From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (2048 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id EC67415803E for ; Sat, 30 Dec 2023 18:21:19 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 05A802BC04C; Sat, 30 Dec 2023 18:21:19 +0000 (UTC) Received: from smtp.gentoo.org (woodpecker.gentoo.org [140.211.166.183]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id DB0452BC04C for ; Sat, 30 Dec 2023 18:21:18 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id F24AC33BDC5 for ; Sat, 30 Dec 2023 18:21:17 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 0EB8A14BE for ; Sat, 30 Dec 2023 18:21:15 +0000 (UTC) From: "Michael Mair-Keimberger" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Michael Mair-Keimberger" Message-ID: <1703960401.1298cd25348ad37dac19c0838415436a8c18d3f5.mmk@gentoo> Subject: [gentoo-commits] repo/proj/guru:dev commit in: sci-biology/cmdock/files/ X-VCS-Repository: repo/proj/guru X-VCS-Files: sci-biology/cmdock/files/app_info_0.1.4.xml sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml sci-biology/cmdock/files/cmdock-l_job_0.2.0.xml X-VCS-Directories: sci-biology/cmdock/files/ X-VCS-Committer: mmk X-VCS-Committer-Name: Michael Mair-Keimberger X-VCS-Revision: 1298cd25348ad37dac19c0838415436a8c18d3f5 X-VCS-Branch: dev Date: Sat, 30 Dec 2023 18:21:15 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 2e69f755-f6c2-47a9-b31d-46bf2f68e591 X-Archives-Hash: 48ddadc41aebafe57ef115a01b9e7ee2 commit: 1298cd25348ad37dac19c0838415436a8c18d3f5 Author: Michael Mair-Keimberger levelnine at> AuthorDate: Sat Dec 30 18:16:39 2023 +0000 Commit: Michael Mair-Keimberger levelnine at> CommitDate: Sat Dec 30 18:20:01 2023 +0000 URL: https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=1298cd25 sci-biology/cmdock: remove unused patches Signed-off-by: Michael Mair-Keimberger levelnine.at> sci-biology/cmdock/files/app_info_0.1.4.xml | 40 ---------------------- .../cmdock/files/cmdock-0.1.4-fix-detection.patch | 15 -------- .../cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml | 15 -------- sci-biology/cmdock/files/cmdock-l_job_0.2.0.xml | 15 -------- 4 files changed, 85 deletions(-) diff --git a/sci-biology/cmdock/files/app_info_0.1.4.xml b/sci-biology/cmdock/files/app_info_0.1.4.xml deleted file mode 100644 index 923a7b9ac1..0000000000 --- a/sci-biology/cmdock/files/app_info_0.1.4.xml +++ /dev/null @@ -1,40 +0,0 @@ - - - cmdock-boinc-zcp - CurieMarieDock on BOINC + zipped input, checkpoints and progress bar - - - - cmdock-boinc-zcp_wrapper_@PV@ - - - - - - cmdock-boinc-zcp_job_@PV@.xml - - - - docking_out.sd - - - - - cmdock-boinc-zcp - 200 - - cmdock-boinc-zcp_wrapper_@PV@ - - - - cmdock-boinc-zcp_job_@PV@.xml - job.xml - - - - docking_out - docking_out - - - - diff --git a/sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch b/sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch deleted file mode 100644 index fceae1e5cf..0000000000 --- a/sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch +++ /dev/null @@ -1,15 +0,0 @@ ---- a/meson.build -+++ b/meson.build -@@ -79,8 +79,10 @@ - - cpp_compiler = meson.get_compiler('cpp') - --extended_encoders_available = (cpp_compiler.has_header('emmintrin.h') and -- host_machine.cpu_family() == 'x86' and host_machine.cpu_family() == 'x86_64') -+extended_encoders_available = ( -+ cpp_compiler.has_header('emmintrin.h') and -+ (host_machine.cpu_family() == 'x86' or host_machine.cpu_family() == 'x86_64') -+) - - if not extended_encoders_available - add_project_arguments('-DBUNDLE_NO_SSE', language: 'cpp') diff --git a/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml b/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml deleted file mode 100644 index 074bb29d44..0000000000 --- a/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml +++ /dev/null @@ -1,15 +0,0 @@ - - - @PREFIX@/build/cmdock - docking_log - -c -j 1 -r target.prm -p @PREFIX@/data/scripts/dock.prm -f htvs.ptc -i ligands.sdf -o docking_out - docking_out.chk - docking_out.progress - CMDOCK_ROOT=@PREFIX@ - LD_LIBRARY_PATH=@PREFIX@/build:$LD_LIBRARY_PATH - PERL5LIB=@PREFIX@/lib:$PERL5LIB - - - ligands.zip - - diff --git a/sci-biology/cmdock/files/cmdock-l_job_0.2.0.xml b/sci-biology/cmdock/files/cmdock-l_job_0.2.0.xml deleted file mode 100644 index a163eb29cf..0000000000 --- a/sci-biology/cmdock/files/cmdock-l_job_0.2.0.xml +++ /dev/null @@ -1,15 +0,0 @@ - - - cmdock - docking_log - -c -j 1 -b 1 -x -r target.prm -p "@PREFIX@/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out - docking_out.chk - docking_out.progress - CMDOCK_ROOT=@PREFIX@ - LD_LIBRARY_PATH=@PREFIX@/lib:$LD_LIBRARY_PATH - PERL5LIB=@PREFIX@/lib:$PERL5LIB - - - ligands.zip - -