[gentoo-commits] repo/proj/guru:dev commit in: sci-biology/cmdock/, sci-biology/cmdock/files/

["Anna Vyalkova" <cyber+gentoo@sysrq.in>]

commit:     aa759c4c98861c3b3e6b50cc154c76732930eb9f
Author:     Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
AuthorDate: Tue Jan  9 09:05:39 2024 +0000
Commit:     Anna Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
CommitDate: Tue Jan  9 09:06:03 2024 +0000
URL:        https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=aa759c4c

sci-biology/cmdock: drop *really* unused files

Closes: https://bugs.gentoo.org/921229
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq.in>

 sci-biology/cmdock/cmdock-0.2.0.ebuild             |  4 +--
 sci-biology/cmdock/files/app_info_0.1.4.xml        | 40 ----------------------
 .../cmdock/files/cmdock-0.1.4-fix-detection.patch  | 15 --------
 .../cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml    | 15 --------
 4 files changed, 2 insertions(+), 72 deletions(-)

diff --git a/sci-biology/cmdock/cmdock-0.2.0.ebuild b/sci-biology/cmdock/cmdock-0.2.0.ebuild
index 66b5b8b5ef..c54bed6f98 100644
--- a/sci-biology/cmdock/cmdock-0.2.0.ebuild
+++ b/sci-biology/cmdock/cmdock-0.2.0.ebuild
@@ -1,9 +1,9 @@
-# Copyright 2021-2022 Gentoo Authors
+# Copyright 2021-2024 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
 
-PYTHON_COMPAT=( python3_{10..11} )
+PYTHON_COMPAT=( python3_{10..12} )
 BOINC_APP_OPTIONAL="true"
 inherit boinc-app flag-o-matic meson optfeature python-any-r1
 

diff --git a/sci-biology/cmdock/files/app_info_0.1.4.xml b/sci-biology/cmdock/files/app_info_0.1.4.xml
deleted file mode 100644
index 923a7b9ac1..0000000000
--- a/sci-biology/cmdock/files/app_info_0.1.4.xml
+++ /dev/null
@@ -1,40 +0,0 @@
-<app_info>
-<app>
-	<name>cmdock-boinc-zcp</name>
-	<user_friendly_name>CurieMarieDock on BOINC + zipped input, checkpoints and progress bar</user_friendly_name>
-</app>
-
-<file_info>
-	<name>cmdock-boinc-zcp_wrapper_@PV@</name>
-	<sticky/>
-	<executable/>
-</file_info>
-
-<file_info>
-	<name>cmdock-boinc-zcp_job_@PV@.xml</name>
-	<sticky/>
-</file_info>
-<file_info>
-	<name>docking_out.sd</name>
-	<sticky/>
-</file_info>
-
-<app_version>
-	<app_name>cmdock-boinc-zcp</app_name>
-	<version_num>200</version_num>
-	<file_ref>
-		<file_name>cmdock-boinc-zcp_wrapper_@PV@</file_name>
-		<main_program/>
-	</file_ref>
-	<file_ref>
-		<file_name>cmdock-boinc-zcp_job_@PV@.xml</file_name>
-		<open_name>job.xml</open_name>
-		<copy_file/>
-	</file_ref>
-	<file_ref>
-		<file_name>docking_out</file_name>
-		<open_name>docking_out</open_name>
-		<copy_file/>
-	</file_ref>
-</app_version>
-</app_info>

diff --git a/sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch b/sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch
deleted file mode 100644
index fceae1e5cf..0000000000
--- a/sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch
+++ /dev/null
@@ -1,15 +0,0 @@
---- a/meson.build
-+++ b/meson.build
-@@ -79,8 +79,10 @@
- 
- cpp_compiler = meson.get_compiler('cpp')
- 
--extended_encoders_available = (cpp_compiler.has_header('emmintrin.h') and
--    host_machine.cpu_family() == 'x86' and host_machine.cpu_family() == 'x86_64')
-+extended_encoders_available = (
-+    cpp_compiler.has_header('emmintrin.h') and
-+    (host_machine.cpu_family() == 'x86' or host_machine.cpu_family() == 'x86_64')
-+)
- 
- if not extended_encoders_available
-   add_project_arguments('-DBUNDLE_NO_SSE', language: 'cpp')

diff --git a/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml b/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml
deleted file mode 100644
index 074bb29d44..0000000000
--- a/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<job_desc>
-	<task>
-		<application>@PREFIX@/build/cmdock</application>
-		<stdout_filename>docking_log</stdout_filename>
-		<command_line>-c -j 1 -r target.prm -p @PREFIX@/data/scripts/dock.prm -f htvs.ptc -i ligands.sdf -o docking_out</command_line>
-		<checkpoint_filename>docking_out.chk</checkpoint_filename>
-		<fraction_done_filename>docking_out.progress</fraction_done_filename>
-		<setenv>CMDOCK_ROOT=@PREFIX@</setenv>
-		<setenv>LD_LIBRARY_PATH=@PREFIX@/build:$LD_LIBRARY_PATH</setenv>
-		<setenv>PERL5LIB=@PREFIX@/lib:$PERL5LIB</setenv>
-	</task>
-	<unzip_input>
-		<zipfilename>ligands.zip</zipfilename>
-	</unzip_input>
-</job_desc>