* [gentoo-commits] proj/sci:master commit in: dev-python/heudiconv/
@ 2023-02-01 14:13 Horea Christian
0 siblings, 0 replies; 5+ messages in thread
From: Horea Christian @ 2023-02-01 14:13 UTC (permalink / raw
To: gentoo-commits
commit: b784b47e92252023404873bfe3fd5952792b0291
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Jan 31 22:00:51 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Wed Feb 1 14:13:39 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b784b47e
dev-python/heudiconv: revision bump, test and dep update
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
.../{heudiconv-0.11.6.ebuild => heudiconv-0.11.6-r1.ebuild} | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
diff --git a/dev-python/heudiconv/heudiconv-0.11.6.ebuild b/dev-python/heudiconv/heudiconv-0.11.6-r1.ebuild
similarity index 96%
rename from dev-python/heudiconv/heudiconv-0.11.6.ebuild
rename to dev-python/heudiconv/heudiconv-0.11.6-r1.ebuild
index 6c3c6b59d..11b98367e 100644
--- a/dev-python/heudiconv/heudiconv-0.11.6.ebuild
+++ b/dev-python/heudiconv/heudiconv-0.11.6-r1.ebuild
@@ -19,12 +19,13 @@ LICENSE="Apache-2.0"
KEYWORDS="~amd64 ~x86"
RDEPEND="
- sci-libs/nibabel[${PYTHON_USEDEP}]
- sci-libs/pydicom[${PYTHON_USEDEP}]
- sci-libs/nipype[${PYTHON_USEDEP}]
- sci-biology/dcmstack[${PYTHON_USEDEP}]
dev-python/filelock[${PYTHON_USEDEP}]
dev-python/versioningit[${PYTHON_USEDEP}]
+ sci-biology/dcm2niix
+ sci-biology/dcmstack[${PYTHON_USEDEP}]
+ sci-libs/nibabel[${PYTHON_USEDEP}]
+ sci-libs/nipype[${PYTHON_USEDEP}]
+ sci-libs/pydicom[${PYTHON_USEDEP}]
"
BDEPEND="
test? (
@@ -35,7 +36,6 @@ BDEPEND="
# Reported upstream:
# https://github.com/nipy/heudiconv/issues/627
EPYTEST_DESELECT=(
- "heudiconv/tests/test_convert.py::test_b0dwi_for_fmap"
"heudiconv/tests/test_dicoms.py::test_embed_dicom_and_nifti_metadata"
"heudiconv/tests/test_heuristics.py::test_reproin_largely_smoke"
"heudiconv/tests/test_heuristics.py::test_scans_keys_reproin"
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/heudiconv/
@ 2023-05-22 12:10 Horea Christian
0 siblings, 0 replies; 5+ messages in thread
From: Horea Christian @ 2023-05-22 12:10 UTC (permalink / raw
To: gentoo-commits
commit: 8d5fe1bdb23b95225f1053fdca66e7f7e4b676dd
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon May 22 11:56:08 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon May 22 11:56:16 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8d5fe1bd
dev-python/heudiconv: update SRC_URI, test fix
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/heudiconv/heudiconv-0.11.6-r1.ebuild | 10 +++++++---
1 file changed, 7 insertions(+), 3 deletions(-)
diff --git a/dev-python/heudiconv/heudiconv-0.11.6-r1.ebuild b/dev-python/heudiconv/heudiconv-0.11.6-r1.ebuild
index 847424235..048890f37 100644
--- a/dev-python/heudiconv/heudiconv-0.11.6-r1.ebuild
+++ b/dev-python/heudiconv/heudiconv-0.11.6-r1.ebuild
@@ -4,15 +4,14 @@
EAPI=8
DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_10 )
-inherit distutils-r1
+PYTHON_COMPAT=( python3_{10..11} )
+inherit distutils-r1 pypi
DESCRIPTION="Flexible DICOM conversion to structured directory layouts"
HOMEPAGE="
https://github.com/nipy/heudiconv
https://heudiconv.readthedocs.io/en/latest/
"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
SLOT="0"
LICENSE="Apache-2.0"
@@ -29,6 +28,7 @@ RDEPEND="
"
BDEPEND="
test? (
+ dev-python/mock[${PYTHON_USEDEP}]
dev-python/six[${PYTHON_USEDEP}]
)
"
@@ -39,4 +39,8 @@ PATCHES=(
"${FILESDIR}/${P}-gitenv.patch"
)
+EPYTEST_DESELECT=(
+ heudiconv/tests/test_main.py::test_prepare_for_datalad
+)
+
distutils_enable_tests pytest
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/heudiconv/
@ 2023-05-22 12:10 Horea Christian
0 siblings, 0 replies; 5+ messages in thread
From: Horea Christian @ 2023-05-22 12:10 UTC (permalink / raw
To: gentoo-commits
commit: 15dcbe44fc9963aae2b1e5f4c1cb5fa694878911
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon May 22 12:09:47 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon May 22 12:09:47 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=15dcbe44
dev-python/heudiconv: version bump and test failure comment
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/heudiconv/heudiconv-0.11.6-r1.ebuild | 2 ++
.../{heudiconv-0.11.6-r1.ebuild => heudiconv-0.13.0.ebuild} | 8 ++------
2 files changed, 4 insertions(+), 6 deletions(-)
diff --git a/dev-python/heudiconv/heudiconv-0.11.6-r1.ebuild b/dev-python/heudiconv/heudiconv-0.11.6-r1.ebuild
index 048890f37..8dbfcfa0f 100644
--- a/dev-python/heudiconv/heudiconv-0.11.6-r1.ebuild
+++ b/dev-python/heudiconv/heudiconv-0.11.6-r1.ebuild
@@ -39,6 +39,8 @@ PATCHES=(
"${FILESDIR}/${P}-gitenv.patch"
)
+# Reported upstream:
+# https://github.com/nipy/heudiconv/issues/679
EPYTEST_DESELECT=(
heudiconv/tests/test_main.py::test_prepare_for_datalad
)
diff --git a/dev-python/heudiconv/heudiconv-0.11.6-r1.ebuild b/dev-python/heudiconv/heudiconv-0.13.0.ebuild
similarity index 84%
copy from dev-python/heudiconv/heudiconv-0.11.6-r1.ebuild
copy to dev-python/heudiconv/heudiconv-0.13.0.ebuild
index 048890f37..7f7db0b0e 100644
--- a/dev-python/heudiconv/heudiconv-0.11.6-r1.ebuild
+++ b/dev-python/heudiconv/heudiconv-0.13.0.ebuild
@@ -33,12 +33,8 @@ BDEPEND="
)
"
-# Patch sumbitted upstream, check if removal possible in next release:
-# https://github.com/nipy/heudiconv/pull/631
-PATCHES=(
- "${FILESDIR}/${P}-gitenv.patch"
-)
-
+# Reported upstream:
+# https://github.com/nipy/heudiconv/issues/679
EPYTEST_DESELECT=(
heudiconv/tests/test_main.py::test_prepare_for_datalad
)
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/heudiconv/
@ 2023-12-11 17:43 Horea Christian
0 siblings, 0 replies; 5+ messages in thread
From: Horea Christian @ 2023-12-11 17:43 UTC (permalink / raw
To: gentoo-commits
commit: f879653e3546b00b36d46739a321bbdc7b2c1aaa
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon Dec 11 17:38:20 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon Dec 11 17:38:20 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f879653e
dev-python/heudiconv: drop 0.11.6-r1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/heudiconv/heudiconv-0.11.6-r1.ebuild | 48 -------------------------
1 file changed, 48 deletions(-)
diff --git a/dev-python/heudiconv/heudiconv-0.11.6-r1.ebuild b/dev-python/heudiconv/heudiconv-0.11.6-r1.ebuild
deleted file mode 100644
index 8dbfcfa0f..000000000
--- a/dev-python/heudiconv/heudiconv-0.11.6-r1.ebuild
+++ /dev/null
@@ -1,48 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_{10..11} )
-inherit distutils-r1 pypi
-
-DESCRIPTION="Flexible DICOM conversion to structured directory layouts"
-HOMEPAGE="
- https://github.com/nipy/heudiconv
- https://heudiconv.readthedocs.io/en/latest/
-"
-
-SLOT="0"
-LICENSE="Apache-2.0"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="
- dev-python/filelock[${PYTHON_USEDEP}]
- dev-python/versioningit[${PYTHON_USEDEP}]
- sci-biology/dcm2niix
- sci-biology/dcmstack[${PYTHON_USEDEP}]
- sci-libs/nibabel[${PYTHON_USEDEP}]
- sci-libs/nipype[${PYTHON_USEDEP}]
- sci-libs/pydicom[${PYTHON_USEDEP}]
- "
-BDEPEND="
- test? (
- dev-python/mock[${PYTHON_USEDEP}]
- dev-python/six[${PYTHON_USEDEP}]
- )
-"
-
-# Patch sumbitted upstream, check if removal possible in next release:
-# https://github.com/nipy/heudiconv/pull/631
-PATCHES=(
- "${FILESDIR}/${P}-gitenv.patch"
-)
-
-# Reported upstream:
-# https://github.com/nipy/heudiconv/issues/679
-EPYTEST_DESELECT=(
- heudiconv/tests/test_main.py::test_prepare_for_datalad
-)
-
-distutils_enable_tests pytest
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/heudiconv/
@ 2023-12-11 17:43 Horea Christian
0 siblings, 0 replies; 5+ messages in thread
From: Horea Christian @ 2023-12-11 17:43 UTC (permalink / raw
To: gentoo-commits
commit: 3952b87c7ce8ea2ea7abc2000ac1f314f91921d6
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon Dec 11 17:37:57 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon Dec 11 17:37:57 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3952b87c
dev-python/heudiconv: add 1.0.0
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/heudiconv/heudiconv-1.0.0.ebuild | 42 +++++++++++++++++++++++++++++
1 file changed, 42 insertions(+)
diff --git a/dev-python/heudiconv/heudiconv-1.0.0.ebuild b/dev-python/heudiconv/heudiconv-1.0.0.ebuild
new file mode 100644
index 000000000..7f7db0b0e
--- /dev/null
+++ b/dev-python/heudiconv/heudiconv-1.0.0.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=setuptools
+PYTHON_COMPAT=( python3_{10..11} )
+inherit distutils-r1 pypi
+
+DESCRIPTION="Flexible DICOM conversion to structured directory layouts"
+HOMEPAGE="
+ https://github.com/nipy/heudiconv
+ https://heudiconv.readthedocs.io/en/latest/
+"
+
+SLOT="0"
+LICENSE="Apache-2.0"
+KEYWORDS="~amd64 ~x86"
+
+RDEPEND="
+ dev-python/filelock[${PYTHON_USEDEP}]
+ dev-python/versioningit[${PYTHON_USEDEP}]
+ sci-biology/dcm2niix
+ sci-biology/dcmstack[${PYTHON_USEDEP}]
+ sci-libs/nibabel[${PYTHON_USEDEP}]
+ sci-libs/nipype[${PYTHON_USEDEP}]
+ sci-libs/pydicom[${PYTHON_USEDEP}]
+ "
+BDEPEND="
+ test? (
+ dev-python/mock[${PYTHON_USEDEP}]
+ dev-python/six[${PYTHON_USEDEP}]
+ )
+"
+
+# Reported upstream:
+# https://github.com/nipy/heudiconv/issues/679
+EPYTEST_DESELECT=(
+ heudiconv/tests/test_main.py::test_prepare_for_datalad
+)
+
+distutils_enable_tests pytest
^ permalink raw reply related [flat|nested] 5+ messages in thread
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