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* [gentoo-commits] repo/proj/guru:dev commit in: sci-biology/cmdock/, sci-biology/cmdock/files/
@ 2024-01-09 10:19 Anna Vyalkova
  0 siblings, 0 replies; 8+ messages in thread
From: Anna Vyalkova @ 2024-01-09 10:19 UTC (permalink / raw
  To: gentoo-commits

commit:     bf5dd7c748cd41b6fa540780d668045d1836db0b
Author:     Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
AuthorDate: Tue Jan  9 10:19:33 2024 +0000
Commit:     Anna Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
CommitDate: Tue Jan  9 10:19:50 2024 +0000
URL:        https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=bf5dd7c7

sci-biology/cmdock: fix build

Closes: https://bugs.gentoo.org/901345
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq.in>

 sci-biology/cmdock/cmdock-0.2.0-r1.ebuild          | 119 ++++++++++++++++++++
 .../cmdock/files/cmdock-0.2.0-cxxopts.patch        | 122 +++++++++++++++++++++
 .../cmdock/files/cmdock-0.2.0-include.patch        |  19 ++++
 3 files changed, 260 insertions(+)

diff --git a/sci-biology/cmdock/cmdock-0.2.0-r1.ebuild b/sci-biology/cmdock/cmdock-0.2.0-r1.ebuild
new file mode 100644
index 0000000000..e01a7ecf70
--- /dev/null
+++ b/sci-biology/cmdock/cmdock-0.2.0-r1.ebuild
@@ -0,0 +1,119 @@
+# Copyright 2021-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..12} )
+BOINC_APP_OPTIONAL="true"
+inherit boinc-app flag-o-matic meson optfeature python-any-r1
+
+DESCRIPTION="Program for docking ligands to proteins and nucleic acids"
+HOMEPAGE="https://gitlab.com/Jukic/cmdock"
+SRC_URI="https://gitlab.com/Jukic/${PN}/-/archive/v${PV}/${PN}-v${PV}.tar.bz2"
+S="${WORKDIR}/${PN}-v${PV}"
+
+LICENSE="LGPL-3 ZLIB"
+SLOT="0/${PV}"
+KEYWORDS="~amd64"
+IUSE="apidoc boinc cpu_flags_x86_sse2 doc test"
+
+# Flaky tests
+RESTRICT="test"
+
+RDEPEND="
+	boinc? ( sci-misc/boinc-wrapper )
+"
+DEPEND="
+	dev-cpp/eigen:3
+	>=dev-cpp/indicators-2.3-r1
+	>=dev-cpp/pcg-cpp-0.98.1_p20210406-r1
+	>=dev-libs/cxxopts-3
+"
+BDEPEND="
+	apidoc? (
+		app-doc/doxygen
+		dev-texlive/texlive-fontutils
+	)
+	doc? (
+		$(python_gen_any_dep '
+			dev-python/insipid-sphinx-theme[${PYTHON_USEDEP}]
+			dev-python/sphinx[${PYTHON_USEDEP}]
+		')
+	)
+	test? ( ${PYTHON_DEPS} )
+"
+
+PATCHES=(
+	"${FILESDIR}"/${P}-include.patch
+	"${FILESDIR}"/${P}-cxxopts.patch
+)
+
+DOCS=( README.md changelog.md )
+
+BOINC_MASTER_URL="https://www.sidock.si/sidock/"
+BOINC_INVITATION_CODE="Crunch_4Science"
+BOINC_APP_HELPTEXT=\
+"The easiest way to do something useful with this application
+is to attach it to SiDock@home BOINC project."
+
+INSTALL_PREFIX="${EPREFIX}/opt/${P}"
+
+python_check_deps() {
+	use doc || return 0
+
+	python_has_version "dev-python/sphinx[${PYTHON_USEDEP}]" &&
+	python_has_version "dev-python/insipid-sphinx-theme[${PYTHON_USEDEP}]"
+}
+
+foreach_wrapper_job() {
+	sed -e "s:@PREFIX@:${INSTALL_PREFIX}:g" -i "${1}" || die
+}
+
+src_prepare() {
+	default
+	python_fix_shebang "${S}"/bin
+}
+
+src_configure() {
+	# very weird directory layout
+	local emesonargs=(
+		--prefix="${INSTALL_PREFIX}"
+		$(meson_use apidoc)
+		$(meson_use doc)
+		$(meson_use test tests)
+		-Ddocdir="${EPREFIX}"/usr/share/doc/${PF}
+	)
+	meson_src_configure
+
+	use cpu_flags_x86_sse2 || append-cppflags "-DBUNDLE_NO_SSE"
+}
+
+src_install() {
+	meson_src_install
+	python_optimize "${D}${INSTALL_PREFIX}"/bin
+
+	if use boinc; then
+		doappinfo "${FILESDIR}"/app_info_${PV}.xml
+		dowrapper cmdock-l
+
+		# install cmdock executable
+		exeinto "$(get_project_root)"
+		exeopts --owner root --group boinc
+		newexe "${D}${INSTALL_PREFIX}"/bin/cmdock cmdock-${PV}
+
+		# install a blank file
+		touch "${T}"/docking_out || die
+		insinto "$(get_project_root)"
+		insopts --owner root --group boinc
+		doins "${T}"/docking_out
+	fi
+}
+
+pkg_postinst() {
+	optfeature "sdtether.py and sdrmsd.py scripts" "dev-python/numpy sci-chemistry/openbabel[python]"
+	use boinc && boinc-app_pkg_postinst
+}
+
+pkg_postrm() {
+	use boinc && boinc-app_pkg_postrm
+}

diff --git a/sci-biology/cmdock/files/cmdock-0.2.0-cxxopts.patch b/sci-biology/cmdock/files/cmdock-0.2.0-cxxopts.patch
new file mode 100644
index 0000000000..4d7f227957
--- /dev/null
+++ b/sci-biology/cmdock/files/cmdock-0.2.0-cxxopts.patch
@@ -0,0 +1,122 @@
+Update to cxxopts 3.0
+
+--- a/meson.build
++++ b/meson.build
+@@ -40,7 +40,7 @@ if cpp_compiler.get_id() == 'msvc'
+   message('Applying workaround for MSVC by adding flag /Zc:twoPhase-: https://stackoverflow.com/questions/56782470/why-do-i-have-warning-c4199-two-phase-name-lookup-is-not-supported-for-c-cli')
+ endif
+ 
+-cxxopts_dep = dependency('cxxopts', fallback : ['cxxopts', 'cxxopts_dep'])
++cxxopts_dep = dependency('cxxopts', version : '>=3.0', fallback : ['cxxopts', 'cxxopts_dep'])
+ eigen3_dep = dependency('eigen3', fallback : ['eigen', 'eigen_dep'])
+ openmp_dep = dependency('openmp', required : false)
+ 
+diff --git a/src/exe/cmcavity.cxx b/src/exe/cmcavity.cxx
+index 427d3c0..3a5c747 100644
+--- a/src/exe/cmcavity.cxx
++++ b/src/exe/cmcavity.cxx
+@@ -41,7 +41,7 @@ void PrintHeaderAddon(std::ostream &outputStream) {
+ // MAIN PROGRAM STARTS HERE
+ /////////////////////////////////////////////////////////////////////
+ 
+-int main(int argc, char *argv[]) {
++int main(const int argc, const char *argv[]) {
+   // Handle obsolete arguments, if any
+   for (int i = 0; i < argc; i++) {
+     std::string opt = argv[i];
+@@ -451,7 +451,7 @@ int main(int argc, char *argv[]) {
+ 
+       logFile.close();
+     }
+-  } catch (const cxxopts::OptionException &e) {
++  } catch (const cxxopts::exceptions::exception &e) {
+     std::cout << "Error parsing options: " << e.what() << std::endl;
+     return 1;
+   } catch (RbtError &e) {
+@@ -463,4 +463,4 @@ int main(int argc, char *argv[]) {
+   _RBTOBJECTCOUNTER_DUMP_(std::cout)
+ 
+   return 0;
+-}
+\ No newline at end of file
++}
+diff --git a/src/exe/cmdock.cxx b/src/exe/cmdock.cxx
+index 10e18ca..86bbff1 100644
+--- a/src/exe/cmdock.cxx
++++ b/src/exe/cmdock.cxx
+@@ -80,7 +80,7 @@ void printHelpFooter() {
+ // MAIN PROGRAM STARTS HERE
+ /////////////////////////////////////////////////////////////////////
+ 
+-int main(int argc, char *argv[]) {
++int main(const int argc, const char *argv[]) {
+   // Handle premature termination
+   signal (SIGINT, terminator);
+   
+@@ -941,7 +941,7 @@ int main(int argc, char *argv[]) {
+     log << "Thank you for using " << Rbt::GetProgramName() << " "
+               << Rbt::GetVersion() << "." << std::endl;
+     logFile.close();
+-  } catch (const cxxopts::OptionException &e) {
++  } catch (const cxxopts::exceptions::exception &e) {
+     std::cout << "Error parsing options: " << e.what() << std::endl;
+     return 1;
+   } catch (RbtError &e) {
+@@ -953,4 +953,4 @@ int main(int argc, char *argv[]) {
+   _RBTOBJECTCOUNTER_DUMP_(std::cout)
+ 
+   return 0;
+-}
+\ No newline at end of file
++}
+diff --git a/src/exe/cmmoegrid.cxx b/src/exe/cmmoegrid.cxx
+index 4bff8f3..bf74b52 100644
+--- a/src/exe/cmmoegrid.cxx
++++ b/src/exe/cmmoegrid.cxx
+@@ -57,7 +57,7 @@ RbtModelList CreateProbes(std::string anAtomTypeStr) {
+ // MAIN PROGRAM STARTS HERE
+ /////////////////////////////////////////////////////////////////////
+ 
+-int main(int argc, char *argv[]) {
++int main(const int argc, const char *argv[]) {
+   std::cout.setf(std::ios_base::left, std::ios_base::adjustfield);
+ 
+   // Strip off the path to the executable, leaving just the file name
+@@ -268,7 +268,7 @@ int main(int argc, char *argv[]) {
+       }
+       std::cout << "done." << std::endl;
+     }
+-  } catch (const cxxopts::OptionException &e) {
++  } catch (const cxxopts::exceptions::exception &e) {
+     std::cout << "Error parsing options: " << e.what() << std::endl;
+     return 1;
+   } catch (RbtError &e) {
+diff --git a/src/exe/cmzip.cxx b/src/exe/cmzip.cxx
+index 1d1f69a..043d7be 100644
+--- a/src/exe/cmzip.cxx
++++ b/src/exe/cmzip.cxx
+@@ -504,7 +504,7 @@ void rescue(cxxopts::ParseResult result){
+ }
+ 
+ // ENTRY POINT
+-int main(int argc, char *argv[]) {
++int main(const int argc, const char *argv[]) {
+   // Handle premature termination
+   signal (SIGINT, terminator);
+ 
+@@ -580,7 +580,7 @@ Use this if CmDock terminates prematurely. CmZIP will search for records in the
+       return 0;
+     }
+ 
+-  } catch (const cxxopts::OptionException &e) {
++  } catch (const cxxopts::exceptions::exception &e) {
+     std::cout << "Error parsing options: " << e.what() << std::endl;
+     return 1;
+   } catch (const std::exception &exc) {
+@@ -589,4 +589,4 @@ Use this if CmDock terminates prematurely. CmZIP will search for records in the
+   /*} catch (...) {
+       std::cout << "Unknown exception" << std::endl;
+   }*/
+-}
+\ No newline at end of file
++}

diff --git a/sci-biology/cmdock/files/cmdock-0.2.0-include.patch b/sci-biology/cmdock/files/cmdock-0.2.0-include.patch
new file mode 100644
index 0000000000..b4a6e80bb0
--- /dev/null
+++ b/sci-biology/cmdock/files/cmdock-0.2.0-include.patch
@@ -0,0 +1,19 @@
+Rbt.cxx: Add missing include
+
+--- a/src/lib/Rbt.cxx
++++ b/src/lib/Rbt.cxx
+@@ -15,6 +15,7 @@
+ #include <algorithm> //For sort
+ #include <climits>   //For PATH_MAX
+ #include <cstdlib>   //For getenv
++#include <cstdint>   //For int types
+ #include <ctime>     //For time functions
+ #include <dirent.h>  //For directory handling
+ #include <fstream>   //For ifstream
+@@ -581,4 +582,4 @@ bool Rbt::endsWith (std::string const &fullString, std::string const &ending) {
+     } else {
+         return false;
+     }
+-}
+\ No newline at end of file
++}


^ permalink raw reply related	[flat|nested] 8+ messages in thread
* [gentoo-commits] repo/proj/guru:dev commit in: sci-biology/cmdock/, sci-biology/cmdock/files/
@ 2024-01-09  9:06 Anna Vyalkova
  0 siblings, 0 replies; 8+ messages in thread
From: Anna Vyalkova @ 2024-01-09  9:06 UTC (permalink / raw
  To: gentoo-commits

commit:     aa759c4c98861c3b3e6b50cc154c76732930eb9f
Author:     Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
AuthorDate: Tue Jan  9 09:05:39 2024 +0000
Commit:     Anna Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
CommitDate: Tue Jan  9 09:06:03 2024 +0000
URL:        https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=aa759c4c

sci-biology/cmdock: drop *really* unused files

Closes: https://bugs.gentoo.org/921229
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq.in>

 sci-biology/cmdock/cmdock-0.2.0.ebuild             |  4 +--
 sci-biology/cmdock/files/app_info_0.1.4.xml        | 40 ----------------------
 .../cmdock/files/cmdock-0.1.4-fix-detection.patch  | 15 --------
 .../cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml    | 15 --------
 4 files changed, 2 insertions(+), 72 deletions(-)

diff --git a/sci-biology/cmdock/cmdock-0.2.0.ebuild b/sci-biology/cmdock/cmdock-0.2.0.ebuild
index 66b5b8b5ef..c54bed6f98 100644
--- a/sci-biology/cmdock/cmdock-0.2.0.ebuild
+++ b/sci-biology/cmdock/cmdock-0.2.0.ebuild
@@ -1,9 +1,9 @@
-# Copyright 2021-2022 Gentoo Authors
+# Copyright 2021-2024 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
 
-PYTHON_COMPAT=( python3_{10..11} )
+PYTHON_COMPAT=( python3_{10..12} )
 BOINC_APP_OPTIONAL="true"
 inherit boinc-app flag-o-matic meson optfeature python-any-r1
 

diff --git a/sci-biology/cmdock/files/app_info_0.1.4.xml b/sci-biology/cmdock/files/app_info_0.1.4.xml
deleted file mode 100644
index 923a7b9ac1..0000000000
--- a/sci-biology/cmdock/files/app_info_0.1.4.xml
+++ /dev/null
@@ -1,40 +0,0 @@
-<app_info>
-<app>
-	<name>cmdock-boinc-zcp</name>
-	<user_friendly_name>CurieMarieDock on BOINC + zipped input, checkpoints and progress bar</user_friendly_name>
-</app>
-
-<file_info>
-	<name>cmdock-boinc-zcp_wrapper_@PV@</name>
-	<sticky/>
-	<executable/>
-</file_info>
-
-<file_info>
-	<name>cmdock-boinc-zcp_job_@PV@.xml</name>
-	<sticky/>
-</file_info>
-<file_info>
-	<name>docking_out.sd</name>
-	<sticky/>
-</file_info>
-
-<app_version>
-	<app_name>cmdock-boinc-zcp</app_name>
-	<version_num>200</version_num>
-	<file_ref>
-		<file_name>cmdock-boinc-zcp_wrapper_@PV@</file_name>
-		<main_program/>
-	</file_ref>
-	<file_ref>
-		<file_name>cmdock-boinc-zcp_job_@PV@.xml</file_name>
-		<open_name>job.xml</open_name>
-		<copy_file/>
-	</file_ref>
-	<file_ref>
-		<file_name>docking_out</file_name>
-		<open_name>docking_out</open_name>
-		<copy_file/>
-	</file_ref>
-</app_version>
-</app_info>

diff --git a/sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch b/sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch
deleted file mode 100644
index fceae1e5cf..0000000000
--- a/sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch
+++ /dev/null
@@ -1,15 +0,0 @@
---- a/meson.build
-+++ b/meson.build
-@@ -79,8 +79,10 @@
- 
- cpp_compiler = meson.get_compiler('cpp')
- 
--extended_encoders_available = (cpp_compiler.has_header('emmintrin.h') and
--    host_machine.cpu_family() == 'x86' and host_machine.cpu_family() == 'x86_64')
-+extended_encoders_available = (
-+    cpp_compiler.has_header('emmintrin.h') and
-+    (host_machine.cpu_family() == 'x86' or host_machine.cpu_family() == 'x86_64')
-+)
- 
- if not extended_encoders_available
-   add_project_arguments('-DBUNDLE_NO_SSE', language: 'cpp')

diff --git a/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml b/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml
deleted file mode 100644
index 074bb29d44..0000000000
--- a/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<job_desc>
-	<task>
-		<application>@PREFIX@/build/cmdock</application>
-		<stdout_filename>docking_log</stdout_filename>
-		<command_line>-c -j 1 -r target.prm -p @PREFIX@/data/scripts/dock.prm -f htvs.ptc -i ligands.sdf -o docking_out</command_line>
-		<checkpoint_filename>docking_out.chk</checkpoint_filename>
-		<fraction_done_filename>docking_out.progress</fraction_done_filename>
-		<setenv>CMDOCK_ROOT=@PREFIX@</setenv>
-		<setenv>LD_LIBRARY_PATH=@PREFIX@/build:$LD_LIBRARY_PATH</setenv>
-		<setenv>PERL5LIB=@PREFIX@/lib:$PERL5LIB</setenv>
-	</task>
-	<unzip_input>
-		<zipfilename>ligands.zip</zipfilename>
-	</unzip_input>
-</job_desc>


^ permalink raw reply related	[flat|nested] 8+ messages in thread
* [gentoo-commits] repo/proj/guru:dev commit in: sci-biology/cmdock/, sci-biology/cmdock/files/
@ 2022-12-12 11:44 Anna Vyalkova
  0 siblings, 0 replies; 8+ messages in thread
From: Anna Vyalkova @ 2022-12-12 11:44 UTC (permalink / raw
  To: gentoo-commits

commit:     c7742604b7a71c99ce1d96cd72380c5021bb4613
Author:     Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
AuthorDate: Mon Dec 12 11:41:07 2022 +0000
Commit:     Anna Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
CommitDate: Mon Dec 12 11:43:09 2022 +0000
URL:        https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=c7742604

sci-biology/cmdock: drop 0.1.3-r1

Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq.in>

 sci-biology/cmdock/Manifest                        |  1 -
 sci-biology/cmdock/cmdock-0.1.3-r1.ebuild          | 98 ----------------------
 sci-biology/cmdock/files/app_info_0.1.3.xml        | 37 --------
 .../cmdock/files/cmdock-boinc-zcp_job_0.1.3.xml    | 15 ----
 4 files changed, 151 deletions(-)

diff --git a/sci-biology/cmdock/Manifest b/sci-biology/cmdock/Manifest
index cac8acdf0..92078ebaa 100644
--- a/sci-biology/cmdock/Manifest
+++ b/sci-biology/cmdock/Manifest
@@ -1,2 +1 @@
-DIST cmdock-v0.1.3.tar.gz 13416412 BLAKE2B abd6382943fb2ca2459fa493f8025e335821b96a95b88267dd493c28cd3280481b41ec6480fd3514cff126ab1077e89f075e5311393b1cd366403419e9c47454 SHA512 d941b672d14bad4fda4eaeb7aa313da1ade213241a1aee392747943a03afb6c66b3e93b8fd7eb9b1d8095b0632bd48cb062879cf445e3b54ce07069ad3087b22
 DIST cmdock-v0.1.4.tar.gz 14487352 BLAKE2B 3f212d596a12046f9a3b04376ca3e6d67f4391edba6f9c6e1fd372e7c7dbb23727ebd77787f125e57afca16e0cffc9b734dcdc7a83a825c52737218df371cbfd SHA512 6e1a366d82b311da0fdcd99ecf3e10962073453c7fdec9142854d472336f7f918bb76368b52e5904bf30e0aea6b8476a3ab522469daeaef52293ac481741b4bb

diff --git a/sci-biology/cmdock/cmdock-0.1.3-r1.ebuild b/sci-biology/cmdock/cmdock-0.1.3-r1.ebuild
deleted file mode 100644
index 099977f0a..000000000
--- a/sci-biology/cmdock/cmdock-0.1.3-r1.ebuild
+++ /dev/null
@@ -1,98 +0,0 @@
-# Copyright 2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{8..10} pypy3 )
-
-BOINC_APP_OPTIONAL="true"
-
-DOCS_BUILDER="sphinx"
-DOCS_AUTODOC=0
-DOCS_DIR="docs"
-
-inherit python-any-r1 boinc-app docs meson
-
-DESCRIPTION="Program for docking ligands to proteins and nucleic acids"
-HOMEPAGE="https://gitlab.com/Jukic/cmdock https://www.rxdock.org"
-SRC_URI="https://gitlab.com/Jukic/${PN}/-/archive/v${PV}/${PN}-v${PV}.tar.gz"
-S="${WORKDIR}/${PN}-v${PV}"
-
-LICENSE="LGPL-3"
-SLOT="0/${PV}"
-KEYWORDS="~amd64"
-IUSE="apidoc boinc"
-REQUIRED_USE="apidoc? ( doc )"
-
-RDEPEND="
-	dev-lang/perl
-	boinc? ( sci-misc/boinc-wrapper )
-"
-BDEPEND="
-	dev-cpp/eigen:3
-	dev-cpp/indicators
-	>=dev-cpp/pcg-cpp-0.98.1_p20210406-r1
-	dev-libs/cxxopts
-	apidoc? ( app-doc/doxygen )
-"
-
-DOCS=( INSTALL.md README.md )
-
-BOINC_MASTER_URL="https://www.sidock.si/sidock/"
-BOINC_INVITATION_CODE="Crunch_4Science"
-BOINC_APP_HELPTEXT=\
-"The easiest way to do something useful with this application
-is to attach it to SiDock@home BOINC project."
-
-foreach_wrapper_job() {
-	sed -i "$1" \
-		-e "s:@PREFIX@:${EPREFIX}/opt/${P}:g" || die
-}
-
-src_prepare() {
-	default
-	rm -r include/indicators || die
-}
-
-src_configure() {
-	# very weird directory layout
-	local emesonargs=(
-		--prefix="${EPREFIX}/opt/${P}"
-	)
-	meson_src_configure
-}
-
-src_compile() {
-	meson_src_compile
-
-	# subshell prevents from overriding global
-	# DOCS_BUILDER and DOCS_OUTDIR
-	use apidoc && (
-		DOCS_BUILDER="doxygen"
-		DOCS_OUTDIR="${S}/_build/html/api"
-		docs_compile
-	)
-	docs_compile
-}
-
-src_install() {
-	meson_src_install
-
-	if use boinc; then
-		doappinfo "${FILESDIR}"/app_info_${PV}.xml
-		dowrapper ${PN}-boinc-zcp
-
-		# install a blank file
-		insinto $(get_project_root)
-		insopts --owner boinc --group boinc
-		: newins - docking_out.sd
-	fi
-}
-
-pkg_postinst() {
-	use boinc && boinc-app_pkg_postinst
-}
-
-pkg_postrm() {
-	use boinc && boinc-app_pkg_postrm
-}

diff --git a/sci-biology/cmdock/files/app_info_0.1.3.xml b/sci-biology/cmdock/files/app_info_0.1.3.xml
deleted file mode 100644
index 162ad0c05..000000000
--- a/sci-biology/cmdock/files/app_info_0.1.3.xml
+++ /dev/null
@@ -1,37 +0,0 @@
-<app_info>
-<app>
-	<name>cmdock-boinc-zcp</name>
-	<user_friendly_name>CurieMarieDock on BOINC + zipped input, checkpoints and progress bar</user_friendly_name>
-</app>
-
-<file_info>
-	<name>cmdock-boinc-zcp_wrapper_0.1.3</name>
-	<executable/>
-</file_info>
-
-<file_info>
-	<name>cmdock-boinc-zcp_job_0.1.3.xml</name>
-</file_info>
-<file_info>
-	<name>docking_out.sd</name>
-</file_info>
-
-<app_version>
-	<app_name>cmdock-boinc-zcp</app_name>
-	<version_num>100</version_num>
-	<file_ref>
-		<file_name>cmdock-boinc-zcp_wrapper_0.1.3</file_name>
-		<main_program/>
-	</file_ref>
-	<file_ref>
-		<file_name>cmdock-boinc-zcp_job_0.1.3.xml</file_name>
-		<open_name>job.xml</open_name>
-		<copy_file/>
-	</file_ref>
-	<file_ref>
-		<file_name>docking_out.sd</file_name>
-		<open_name>docking_out.sd</open_name>
-		<copy_file/>
-	</file_ref>
-</app_version>
-</app_info>

diff --git a/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.3.xml b/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.3.xml
deleted file mode 100644
index 074bb29d4..000000000
--- a/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.3.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<job_desc>
-	<task>
-		<application>@PREFIX@/build/cmdock</application>
-		<stdout_filename>docking_log</stdout_filename>
-		<command_line>-c -j 1 -r target.prm -p @PREFIX@/data/scripts/dock.prm -f htvs.ptc -i ligands.sdf -o docking_out</command_line>
-		<checkpoint_filename>docking_out.chk</checkpoint_filename>
-		<fraction_done_filename>docking_out.progress</fraction_done_filename>
-		<setenv>CMDOCK_ROOT=@PREFIX@</setenv>
-		<setenv>LD_LIBRARY_PATH=@PREFIX@/build:$LD_LIBRARY_PATH</setenv>
-		<setenv>PERL5LIB=@PREFIX@/lib:$PERL5LIB</setenv>
-	</task>
-	<unzip_input>
-		<zipfilename>ligands.zip</zipfilename>
-	</unzip_input>
-</job_desc>


^ permalink raw reply related	[flat|nested] 8+ messages in thread
* [gentoo-commits] repo/proj/guru:dev commit in: sci-biology/cmdock/, sci-biology/cmdock/files/
@ 2022-06-02  4:55 Anna Vyalkova
  0 siblings, 0 replies; 8+ messages in thread
From: Anna Vyalkova @ 2022-06-02  4:55 UTC (permalink / raw
  To: gentoo-commits

commit:     af0420fb5d5d6d99e31e9f0b8ff9f37033167c60
Author:     Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
AuthorDate: Thu Jun  2 04:00:28 2022 +0000
Commit:     Anna Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
CommitDate: Thu Jun  2 04:54:15 2022 +0000
URL:        https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=af0420fb

sci-biology/cmdock: fix CPU flags detection

Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq.in>

 .../{cmdock-0.1.4.ebuild => cmdock-0.1.4-r1.ebuild}       |  8 +++++---
 sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch | 15 +++++++++++++++
 sci-biology/cmdock/metadata.xml                           |  2 +-
 3 files changed, 21 insertions(+), 4 deletions(-)

diff --git a/sci-biology/cmdock/cmdock-0.1.4.ebuild b/sci-biology/cmdock/cmdock-0.1.4-r1.ebuild
similarity index 90%
rename from sci-biology/cmdock/cmdock-0.1.4.ebuild
rename to sci-biology/cmdock/cmdock-0.1.4-r1.ebuild
index 70befcfcc..cf79531ec 100644
--- a/sci-biology/cmdock/cmdock-0.1.4.ebuild
+++ b/sci-biology/cmdock/cmdock-0.1.4-r1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 2021 Gentoo Authors
+# Copyright 2021-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
 
-PYTHON_COMPAT=( python3_{8..10} pypy3 )
+PYTHON_COMPAT=( python3_{8..11} pypy3 )
 
 BOINC_APP_OPTIONAL="true"
 
@@ -14,7 +14,7 @@ DOCS_DIR="docs"
 inherit python-any-r1 boinc-app docs flag-o-matic meson
 
 DESCRIPTION="Program for docking ligands to proteins and nucleic acids"
-HOMEPAGE="https://gitlab.com/Jukic/cmdock https://www.rxdock.org"
+HOMEPAGE="https://gitlab.com/Jukic/cmdock"
 SRC_URI="https://gitlab.com/Jukic/${PN}/-/archive/v${PV}/${PN}-v${PV}.tar.gz"
 S="${WORKDIR}/${PN}-v${PV}"
 
@@ -35,6 +35,8 @@ BDEPEND="
 	doc? ( app-doc/doxygen )
 "
 
+PATCHES=( "${FILESDIR}"/cmdock-0.1.4-fix-detection.patch )
+
 DOCS=( INSTALL.md README.md )
 
 BOINC_MASTER_URL="https://www.sidock.si/sidock/"

diff --git a/sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch b/sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch
new file mode 100644
index 000000000..fceae1e5c
--- /dev/null
+++ b/sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch
@@ -0,0 +1,15 @@
+--- a/meson.build
++++ b/meson.build
+@@ -79,8 +79,10 @@
+ 
+ cpp_compiler = meson.get_compiler('cpp')
+ 
+-extended_encoders_available = (cpp_compiler.has_header('emmintrin.h') and
+-    host_machine.cpu_family() == 'x86' and host_machine.cpu_family() == 'x86_64')
++extended_encoders_available = (
++    cpp_compiler.has_header('emmintrin.h') and
++    (host_machine.cpu_family() == 'x86' or host_machine.cpu_family() == 'x86_64')
++)
+ 
+ if not extended_encoders_available
+   add_project_arguments('-DBUNDLE_NO_SSE', language: 'cpp')

diff --git a/sci-biology/cmdock/metadata.xml b/sci-biology/cmdock/metadata.xml
index beddf8090..3f0fcb55e 100644
--- a/sci-biology/cmdock/metadata.xml
+++ b/sci-biology/cmdock/metadata.xml
@@ -4,7 +4,7 @@
 	<upstream>
 		<remote-id type="gitlab">Jukic/cmdock</remote-id>
 		<bugs-to>https://gitlab.com/Jukic/cmdock/-/issues</bugs-to>
-		<doc>https://www.rxdock.org/documentation/devel/html</doc>
+		<doc>https://rxdock.gitlab.io/documentation/devel/html/</doc>
 	</upstream>
 	<maintainer type="person">
 		<email>cyber+gentoo@sysrq.in</email>


^ permalink raw reply related	[flat|nested] 8+ messages in thread
* [gentoo-commits] repo/proj/guru:dev commit in: sci-biology/cmdock/, sci-biology/cmdock/files/
@ 2021-11-25  7:16 Anna Vyalkova
  0 siblings, 0 replies; 8+ messages in thread
From: Anna Vyalkova @ 2021-11-25  7:16 UTC (permalink / raw
  To: gentoo-commits

commit:     50bb2e29704a88fb6d53a79ed4eda6a064d23c1a
Author:     Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
AuthorDate: Thu Nov 25 07:15:21 2021 +0000
Commit:     Anna Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
CommitDate: Thu Nov 25 07:15:21 2021 +0000
URL:        https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=50bb2e29

sci-biology/cmdock: add 0.1.4

Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq.in>

 sci-biology/cmdock/Manifest                        |  1 +
 sci-biology/cmdock/cmdock-0.1.3.ebuild             | 90 ---------------------
 sci-biology/cmdock/cmdock-0.1.4.ebuild             | 94 ++++++++++++++++++++++
 sci-biology/cmdock/files/app_info_0.1.4.xml        | 37 +++++++++
 .../cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml    | 15 ++++
 5 files changed, 147 insertions(+), 90 deletions(-)

diff --git a/sci-biology/cmdock/Manifest b/sci-biology/cmdock/Manifest
index 84968a8f8..cac8acdf0 100644
--- a/sci-biology/cmdock/Manifest
+++ b/sci-biology/cmdock/Manifest
@@ -1 +1,2 @@
 DIST cmdock-v0.1.3.tar.gz 13416412 BLAKE2B abd6382943fb2ca2459fa493f8025e335821b96a95b88267dd493c28cd3280481b41ec6480fd3514cff126ab1077e89f075e5311393b1cd366403419e9c47454 SHA512 d941b672d14bad4fda4eaeb7aa313da1ade213241a1aee392747943a03afb6c66b3e93b8fd7eb9b1d8095b0632bd48cb062879cf445e3b54ce07069ad3087b22
+DIST cmdock-v0.1.4.tar.gz 14487352 BLAKE2B 3f212d596a12046f9a3b04376ca3e6d67f4391edba6f9c6e1fd372e7c7dbb23727ebd77787f125e57afca16e0cffc9b734dcdc7a83a825c52737218df371cbfd SHA512 6e1a366d82b311da0fdcd99ecf3e10962073453c7fdec9142854d472336f7f918bb76368b52e5904bf30e0aea6b8476a3ab522469daeaef52293ac481741b4bb

diff --git a/sci-biology/cmdock/cmdock-0.1.3.ebuild b/sci-biology/cmdock/cmdock-0.1.3.ebuild
deleted file mode 100644
index 13e4bc2cc..000000000
--- a/sci-biology/cmdock/cmdock-0.1.3.ebuild
+++ /dev/null
@@ -1,90 +0,0 @@
-# Copyright 2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{8..10} pypy3 )
-DOCS_BUILDER="sphinx"
-DOCS_AUTODOC=0
-DOCS_DIR="docs"
-inherit python-any-r1 docs meson
-
-DESCRIPTION="Program for docking ligands to proteins and nucleic acids"
-HOMEPAGE="https://gitlab.com/Jukic/cmdock https://www.rxdock.org"
-SRC_URI="https://gitlab.com/Jukic/${PN}/-/archive/v${PV}/${PN}-v${PV}.tar.gz"
-S="${WORKDIR}/${PN}-v${PV}"
-
-LICENSE="LGPL-3"
-SLOT="0/${PV}"
-KEYWORDS="~amd64"
-IUSE="boinc"
-
-RDEPEND="
-	dev-lang/perl
-	boinc? ( sci-misc/boinc-wrapper )
-"
-BDEPEND="
-	dev-cpp/eigen:3
-	dev-cpp/indicators
-	>=dev-cpp/pcg-cpp-0.98.1_p20210406-r1
-	dev-libs/cxxopts
-"
-
-MY_PREFIX="${EPREFIX}/opt/${P}"
-
-src_prepare() {
-	default
-	rm -r include/indicators || die
-}
-
-src_configure() {
-	# very weird directory layout
-	local emesonargs=(
-		--prefix="${MY_PREFIX}"
-	)
-	meson_src_configure
-}
-
-src_compile() {
-	meson_src_compile
-	docs_compile
-}
-
-src_install() {
-	meson_src_install
-
-	if use boinc ; then
-		local project_root="/var/lib/boinc/projects/www.sidock.si_sidock"
-
-		local wrappers=( ${PN}-boinc-zcp )
-
-		insinto ${project_root}
-		insopts --owner boinc --group boinc
-
-		newins "${FILESDIR}"/app_info_${PV}.xml app_info.xml
-		touch "${ED}${project_root}"/docking_out.sd || die
-		fowners boinc:boinc ${project_root}/docking_out.sd
-
-		for app in "${wrappers[@]}" ; do
-			wrapperjob="${app}_job_${PV}.xml"
-			wrapperexe="${app}_wrapper_${PV}"
-
-			dosym -r /usr/bin/boinc-wrapper "${project_root}/${wrapperexe}"
-
-			cp "${FILESDIR}"/${wrapperjob} "${S}" || die
-			sed "s:@PREFIX@:${MY_PREFIX}:g" -i ${wrapperjob} || die
-			doins ${wrapperjob}
-		done
-	fi
-}
-
-pkg_postinst() {
-	if use boinc ; then
-		elog
-		elog "The easiest way to do something useful with this application"
-		elog "is to attach it to SiDock@home BOINC project."
-		elog
-		elog "- Master URL: https://sidock.si/sidock/"
-		elog "- Invitation code: Crunch_4Science"
-	fi
-}

diff --git a/sci-biology/cmdock/cmdock-0.1.4.ebuild b/sci-biology/cmdock/cmdock-0.1.4.ebuild
new file mode 100644
index 000000000..70befcfcc
--- /dev/null
+++ b/sci-biology/cmdock/cmdock-0.1.4.ebuild
@@ -0,0 +1,94 @@
+# Copyright 2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{8..10} pypy3 )
+
+BOINC_APP_OPTIONAL="true"
+
+DOCS_BUILDER="sphinx"
+DOCS_AUTODOC=0
+DOCS_DIR="docs"
+
+inherit python-any-r1 boinc-app docs flag-o-matic meson
+
+DESCRIPTION="Program for docking ligands to proteins and nucleic acids"
+HOMEPAGE="https://gitlab.com/Jukic/cmdock https://www.rxdock.org"
+SRC_URI="https://gitlab.com/Jukic/${PN}/-/archive/v${PV}/${PN}-v${PV}.tar.gz"
+S="${WORKDIR}/${PN}-v${PV}"
+
+LICENSE="LGPL-3 ZLIB"
+SLOT="0/${PV}"
+KEYWORDS="~amd64"
+IUSE="apidoc boinc cpu_flags_x86_sse2"
+
+RDEPEND="
+	dev-lang/perl
+	boinc? ( sci-misc/boinc-wrapper )
+"
+BDEPEND="
+	dev-cpp/eigen:3
+	dev-cpp/indicators
+	>=dev-cpp/pcg-cpp-0.98.1_p20210406-r1
+	dev-libs/cxxopts
+	doc? ( app-doc/doxygen )
+"
+
+DOCS=( INSTALL.md README.md )
+
+BOINC_MASTER_URL="https://www.sidock.si/sidock/"
+BOINC_INVITATION_CODE="Crunch_4Science"
+BOINC_APP_HELPTEXT=\
+"The easiest way to do something useful with this application
+is to attach it to SiDock@home BOINC project."
+
+foreach_wrapper_job() {
+	sed -i "$1" \
+		-e "s:@PREFIX@:${EPREFIX}/opt/${P}:g" || die
+}
+
+src_configure() {
+	# very weird directory layout
+	local emesonargs=(
+		--prefix="${EPREFIX}/opt/${P}"
+	)
+	meson_src_configure
+
+	use cpu_flags_x86_sse2 || append-cppflags "-DBUNDLE_NO_SSE"
+}
+
+src_compile() {
+	meson_src_compile
+
+	# subshell prevents overriding global
+	# DOCS_BUILDER and DOCS_OUTDIR
+	(
+		DOCS_BUILDER="doxygen"
+		DOCS_OUTDIR="${S}/_build/html/api"
+		docs_compile
+	)
+	docs_compile
+}
+
+src_install() {
+	meson_src_install
+
+	if use boinc; then
+		doappinfo "${FILESDIR}"/app_info_${PV}.xml
+		dowrapper ${PN}-boinc-zcp
+
+		# install a blank file
+		insinto $(get_project_root)
+		insopts --owner boinc --group boinc
+		: newins - docking_out.sd
+	fi
+}
+
+pkg_postinst() {
+	use boinc && boinc-app_pkg_postinst
+}
+
+pkg_postrm() {
+	use boinc && boinc-app_pkg_postrm
+}

diff --git a/sci-biology/cmdock/files/app_info_0.1.4.xml b/sci-biology/cmdock/files/app_info_0.1.4.xml
new file mode 100644
index 000000000..85dcdb16a
--- /dev/null
+++ b/sci-biology/cmdock/files/app_info_0.1.4.xml
@@ -0,0 +1,37 @@
+<app_info>
+<app>
+	<name>cmdock-boinc-zcp</name>
+	<user_friendly_name>CurieMarieDock on BOINC + zipped input, checkpoints and progress bar</user_friendly_name>
+</app>
+
+<file_info>
+	<name>cmdock-boinc-zcp_wrapper_0.1.4</name>
+	<executable/>
+</file_info>
+
+<file_info>
+	<name>cmdock-boinc-zcp_job_0.1.4.xml</name>
+</file_info>
+<file_info>
+	<name>docking_out.sd</name>
+</file_info>
+
+<app_version>
+	<app_name>cmdock-boinc-zcp</app_name>
+	<version_num>200</version_num>
+	<file_ref>
+		<file_name>cmdock-boinc-zcp_wrapper_0.1.4</file_name>
+		<main_program/>
+	</file_ref>
+	<file_ref>
+		<file_name>cmdock-boinc-zcp_job_0.1.4.xml</file_name>
+		<open_name>job.xml</open_name>
+		<copy_file/>
+	</file_ref>
+	<file_ref>
+		<file_name>docking_out.sd</file_name>
+		<open_name>docking_out.sd</open_name>
+		<copy_file/>
+	</file_ref>
+</app_version>
+</app_info>

diff --git a/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml b/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml
new file mode 100644
index 000000000..074bb29d4
--- /dev/null
+++ b/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml
@@ -0,0 +1,15 @@
+<job_desc>
+	<task>
+		<application>@PREFIX@/build/cmdock</application>
+		<stdout_filename>docking_log</stdout_filename>
+		<command_line>-c -j 1 -r target.prm -p @PREFIX@/data/scripts/dock.prm -f htvs.ptc -i ligands.sdf -o docking_out</command_line>
+		<checkpoint_filename>docking_out.chk</checkpoint_filename>
+		<fraction_done_filename>docking_out.progress</fraction_done_filename>
+		<setenv>CMDOCK_ROOT=@PREFIX@</setenv>
+		<setenv>LD_LIBRARY_PATH=@PREFIX@/build:$LD_LIBRARY_PATH</setenv>
+		<setenv>PERL5LIB=@PREFIX@/lib:$PERL5LIB</setenv>
+	</task>
+	<unzip_input>
+		<zipfilename>ligands.zip</zipfilename>
+	</unzip_input>
+</job_desc>


^ permalink raw reply related	[flat|nested] 8+ messages in thread
* [gentoo-commits] repo/proj/guru:dev commit in: sci-biology/cmdock/, sci-biology/cmdock/files/
@ 2021-07-22  8:29 Anna Vyalkova
  0 siblings, 0 replies; 8+ messages in thread
From: Anna Vyalkova @ 2021-07-22  8:29 UTC (permalink / raw
  To: gentoo-commits

commit:     4d7271caedd3ec77361bba7d98772767dfee8b78
Author:     Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
AuthorDate: Mon Jul 19 10:55:37 2021 +0000
Commit:     Anna Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
CommitDate: Thu Jul 22 08:27:39 2021 +0000
URL:        https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=4d7271ca

sci-biology/cmdock: make it prettier, fix perms

Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq.in>

 sci-biology/cmdock/cmdock-0.1.3.ebuild             | 31 +++++++++++++++++-----
 .../cmdock/files/cmdock-boinc-zcp_job_0.1.3.xml    | 10 +++----
 sci-biology/cmdock/metadata.xml                    |  1 +
 3 files changed, 30 insertions(+), 12 deletions(-)

diff --git a/sci-biology/cmdock/cmdock-0.1.3.ebuild b/sci-biology/cmdock/cmdock-0.1.3.ebuild
index e42b1f253..13e4bc2cc 100644
--- a/sci-biology/cmdock/cmdock-0.1.3.ebuild
+++ b/sci-biology/cmdock/cmdock-0.1.3.ebuild
@@ -10,7 +10,7 @@ DOCS_DIR="docs"
 inherit python-any-r1 docs meson
 
 DESCRIPTION="Program for docking ligands to proteins and nucleic acids"
-HOMEPAGE="https://gitlab.com/Jukic/cmdock"
+HOMEPAGE="https://gitlab.com/Jukic/cmdock https://www.rxdock.org"
 SRC_URI="https://gitlab.com/Jukic/${PN}/-/archive/v${PV}/${PN}-v${PV}.tar.gz"
 S="${WORKDIR}/${PN}-v${PV}"
 
@@ -30,6 +30,8 @@ BDEPEND="
 	dev-libs/cxxopts
 "
 
+MY_PREFIX="${EPREFIX}/opt/${P}"
+
 src_prepare() {
 	default
 	rm -r include/indicators || die
@@ -38,7 +40,7 @@ src_prepare() {
 src_configure() {
 	# very weird directory layout
 	local emesonargs=(
-		--prefix="${EPREFIX}/opt/cmdock-${PV}"
+		--prefix="${MY_PREFIX}"
 	)
 	meson_src_configure
 }
@@ -52,17 +54,32 @@ src_install() {
 	meson_src_install
 
 	if use boinc ; then
-		insinto /var/lib/boinc/projects/www.sidock.si_sidock
-		newins "${FILESDIR}/app_info_${PV}.xml" app_info.xml
-		doins "${FILESDIR}/cmdock-boinc-zcp_job_${PV}.xml"
+		local project_root="/var/lib/boinc/projects/www.sidock.si_sidock"
+
+		local wrappers=( ${PN}-boinc-zcp )
+
+		insinto ${project_root}
+		insopts --owner boinc --group boinc
+
+		newins "${FILESDIR}"/app_info_${PV}.xml app_info.xml
+		touch "${ED}${project_root}"/docking_out.sd || die
+		fowners boinc:boinc ${project_root}/docking_out.sd
+
+		for app in "${wrappers[@]}" ; do
+			wrapperjob="${app}_job_${PV}.xml"
+			wrapperexe="${app}_wrapper_${PV}"
+
+			dosym -r /usr/bin/boinc-wrapper "${project_root}/${wrapperexe}"
 
-		dosym -r /usr/bin/boinc-wrapper /var/lib/boinc/projects/www.sidock.si_sidock/cmdock-boinc-zcp_wrapper_${PV}
+			cp "${FILESDIR}"/${wrapperjob} "${S}" || die
+			sed "s:@PREFIX@:${MY_PREFIX}:g" -i ${wrapperjob} || die
+			doins ${wrapperjob}
+		done
 	fi
 }
 
 pkg_postinst() {
 	if use boinc ; then
-		touch /var/lib/boinc/projects/www.sidock.si_sidock/docking_out.sd || die
 		elog
 		elog "The easiest way to do something useful with this application"
 		elog "is to attach it to SiDock@home BOINC project."

diff --git a/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.3.xml b/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.3.xml
index 3c7818151..074bb29d4 100644
--- a/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.3.xml
+++ b/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.3.xml
@@ -1,13 +1,13 @@
 <job_desc>
 	<task>
-		<application>/opt/cmdock-0.1.3/build/cmdock</application>
+		<application>@PREFIX@/build/cmdock</application>
 		<stdout_filename>docking_log</stdout_filename>
-		<command_line>-c -j 1 -r target.prm -p /opt/cmdock-0.1.3/data/scripts/dock.prm -f htvs.ptc -i ligands.sdf -o docking_out</command_line>
+		<command_line>-c -j 1 -r target.prm -p @PREFIX@/data/scripts/dock.prm -f htvs.ptc -i ligands.sdf -o docking_out</command_line>
 		<checkpoint_filename>docking_out.chk</checkpoint_filename>
 		<fraction_done_filename>docking_out.progress</fraction_done_filename>
-		<setenv>CMDOCK_ROOT=/opt/cmdock-0.1.3</setenv>
-		<setenv>LD_LIBRARY_PATH=/opt/cmdock-0.1.3/build:$LD_LIBRARY_PATH</setenv>
-		<setenv>PERL5LIB=/opt/cmdock-0.1.3/lib:$PERL5LIB</setenv>
+		<setenv>CMDOCK_ROOT=@PREFIX@</setenv>
+		<setenv>LD_LIBRARY_PATH=@PREFIX@/build:$LD_LIBRARY_PATH</setenv>
+		<setenv>PERL5LIB=@PREFIX@/lib:$PERL5LIB</setenv>
 	</task>
 	<unzip_input>
 		<zipfilename>ligands.zip</zipfilename>

diff --git a/sci-biology/cmdock/metadata.xml b/sci-biology/cmdock/metadata.xml
index 9bb734387..f0cb44b3d 100644
--- a/sci-biology/cmdock/metadata.xml
+++ b/sci-biology/cmdock/metadata.xml
@@ -4,6 +4,7 @@
 	<upstream>
 		<remote-id type="gitlab">Jukic/cmdock</remote-id>
 		<bugs-to>https://gitlab.com/Jukic/cmdock/-/issues</bugs-to>
+		<doc>https://www.rxdock.org/api-documentation/devel/html</doc>
 	</upstream>
 	<maintainer type="person">
 		<email>cyber+gentoo@sysrq.in</email>


^ permalink raw reply related	[flat|nested] 8+ messages in thread
* [gentoo-commits] repo/proj/guru:dev commit in: sci-biology/cmdock/, sci-biology/cmdock/files/
@ 2021-05-29 15:49 Anna Vyalkova
  0 siblings, 0 replies; 8+ messages in thread
From: Anna Vyalkova @ 2021-05-29 15:49 UTC (permalink / raw
  To: gentoo-commits

commit:     aba20d3142c80878bbc1a3b045f14c849a63cb63
Author:     Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
AuthorDate: Sat May 29 13:37:10 2021 +0000
Commit:     Anna Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
CommitDate: Sat May 29 15:48:30 2021 +0000
URL:        https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=aba20d31

sci-biology/cmdock: add 0.1.3

* revise deps
* fix symlinks
* replace slotting with subslotting

Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq.in>

 sci-biology/cmdock/Manifest                        |  1 +
 sci-biology/cmdock/cmdock-0.1.2.ebuild             | 29 +++----
 .../{cmdock-0.1.2.ebuild => cmdock-0.1.3.ebuild}   | 35 ++++----
 .../files/{app_info.xml => app_info_0.1.2.xml}     |  2 +-
 sci-biology/cmdock/files/app_info_0.1.3.xml        | 95 ++++++++++++++++++++++
 .../cmdock/files/cmdock-boinc-zcp_job_0.1.3.xml    | 15 ++++
 .../cmdock/files/cmdock-boinc-zip_job_0.1.2.xml    |  3 +-
 .../cmdock/files/cmdock-boinc_job_0.1.3.xml        | 10 +++
 8 files changed, 155 insertions(+), 35 deletions(-)

diff --git a/sci-biology/cmdock/Manifest b/sci-biology/cmdock/Manifest
index 25663d438..c20f5e305 100644
--- a/sci-biology/cmdock/Manifest
+++ b/sci-biology/cmdock/Manifest
@@ -1 +1,2 @@
 DIST cmdock-v0.1.2.tar.gz 13394195 BLAKE2B bd377b6a953d1e38b527da4eda36aee7a634e9f0c400487d4092ae1939589890038fc90052d8bddb25457dd027fa929acd50e836d65bd5994af89116f4c770a7 SHA512 90d4114a10dde99d34cd7ea4b28399da744cc295adebb10f1f9771b59841cd13e07cae5218643c90dd2847cdb014867ab795649a3d1883396a3609c3344b8226
+DIST cmdock-v0.1.3.tar.gz 13416412 BLAKE2B abd6382943fb2ca2459fa493f8025e335821b96a95b88267dd493c28cd3280481b41ec6480fd3514cff126ab1077e89f075e5311393b1cd366403419e9c47454 SHA512 d941b672d14bad4fda4eaeb7aa313da1ade213241a1aee392747943a03afb6c66b3e93b8fd7eb9b1d8095b0632bd48cb062879cf445e3b54ce07069ad3087b22

diff --git a/sci-biology/cmdock/cmdock-0.1.2.ebuild b/sci-biology/cmdock/cmdock-0.1.2.ebuild
index aa5a4546b..00934f81c 100644
--- a/sci-biology/cmdock/cmdock-0.1.2.ebuild
+++ b/sci-biology/cmdock/cmdock-0.1.2.ebuild
@@ -3,34 +3,31 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_{7..9} pypy3 )
+PYTHON_COMPAT=( python3_{7..10} pypy3 )
 DOCS_BUILDER="sphinx"
 DOCS_AUTODOC=0
-inherit python-r1 docs meson
+DOCS_DIR="docs"
+inherit python-any-r1 docs meson
 
 DESCRIPTION="Program for docking ligands to proteins and nucleic acids"
 HOMEPAGE="https://gitlab.com/Jukic/cmdock"
 SRC_URI="https://gitlab.com/Jukic/${PN}/-/archive/v${PV}/${PN}-v${PV}.tar.gz"
 S="${WORKDIR}/${PN}-v${PV}"
-DOCS_DIR="${S}/docs"
 
 LICENSE="LGPL-3"
-SLOT="${PV}"
+SLOT="0/${PV}"
 KEYWORDS="~amd64"
-
 IUSE="boinc"
-REQUIRED_USE="doc? ( ${PYTHON_REQUIRED_USE} )"
 
-DEPEND="
-	dev-cpp/eigen
-	dev-libs/cxxopts
+RDEPEND="
+	dev-lang/perl
 	boinc? ( sci-misc/boinc-wrapper )
-	doc? ( ${PYTHON_DEPS} )
 "
-RDEPEND="${DEPEND}
-	dev-lang/perl
+BDEPEND="
+	dev-cpp/eigen:3
+	dev-cpp/pcg-cpp
+	dev-libs/cxxopts
 "
-BDEPEND="dev-cpp/pcg-cpp"
 
 src_prepare() {
 	default
@@ -55,12 +52,12 @@ src_install() {
 
 	if use boinc ; then
 		insinto /var/lib/boinc/projects/www.sidock.si_sidock
-		doins "${FILESDIR}/app_info.xml"
+		newins "${FILESDIR}/app_info_${PV}.xml" app_info.xml
 		doins "${FILESDIR}/cmdock-boinc_job_${PV}.xml"
 		doins "${FILESDIR}/cmdock-boinc-zip_job_${PV}.xml"
 
-		dosym "${EPREFIX}"/usr/bin/boinc-wrapper "/var/lib/boinc/projects/www.sidock.si_sidock/cmdock-wrapper_${PV}"
-		dosym "${EPREFIX}"/usr/bin/boinc-wrapper "/var/lib/boinc/projects/www.sidock.si_sidock/cmdock-boinc-zip_wrapper_${PV}"
+		dosym ../../../../../usr/bin/boinc-wrapper /var/lib/boinc/projects/www.sidock.si_sidock/cmdock-wrapper_${PV}
+		dosym ../../../../../usr/bin/boinc-wrapper /var/lib/boinc/projects/www.sidock.si_sidock/cmdock-boinc-zip_wrapper_${PV}
 	fi
 }
 

diff --git a/sci-biology/cmdock/cmdock-0.1.2.ebuild b/sci-biology/cmdock/cmdock-0.1.3.ebuild
similarity index 64%
copy from sci-biology/cmdock/cmdock-0.1.2.ebuild
copy to sci-biology/cmdock/cmdock-0.1.3.ebuild
index aa5a4546b..c4a2da7b4 100644
--- a/sci-biology/cmdock/cmdock-0.1.2.ebuild
+++ b/sci-biology/cmdock/cmdock-0.1.3.ebuild
@@ -3,37 +3,36 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_{7..9} pypy3 )
+PYTHON_COMPAT=( python3_{7..10} pypy3 )
 DOCS_BUILDER="sphinx"
 DOCS_AUTODOC=0
-inherit python-r1 docs meson
+DOCS_DIR="docs"
+inherit python-any-r1 docs meson
 
 DESCRIPTION="Program for docking ligands to proteins and nucleic acids"
 HOMEPAGE="https://gitlab.com/Jukic/cmdock"
 SRC_URI="https://gitlab.com/Jukic/${PN}/-/archive/v${PV}/${PN}-v${PV}.tar.gz"
 S="${WORKDIR}/${PN}-v${PV}"
-DOCS_DIR="${S}/docs"
 
 LICENSE="LGPL-3"
-SLOT="${PV}"
+SLOT="0/${PV}"
 KEYWORDS="~amd64"
-
 IUSE="boinc"
-REQUIRED_USE="doc? ( ${PYTHON_REQUIRED_USE} )"
 
-DEPEND="
-	dev-cpp/eigen
-	dev-libs/cxxopts
+RDEPEND="
+	dev-lang/perl
 	boinc? ( sci-misc/boinc-wrapper )
-	doc? ( ${PYTHON_DEPS} )
 "
-RDEPEND="${DEPEND}
-	dev-lang/perl
+BDEPEND="
+	dev-cpp/eigen:3
+	dev-cpp/indicators
+	dev-cpp/pcg-cpp
+	dev-libs/cxxopts
 "
-BDEPEND="dev-cpp/pcg-cpp"
 
 src_prepare() {
 	default
+	rm -r include/indicators || die
 	sed "s|pcg_cpp_dep = dependency.*|pcg_cpp_dep = declare_dependency(include_directories: '/usr/include')|" -i meson.build || die
 }
 
@@ -55,12 +54,14 @@ src_install() {
 
 	if use boinc ; then
 		insinto /var/lib/boinc/projects/www.sidock.si_sidock
-		doins "${FILESDIR}/app_info.xml"
+		newins "${FILESDIR}/app_info_${PV}.xml" app_info.xml
 		doins "${FILESDIR}/cmdock-boinc_job_${PV}.xml"
-		doins "${FILESDIR}/cmdock-boinc-zip_job_${PV}.xml"
+		doins "${FILESDIR}/cmdock-boinc-zcp_job_${PV}.xml"
+		newins "${FILESDIR}/cmdock-boinc-zcp_job_${PV}.xml" cmdock-boinc-zip_job_${PV}.xml
 
-		dosym "${EPREFIX}"/usr/bin/boinc-wrapper "/var/lib/boinc/projects/www.sidock.si_sidock/cmdock-wrapper_${PV}"
-		dosym "${EPREFIX}"/usr/bin/boinc-wrapper "/var/lib/boinc/projects/www.sidock.si_sidock/cmdock-boinc-zip_wrapper_${PV}"
+		dosym ../../../../../usr/bin/boinc-wrapper /var/lib/boinc/projects/www.sidock.si_sidock/cmdock-wrapper_${PV}
+		dosym ../../../../../usr/bin/boinc-wrapper /var/lib/boinc/projects/www.sidock.si_sidock/cmdock-boinc-zcp_wrapper_${PV}
+		dosym ../../../../../usr/bin/boinc-wrapper /var/lib/boinc/projects/www.sidock.si_sidock/cmdock-boinc-zip_wrapper_${PV}
 	fi
 }
 

diff --git a/sci-biology/cmdock/files/app_info.xml b/sci-biology/cmdock/files/app_info_0.1.2.xml
similarity index 97%
rename from sci-biology/cmdock/files/app_info.xml
rename to sci-biology/cmdock/files/app_info_0.1.2.xml
index eb222052b..f7575656b 100644
--- a/sci-biology/cmdock/files/app_info.xml
+++ b/sci-biology/cmdock/files/app_info_0.1.2.xml
@@ -47,7 +47,7 @@
 </app_version>
 <app_version>
 	<app_name>cmdock-boinc-zip</app_name>
-	<version_num>200</version_num>
+	<version_num>204</version_num>
 	<file_ref>
 		<file_name>cmdock-boinc-zip_wrapper_0.1.2</file_name>
 		<main_program/>

diff --git a/sci-biology/cmdock/files/app_info_0.1.3.xml b/sci-biology/cmdock/files/app_info_0.1.3.xml
new file mode 100644
index 000000000..5c901eba8
--- /dev/null
+++ b/sci-biology/cmdock/files/app_info_0.1.3.xml
@@ -0,0 +1,95 @@
+<app_info>
+<app>
+	<name>cmdock-boinc</name>
+	<user_friendly_name>CurieMarieDock on BOINC</user_friendly_name>
+</app>
+<app>
+	<name>cmdock-boinc-zip</name>
+	<user_friendly_name>CurieMarieDock on BOINC + zipped input</user_friendly_name>
+</app>
+<app>
+	<name>cmdock-boinc-zcp</name>
+	<user_friendly_name>CurieMarieDock on BOINC + zipped input, checkpoints and progress bar</user_friendly_name>
+</app>
+
+<file_info>
+	<name>cmdock-wrapper_0.1.3</name>
+	<executable/>
+</file_info>
+<file_info>
+	<name>cmdock-boinc-zcp_wrapper_0.1.3</name>
+	<executable/>
+</file_info>
+<file_info>
+	<name>cmdock-boinc-zip_wrapper_0.1.3</name>
+	<executable/>
+</file_info>
+
+<file_info>
+	<name>cmdock-boinc_job_0.1.3.xml</name>
+</file_info>
+<file_info>
+	<name>cmdock-boinc-zcp_job_0.1.3.xml</name>
+</file_info>
+<file_info>
+	<name>cmdock-boinc-zip_job_0.1.3.xml</name>
+</file_info>
+<file_info>
+	<name>docking_out.sd</name>
+</file_info>
+
+<app_version>
+	<app_name>cmdock-boinc</app_name>
+	<version_num>103</version_num>
+	<file_ref>
+		<file_name>cmdock-wrapper_0.1.3</file_name>
+		<main_program/>
+	</file_ref>
+	<file_ref>
+		<file_name>cmdock-boinc_job_0.1.3.xml</file_name>
+		<open_name>job.xml</open_name>
+		<copy_file/>
+	</file_ref>
+	<file_ref>
+		<file_name>docking_out.sd</file_name>
+		<open_name>docking_out.sd</open_name>
+		<copy_file/>
+	</file_ref>
+</app_version>
+<app_version>
+	<app_name>cmdock-boinc-zcp</app_name>
+	<version_num>100</version_num>
+	<file_ref>
+		<file_name>cmdock-boinc-zcp_wrapper_0.1.3</file_name>
+		<main_program/>
+	</file_ref>
+	<file_ref>
+		<file_name>cmdock-boinc-zcp_job_0.1.3.xml</file_name>
+		<open_name>job.xml</open_name>
+		<copy_file/>
+	</file_ref>
+	<file_ref>
+		<file_name>docking_out.sd</file_name>
+		<open_name>docking_out.sd</open_name>
+		<copy_file/>
+	</file_ref>
+</app_version>
+<app_version>
+	<app_name>cmdock-boinc-zip</app_name>
+	<version_num>300</version_num>
+	<file_ref>
+		<file_name>cmdock-boinc-zip_wrapper_0.1.3</file_name>
+		<main_program/>
+	</file_ref>
+	<file_ref>
+		<file_name>cmdock-boinc-zip_job_0.1.3.xml</file_name>
+		<open_name>job.xml</open_name>
+		<copy_file/>
+	</file_ref>
+	<file_ref>
+		<file_name>docking_out.sd</file_name>
+		<open_name>docking_out.sd</open_name>
+		<copy_file/>
+	</file_ref>
+</app_version>
+</app_info>

diff --git a/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.3.xml b/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.3.xml
new file mode 100644
index 000000000..3c7818151
--- /dev/null
+++ b/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.3.xml
@@ -0,0 +1,15 @@
+<job_desc>
+	<task>
+		<application>/opt/cmdock-0.1.3/build/cmdock</application>
+		<stdout_filename>docking_log</stdout_filename>
+		<command_line>-c -j 1 -r target.prm -p /opt/cmdock-0.1.3/data/scripts/dock.prm -f htvs.ptc -i ligands.sdf -o docking_out</command_line>
+		<checkpoint_filename>docking_out.chk</checkpoint_filename>
+		<fraction_done_filename>docking_out.progress</fraction_done_filename>
+		<setenv>CMDOCK_ROOT=/opt/cmdock-0.1.3</setenv>
+		<setenv>LD_LIBRARY_PATH=/opt/cmdock-0.1.3/build:$LD_LIBRARY_PATH</setenv>
+		<setenv>PERL5LIB=/opt/cmdock-0.1.3/lib:$PERL5LIB</setenv>
+	</task>
+	<unzip_input>
+		<zipfilename>ligands.zip</zipfilename>
+	</unzip_input>
+</job_desc>

diff --git a/sci-biology/cmdock/files/cmdock-boinc-zip_job_0.1.2.xml b/sci-biology/cmdock/files/cmdock-boinc-zip_job_0.1.2.xml
index 2691d09ea..a11f1fe9b 100644
--- a/sci-biology/cmdock/files/cmdock-boinc-zip_job_0.1.2.xml
+++ b/sci-biology/cmdock/files/cmdock-boinc-zip_job_0.1.2.xml
@@ -2,7 +2,8 @@
 	<task>
 		<application>/opt/cmdock-0.1.2/build/cmdock</application>
 		<stdout_filename>docking_log</stdout_filename>
-		<command_line>-r target.prm -p /opt/cmdock-0.1.2/data/scripts/dock.prm -f htvs.ptc -i ligands.sdf -o docking_out</command_line>
+		<command_line>-c -r target.prm -p /opt/cmdock-0.1.2/data/scripts/dock.prm -f htvs.ptc -i ligands.sdf -o docking_out</command_line>
+		<checkpoint_filename>docking_out.chk</checkpoint_filename>
 		<setenv>CMDOCK_ROOT=/opt/cmdock-0.1.2</setenv>
 		<setenv>LD_LIBRARY_PATH=/opt/cmdock-0.1.2/build:$LD_LIBRARY_PATH</setenv>
 		<setenv>PERL5LIB=/opt/cmdock-0.1.2/lib:$PERL5LIB</setenv>

diff --git a/sci-biology/cmdock/files/cmdock-boinc_job_0.1.3.xml b/sci-biology/cmdock/files/cmdock-boinc_job_0.1.3.xml
new file mode 100644
index 000000000..6082dc8fe
--- /dev/null
+++ b/sci-biology/cmdock/files/cmdock-boinc_job_0.1.3.xml
@@ -0,0 +1,10 @@
+<job_desc>
+	<task>
+		<application>/opt/cmdock-0.1.3/build/cmdock</application>
+		<stdout_filename>docking_log</stdout_filename>
+		<command_line>-r target.prm -p /opt/cmdock-0.1.3/data/scripts/dock.prm -f htvs.ptc -i ligands.sdf -o docking_out</command_line>
+		<setenv>CMDOCK_ROOT=/opt/cmdock-0.1.3</setenv>
+		<setenv>LD_LIBRARY_PATH=/opt/cmdock-0.1.3/build:$LD_LIBRARY_PATH</setenv>
+		<setenv>PERL5LIB=/opt/cmdock-0.1.3/lib:$PERL5LIB</setenv>
+	</task>
+</job_desc>


^ permalink raw reply related	[flat|nested] 8+ messages in thread
* [gentoo-commits] repo/proj/guru:dev commit in: sci-biology/cmdock/, sci-biology/cmdock/files/
@ 2021-05-20 12:47 Anna Vyalkova
  0 siblings, 0 replies; 8+ messages in thread
From: Anna Vyalkova @ 2021-05-20 12:47 UTC (permalink / raw
  To: gentoo-commits

commit:     1883f124c2d77a9648dae60406fb1e956186af04
Author:     Anna Vyalkova <cyber <AT> sysrq <DOT> in>
AuthorDate: Thu May 20 12:26:42 2021 +0000
Commit:     Anna Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
CommitDate: Thu May 20 12:47:26 2021 +0000
URL:        https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=1883f124

sci-biology/cmdock: fixes in deps and app_info.xml

1) Python is only used by Sphinx to build documentation
2) Rename app_config.xml to app_info.xml:
   https://boinc.berkeley.edu/wiki/Anonymous_platform

Signed-off-by: Anna Vyalkova <cyber <AT> sysrq.in>

 sci-biology/cmdock/cmdock-0.1.2.ebuild                    | 7 ++++---
 sci-biology/cmdock/files/{app_config.xml => app_info.xml} | 0
 2 files changed, 4 insertions(+), 3 deletions(-)

diff --git a/sci-biology/cmdock/cmdock-0.1.2.ebuild b/sci-biology/cmdock/cmdock-0.1.2.ebuild
index 03f3d769e..aa5a4546b 100644
--- a/sci-biology/cmdock/cmdock-0.1.2.ebuild
+++ b/sci-biology/cmdock/cmdock-0.1.2.ebuild
@@ -19,12 +19,13 @@ SLOT="${PV}"
 KEYWORDS="~amd64"
 
 IUSE="boinc"
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
+REQUIRED_USE="doc? ( ${PYTHON_REQUIRED_USE} )"
 
-DEPEND="${PYTHON_DEPS}
+DEPEND="
 	dev-cpp/eigen
 	dev-libs/cxxopts
 	boinc? ( sci-misc/boinc-wrapper )
+	doc? ( ${PYTHON_DEPS} )
 "
 RDEPEND="${DEPEND}
 	dev-lang/perl
@@ -54,7 +55,7 @@ src_install() {
 
 	if use boinc ; then
 		insinto /var/lib/boinc/projects/www.sidock.si_sidock
-		doins "${FILESDIR}/app_config.xml"
+		doins "${FILESDIR}/app_info.xml"
 		doins "${FILESDIR}/cmdock-boinc_job_${PV}.xml"
 		doins "${FILESDIR}/cmdock-boinc-zip_job_${PV}.xml"
 

diff --git a/sci-biology/cmdock/files/app_config.xml b/sci-biology/cmdock/files/app_info.xml
similarity index 100%
rename from sci-biology/cmdock/files/app_config.xml
rename to sci-biology/cmdock/files/app_info.xml


^ permalink raw reply related	[flat|nested] 8+ messages in thread
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2021-05-20 12:47 Anna Vyalkova

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