From: "Michael Mair-Keimberger" <mmk@levelnine.at>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] repo/proj/guru:dev commit in: sci-biology/cmdock/files/
Date: Sat, 30 Dec 2023 18:21:15 +0000 (UTC) [thread overview]
Message-ID: <1703960401.1298cd25348ad37dac19c0838415436a8c18d3f5.mmk@gentoo> (raw)
commit: 1298cd25348ad37dac19c0838415436a8c18d3f5
Author: Michael Mair-Keimberger <mmk <AT> levelnine <DOT> at>
AuthorDate: Sat Dec 30 18:16:39 2023 +0000
Commit: Michael Mair-Keimberger <mmk <AT> levelnine <DOT> at>
CommitDate: Sat Dec 30 18:20:01 2023 +0000
URL: https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=1298cd25
sci-biology/cmdock: remove unused patches
Signed-off-by: Michael Mair-Keimberger <mmk <AT> levelnine.at>
sci-biology/cmdock/files/app_info_0.1.4.xml | 40 ----------------------
.../cmdock/files/cmdock-0.1.4-fix-detection.patch | 15 --------
.../cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml | 15 --------
sci-biology/cmdock/files/cmdock-l_job_0.2.0.xml | 15 --------
4 files changed, 85 deletions(-)
diff --git a/sci-biology/cmdock/files/app_info_0.1.4.xml b/sci-biology/cmdock/files/app_info_0.1.4.xml
deleted file mode 100644
index 923a7b9ac1..0000000000
--- a/sci-biology/cmdock/files/app_info_0.1.4.xml
+++ /dev/null
@@ -1,40 +0,0 @@
-<app_info>
-<app>
- <name>cmdock-boinc-zcp</name>
- <user_friendly_name>CurieMarieDock on BOINC + zipped input, checkpoints and progress bar</user_friendly_name>
-</app>
-
-<file_info>
- <name>cmdock-boinc-zcp_wrapper_@PV@</name>
- <sticky/>
- <executable/>
-</file_info>
-
-<file_info>
- <name>cmdock-boinc-zcp_job_@PV@.xml</name>
- <sticky/>
-</file_info>
-<file_info>
- <name>docking_out.sd</name>
- <sticky/>
-</file_info>
-
-<app_version>
- <app_name>cmdock-boinc-zcp</app_name>
- <version_num>200</version_num>
- <file_ref>
- <file_name>cmdock-boinc-zcp_wrapper_@PV@</file_name>
- <main_program/>
- </file_ref>
- <file_ref>
- <file_name>cmdock-boinc-zcp_job_@PV@.xml</file_name>
- <open_name>job.xml</open_name>
- <copy_file/>
- </file_ref>
- <file_ref>
- <file_name>docking_out</file_name>
- <open_name>docking_out</open_name>
- <copy_file/>
- </file_ref>
-</app_version>
-</app_info>
diff --git a/sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch b/sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch
deleted file mode 100644
index fceae1e5cf..0000000000
--- a/sci-biology/cmdock/files/cmdock-0.1.4-fix-detection.patch
+++ /dev/null
@@ -1,15 +0,0 @@
---- a/meson.build
-+++ b/meson.build
-@@ -79,8 +79,10 @@
-
- cpp_compiler = meson.get_compiler('cpp')
-
--extended_encoders_available = (cpp_compiler.has_header('emmintrin.h') and
-- host_machine.cpu_family() == 'x86' and host_machine.cpu_family() == 'x86_64')
-+extended_encoders_available = (
-+ cpp_compiler.has_header('emmintrin.h') and
-+ (host_machine.cpu_family() == 'x86' or host_machine.cpu_family() == 'x86_64')
-+)
-
- if not extended_encoders_available
- add_project_arguments('-DBUNDLE_NO_SSE', language: 'cpp')
diff --git a/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml b/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml
deleted file mode 100644
index 074bb29d44..0000000000
--- a/sci-biology/cmdock/files/cmdock-boinc-zcp_job_0.1.4.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<job_desc>
- <task>
- <application>@PREFIX@/build/cmdock</application>
- <stdout_filename>docking_log</stdout_filename>
- <command_line>-c -j 1 -r target.prm -p @PREFIX@/data/scripts/dock.prm -f htvs.ptc -i ligands.sdf -o docking_out</command_line>
- <checkpoint_filename>docking_out.chk</checkpoint_filename>
- <fraction_done_filename>docking_out.progress</fraction_done_filename>
- <setenv>CMDOCK_ROOT=@PREFIX@</setenv>
- <setenv>LD_LIBRARY_PATH=@PREFIX@/build:$LD_LIBRARY_PATH</setenv>
- <setenv>PERL5LIB=@PREFIX@/lib:$PERL5LIB</setenv>
- </task>
- <unzip_input>
- <zipfilename>ligands.zip</zipfilename>
- </unzip_input>
-</job_desc>
diff --git a/sci-biology/cmdock/files/cmdock-l_job_0.2.0.xml b/sci-biology/cmdock/files/cmdock-l_job_0.2.0.xml
deleted file mode 100644
index a163eb29cf..0000000000
--- a/sci-biology/cmdock/files/cmdock-l_job_0.2.0.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<job_desc>
- <task>
- <application>cmdock</application>
- <stdout_filename>docking_log</stdout_filename>
- <command_line>-c -j 1 -b 1 -x -r target.prm -p "@PREFIX@/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out</command_line>
- <checkpoint_filename>docking_out.chk</checkpoint_filename>
- <fraction_done_filename>docking_out.progress</fraction_done_filename>
- <setenv>CMDOCK_ROOT=@PREFIX@</setenv>
- <setenv>LD_LIBRARY_PATH=@PREFIX@/lib:$LD_LIBRARY_PATH</setenv>
- <setenv>PERL5LIB=@PREFIX@/lib:$PERL5LIB</setenv>
- </task>
- <unzip_input>
- <zipfilename>ligands.zip</zipfilename>
- </unzip_input>
-</job_desc>
next reply other threads:[~2023-12-30 18:21 UTC|newest]
Thread overview: 5+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-12-30 18:21 Michael Mair-Keimberger [this message]
-- strict thread matches above, loose matches on Subject: below --
2024-01-09 9:06 [gentoo-commits] repo/proj/guru:dev commit in: sci-biology/cmdock/files/ Anna Vyalkova
2022-06-25 19:42 Anna Vyalkova
2021-05-22 15:21 Anna Vyalkova
2021-05-20 21:49 Anna Vyalkova
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