biology/multiqc/
@ 2024-01-30 14:05 Andrew Ammerlaan
0 siblings, 0 replies; 3+ messages in thread
From: Andrew Ammerlaan @ 2024-01-30 14:05 UTC (permalink / raw
To: gentoo-commits
commit: 5f2709bb2dee51ca95791f91c71aee2f7711d593
Author: Michael Schubert <mschu.dev <AT> gmail <DOT> com>
AuthorDate: Mon Jan 29 21:51:25 2024 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue Jan 30 14:01:32 2024 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=5f2709bb
sci-biology/multiqc: add ebuild
Signed-off-by: Michael Schubert <mschu.dev <AT> gmail.com>
Closes: https://github.com/gentoo/sci/pull/1223
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/multiqc/metadata.xml | 12 ++++++++++
sci-biology/multiqc/multiqc-1.19.ebuild | 40 +++++++++++++++++++++++++++++++++
2 files changed, 52 insertions(+)
diff --git a/sci-biology/multiqc/metadata.xml b/sci-biology/multiqc/metadata.xml
new file mode 100644
index 000000000..09bd2b6e6
--- /dev/null
+++ b/sci-biology/multiqc/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="person">
+ <email>mschu.dev@gmail.com</email>
+ <name>Michael Schubert</name>
+ </maintainer>
+ <upstream>
+ <remote-id type="github">ewels/MultiQC</remote-id>
+ <remote-id type="pypi">multiqc</remote-id>
+ </upstream>
+</pkgmetadata>
diff --git a/sci-biology/multiqc/multiqc-1.19.ebuild b/sci-biology/multiqc/multiqc-1.19.ebuild
new file mode 100644
index 000000000..187f06c22
--- /dev/null
+++ b/sci-biology/multiqc/multiqc-1.19.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=setuptools
+PYTHON_COMPAT=( python3_{10..11} )
+
+inherit pypi distutils-r1
+
+DESCRIPTION="Aggregate bioinformatics results across many samples into a single report"
+HOMEPAGE="https://multiqc.info/"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~amd64-linux"
+
+RDEPEND="dev-python/matplotlib[${PYTHON_USEDEP}]
+ dev-python/networkx[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/click[${PYTHON_USEDEP}]
+ dev-python/coloredlogs[${PYTHON_USEDEP}]
+ dev-python/future[${PYTHON_USEDEP}]
+ dev-python/jinja[${PYTHON_USEDEP}]
+ dev-python/lzstring[${PYTHON_USEDEP}]
+ dev-python/markdown[${PYTHON_USEDEP}]
+ dev-python/packaging[${PYTHON_USEDEP}]
+ dev-python/pyyaml[${PYTHON_USEDEP}]
+ dev-python/requests[${PYTHON_USEDEP}]
+ dev-python/rich[${PYTHON_USEDEP}]
+ dev-python/rich-click[${PYTHON_USEDEP}]
+ dev-python/simplejson[${PYTHON_USEDEP}]
+ dev-python/spectra[${PYTHON_USEDEP}]
+ dev-python/importlib-metadata[$PYTHON_USEDEP]
+ dev-python/humanize[$PYTHON_USEDEP]
+ dev-python/pyaml-env[$PYTHON_USEDEP]"
+
+# pypi tarball does not include tests
+RESTRICT="test"
+#distutils_enable_tests pytest
^ permalink raw reply related [flat|nested] 3+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/multiqc/
@ 2024-07-11 12:27 Andrew Ammerlaan
0 siblings, 0 replies; 3+ messages in thread
From: Andrew Ammerlaan @ 2024-07-11 12:27 UTC (permalink / raw
To: gentoo-commits
commit: 0ea7c54fa7b6fb141a59c0653e88113290982bea
Author: Michael Schubert <mschu.dev <AT> gmail <DOT> com>
AuthorDate: Mon Jul 8 19:57:09 2024 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Thu Jul 11 12:17:05 2024 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0ea7c54f
sci-biology/multiqc: version bump 1.23
Signed-off-by: Michael Schubert <mschu.dev <AT> gmail.com>
Closes: https://github.com/gentoo/sci/pull/1281
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/multiqc/{multiqc-1.22.2.ebuild => multiqc-1.23.ebuild} | 0
1 file changed, 0 insertions(+), 0 deletions(-)
diff --git a/sci-biology/multiqc/multiqc-1.22.2.ebuild b/sci-biology/multiqc/multiqc-1.23.ebuild
similarity index 100%
rename from sci-biology/multiqc/multiqc-1.22.2.ebuild
rename to sci-biology/multiqc/multiqc-1.23.ebuild
^ permalink raw reply [flat|nested] 3+ messages in thread* [gentoo-commits] proj/sci:master commit in: sci-biology/multiqc/
@ 2025-02-06 13:02 Nowa Ammerlaan
0 siblings, 0 replies; 3+ messages in thread
From: Nowa Ammerlaan @ 2025-02-06 13:02 UTC (permalink / raw
To: gentoo-commits
commit: 2733f909f2b80f8690363ab7973e487d4953c2dd
Author: Michael Schubert <mschu.dev <AT> gmail <DOT> com>
AuthorDate: Fri Jan 31 20:40:11 2025 +0000
Commit: Nowa Ammerlaan <nowa <AT> gentoo <DOT> org>
CommitDate: Thu Feb 6 12:52:52 2025 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=2733f909
sci-biology/multiqc: version bump 1.27
Signed-off-by: Michael Schubert <mschu.dev <AT> gmail.com>
Closes: https://github.com/gentoo/sci/pull/1320
Signed-off-by: Nowa Ammerlaan <nowa <AT> gentoo.org>
.../{multiqc-1.23.ebuild => multiqc-1.27.ebuild} | 19 +++++++++++--------
1 file changed, 11 insertions(+), 8 deletions(-)
diff --git a/sci-biology/multiqc/multiqc-1.23.ebuild b/sci-biology/multiqc/multiqc-1.27.ebuild
similarity index 67%
rename from sci-biology/multiqc/multiqc-1.23.ebuild
rename to sci-biology/multiqc/multiqc-1.27.ebuild
index 2ac362503..6ba06e001 100644
--- a/sci-biology/multiqc/multiqc-1.23.ebuild
+++ b/sci-biology/multiqc/multiqc-1.27.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2024 Gentoo Authors
+# Copyright 1999-2025 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
@@ -10,12 +10,12 @@ inherit distutils-r1
DESCRIPTION="Aggregate bioinformatics results across many samples into a single report"
HOMEPAGE="https://multiqc.info/"
-SRC_URI="https://github.com/MultiQC/MultiQC/archive/refs/tags/v${PV}.tar.gz -> ${P}.gh.tar.gz"
+SRC_URI="https://github.com/MultiQC/MultiQC/archive/v${PV}.tar.gz -> ${P}.gh.tar.gz"
S="${WORKDIR}"/MultiQC-${PV}
LICENSE="GPL-3"
SLOT="0"
-KEYWORDS="~amd64 ~amd64-linux"
+KEYWORDS="~amd64"
RDEPEND="dev-python/click[${PYTHON_USEDEP}]
dev-python/humanize[${PYTHON_USEDEP}]
@@ -28,15 +28,18 @@ RDEPEND="dev-python/click[${PYTHON_USEDEP}]
>=dev-python/pillow-10[${PYTHON_USEDEP}]
>=dev-python/plotly-5.18[${PYTHON_USEDEP}]
>=dev-python/pyyaml-4[${PYTHON_USEDEP}]
- dev-python/pyaml-env[${PYTHON_USEDEP}]
>=dev-python/rich-10[${PYTHON_USEDEP}]
dev-python/rich-click[${PYTHON_USEDEP}]
dev-python/coloredlogs[${PYTHON_USEDEP}]
dev-python/tqdm[${PYTHON_USEDEP}]
>=dev-python/spectra-0.0.10[${PYTHON_USEDEP}]
>=dev-python/pydantic-2.7.1[${PYTHON_USEDEP}]
- dev-python/typeguard[${PYTHON_USEDEP}]"
-# dev-python/kaleido[${PYTHON_USEDEP}] # tested and is optional
+ dev-python/typeguard[${PYTHON_USEDEP}]
+ dev-python/python-dotenv[${PYTHON_USEDEP}]
+ dev-python/natsort[${PYTHON_USEDEP}]
+ dev-python/tqdm[${PYTHON_USEDEP}]"
+# dev-python/tiktoken[${PYTHON_USEDEP}] # not strictly required
+# dev-python/kaleido[${PYTHON_USEDEP}] # not strictly required
-RESTRICT="test" # no items collected
-#distutils_enable_tests pytest
+RESTRICT="test" # needs external repository with test data
+distutils_enable_tests pytest
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