[gentoo-commits] repo/gentoo:master commit in: dev-python/pandas/

["Michał Górny" <mgorny@gentoo.org>]

commit:     4e04f5e7448def9d42913a552abb3f2e7ef05dc4
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Sat Jan 20 12:55:23 2024 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Sat Jan 20 15:16:55 2024 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4e04f5e7

dev-python/pandas: Add proper pyarrow test deps

Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 dev-python/pandas/pandas-2.2.0-r1.ebuild | 206 +++++++++++++++++++++++++++++++
 1 file changed, 206 insertions(+)

diff --git a/dev-python/pandas/pandas-2.2.0-r1.ebuild b/dev-python/pandas/pandas-2.2.0-r1.ebuild
new file mode 100644
index 000000000000..2d11e1621214
--- /dev/null
+++ b/dev-python/pandas/pandas-2.2.0-r1.ebuild
@@ -0,0 +1,206 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_EXT=1
+DISTUTILS_USE_PEP517=meson-python
+PYTHON_COMPAT=( python3_{10..12} )
+PYTHON_REQ_USE="threads(+)"
+
+VIRTUALX_REQUIRED="manual"
+
+inherit distutils-r1 optfeature pypi virtualx
+
+DESCRIPTION="Powerful data structures for data analysis and statistics"
+HOMEPAGE="
+	https://pandas.pydata.org/
+	https://github.com/pandas-dev/pandas/
+	https://pypi.org/project/pandas/
+"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64"
+IUSE="full-support minimal test X"
+RESTRICT="!test? ( test )"
+
+RECOMMENDED_DEPEND="
+	>=dev-python/bottleneck-1.3.4[${PYTHON_USEDEP}]
+	>=dev-python/numexpr-2.8.0[${PYTHON_USEDEP}]
+"
+
+# TODO: add pandas-gbq to the tree
+# TODO: Re-add dev-python/statsmodel[python3_11] dep once it supports python3_11
+# https://github.com/statsmodels/statsmodels/issues/8287
+OPTIONAL_DEPEND="
+	>=dev-python/beautifulsoup4-4.11.1[${PYTHON_USEDEP}]
+	dev-python/blosc[${PYTHON_USEDEP}]
+	>=dev-python/html5lib-1.1[${PYTHON_USEDEP}]
+	>=dev-python/jinja-3.1.2[${PYTHON_USEDEP}]
+	>=dev-python/lxml-4.8.0[${PYTHON_USEDEP}]
+	>=dev-python/matplotlib-3.6.1[${PYTHON_USEDEP}]
+	>=dev-python/openpyxl-3.0.7[${PYTHON_USEDEP}]
+	>=dev-python/sqlalchemy-1.4.36[${PYTHON_USEDEP}]
+	>=dev-python/tables-3.7.0[${PYTHON_USEDEP}]
+	>=dev-python/tabulate-0.8.10[${PYTHON_USEDEP}]
+	>=dev-python/xarray-2022.3.0[${PYTHON_USEDEP}]
+	>=dev-python/xlrd-2.0.1[${PYTHON_USEDEP}]
+	>=dev-python/xlsxwriter-3.0.3[${PYTHON_USEDEP}]
+	>=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}]
+	!x86? ( !hppa? (
+		$(python_gen_cond_dep '
+			dev-python/statsmodels[${PYTHON_USEDEP}]
+		' python3_{8..10} )
+		>=dev-python/scipy-1.8.1[${PYTHON_USEDEP}]
+	) )
+	X? (
+		|| (
+			>=dev-python/PyQt5-5.15.6[${PYTHON_USEDEP}]
+			>=dev-python/QtPy-2.2.0[${PYTHON_USEDEP}]
+			x11-misc/xclip
+			x11-misc/xsel
+		)
+	)
+"
+DEPEND="
+	>=dev-python/numpy-1.23.2[${PYTHON_USEDEP}]
+"
+COMMON_DEPEND="
+	${DEPEND}
+	>=dev-python/python-dateutil-2.8.2[${PYTHON_USEDEP}]
+	>=dev-python/pytz-2020.1[${PYTHON_USEDEP}]
+"
+BDEPEND="
+	${COMMON_DEPEND}
+	>=dev-build/meson-1.2.1
+	>=dev-python/cython-0.29.33[${PYTHON_USEDEP}]
+	>=dev-python/versioneer-0.28[${PYTHON_USEDEP}]
+	test? (
+		${VIRTUALX_DEPEND}
+		${RECOMMENDED_DEPEND}
+		${OPTIONAL_DEPEND}
+		dev-libs/apache-arrow[brotli,parquet,snappy]
+		>=dev-python/beautifulsoup4-4.11.1[${PYTHON_USEDEP}]
+		>=dev-python/hypothesis-6.46.1[${PYTHON_USEDEP}]
+		>=dev-python/openpyxl-3.0.10[${PYTHON_USEDEP}]
+		dev-python/pyarrow[parquet,${PYTHON_USEDEP}]
+		>=dev-python/pymysql-1.0.2[${PYTHON_USEDEP}]
+		>=dev-python/xlsxwriter-3.0.3[${PYTHON_USEDEP}]
+		x11-misc/xclip
+		x11-misc/xsel
+	)
+"
+RDEPEND="
+	${COMMON_DEPEND}
+	dev-python/tzdata[${PYTHON_USEDEP}]
+	!minimal? ( ${RECOMMENDED_DEPEND} )
+	full-support? ( ${OPTIONAL_DEPEND} )
+"
+
+EPYTEST_XDIST=1
+distutils_enable_tests pytest
+
+src_test() {
+	virtx distutils-r1_src_test
+}
+
+python_test() {
+	local EPYTEST_DESELECT=(
+		# test for rounding errors, fails if we have better precision
+		# e.g. on amd64 with FMA or on arm64
+		# https://github.com/pandas-dev/pandas/issues/38921
+		tests/window/test_rolling.py::test_rolling_var_numerical_issues
+
+		# TODO; unhappy about DISPLAY?
+		tests/test_downstream.py::test_seaborn
+
+		# OOMs
+		tests/io/parser/test_c_parser_only.py::test_bytes_exceed_2gb
+
+		# TODO: numexpr says "forbidden control characters"
+		tests/computation/test_eval.py::TestOperations::test_multi_line_expression_local_variable
+		'tests/computation/test_eval.py::test_query_token[numexpr-Temp(\xb0C)]'
+		tests/frame/test_query_eval.py::TestDataFrameQueryBacktickQuoting::test_lots_of_operators_string
+		tests/frame/test_query_eval.py::TestDataFrameQueryBacktickQuoting::test_multiple_spaces
+		tests/frame/test_query_eval.py::TestDataFrameQueryBacktickQuoting::test_parenthesis
+		tests/frame/test_query_eval.py::TestDataFrameQueryBacktickQuoting::test_start_with_spaces
+		tests/frame/test_query_eval.py::TestDataFrameQueryNumExprPandas::test_local_syntax
+		tests/frame/test_query_eval.py::TestDataFrameQueryNumExprPandas::test_local_variable_with_in
+		tests/frame/test_query_eval.py::TestDataFrameQueryNumExprPandas::test_nested_scope
+		tests/frame/test_query_eval.py::TestDataFrameQueryNumExprPandas::test_query_scope
+
+		# TODO: missing data not covered by --no-strict-data-files?
+		tests/io/xml/test_xml.py::test_empty_stylesheet
+		tests/io/xml/test_xml.py::test_wrong_file_path
+
+		# TODO
+		tests/frame/test_arithmetic.py::TestFrameFlexArithmetic::test_floordiv_axis0_numexpr_path
+
+		# deprecation warning
+		tests/io/pytables/test_retain_attributes.py::test_retain_index_attributes2
+		'tests/computation/test_eval.py::TestEval::test_scalar_unary[numexpr-pandas]'
+
+		# Needs 64-bit time_t (TODO: split into 32-bit arch only section)
+		tests/tseries/offsets/test_year.py::test_add_out_of_pydatetime_range
+		'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessDay]'
+		'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessHour]'
+		'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessMonthEnd]'
+		'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessMonthBegin]'
+		'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BQuarterEnd]'
+		'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BQuarterBegin]'
+		'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessDay]'
+		'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessHour]'
+		'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessMonthEnd]'
+		'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessMonthBegin]'
+		'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-MonthEnd]'
+		'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-MonthBegin]'
+		'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-SemiMonthBegin]'
+		'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-SemiMonthEnd]'
+		'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-QuarterEnd]'
+		'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-LastWeekOfMonth]'
+		'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-WeekOfMonth]'
+		'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-Week]'
+
+		# hdf / pytables have alignment problems: bug #911660
+		# https://github.com/pandas-dev/pandas/issues/54396
+		tests/io/pytables/test_append.py::test_append_frame_column_oriented
+		tests/io/pytables/test_store.py::test_select_filter_corner
+
+		# blosc2 version
+		tests/io/pytables/test_file_handling.py::test_complibs\[blosc2-{1..9}\]
+
+		# requires -Werror
+		tests/tslibs/test_to_offset.py::test_to_offset_lowercase_frequency_deprecated
+		tests/tslibs/test_to_offset.py::test_to_offset_uppercase_frequency_deprecated
+	)
+
+	local -x LC_ALL=C.UTF-8
+	cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
+	"${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
+	# --no-strict-data-files is necessary since upstream prevents data
+	# files from even being included in GitHub archives, sigh
+	# https://github.com/pandas-dev/pandas/issues/54907
+	local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
+	epytest pandas/tests \
+		--no-strict-data-files \
+		-m "not single_cpu and not slow and not network and not db" ||
+		die "Tests failed with ${EPYTHON}"
+	rm test-data.xml test_stata.dta || die
+}
+
+pkg_postinst() {
+	optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
+	optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1"
+	optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml
+	optfeature "for msgpack compression using blosc" dev-python/blosc
+	optfeature "Template engine for conditional HTML formatting" dev-python/jinja
+	optfeature "Plotting support" dev-python/matplotlib
+	optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.10" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
+	optfeature "necessary for HDF5-based storage" ">=dev-python/tables-3.7.0"
+	optfeature "R I/O support" dev-python/rpy
+	optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
+	optfeature "SQL database support" ">=dev-python/sqlalchemy-1.4.36"
+	optfeature "miscellaneous statistical functions" dev-python/scipy
+	optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/QtPy dev-python/pygtk x11-misc/xclip x11-misc/xsel
+}