* [gentoo-commits] proj/sci:master commit in: sci-biology/clview/
@ 2014-07-04 17:55 Martin Mokrejs
0 siblings, 0 replies; 4+ messages in thread
From: Martin Mokrejs @ 2014-07-04 17:55 UTC (permalink / raw
To: gentoo-commits
commit: 12c7c337f41b67c80e2c20d73e9f50762a721e6c
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Jul 4 17:54:52 2014 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jul 4 17:54:52 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=12c7c337
sci-biology/clview: add dependency on =x11-libs/fox-1.6*
Package-Manager: portage-2.2.7
---
sci-biology/clview/ChangeLog | 6 ++++++
sci-biology/clview/clview-0.1.ebuild | 2 +-
2 files changed, 7 insertions(+), 1 deletion(-)
diff --git a/sci-biology/clview/ChangeLog b/sci-biology/clview/ChangeLog
new file mode 100644
index 0000000..4df0dcf
--- /dev/null
+++ b/sci-biology/clview/ChangeLog
@@ -0,0 +1,6 @@
+# ChangeLog for sci-biology/clview
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+ 04 Jul 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> clview-0.1.ebuild:
+ sci-biology/clview: add dependency on =x11-libs/fox-1.6*
diff --git a/sci-biology/clview/clview-0.1.ebuild b/sci-biology/clview/clview-0.1.ebuild
index 906d2d1..dd43fdf 100644
--- a/sci-biology/clview/clview-0.1.ebuild
+++ b/sci-biology/clview/clview-0.1.ebuild
@@ -64,7 +64,7 @@ SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
-DEPEND="x11-libs/fox"
+DEPEND="=x11-libs/fox-1.6*"
RDEPEND="${DEPEND}"
S=${WORKDIR}
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/clview/
@ 2015-09-22 8:19 Justin Lecher
0 siblings, 0 replies; 4+ messages in thread
From: Justin Lecher @ 2015-09-22 8:19 UTC (permalink / raw
To: gentoo-commits
commit: ad4e0fb9b1c45b26bb5a088625fbe24669de52c0
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Sep 22 07:45:13 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Sep 22 07:45:13 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ad4e0fb9
sci-biology/clview: Bump to EAPI=5
Package-Manager: portage-2.2.21
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/clview/clview-0.1.ebuild | 16 +++++++++-------
1 file changed, 9 insertions(+), 7 deletions(-)
diff --git a/sci-biology/clview/clview-0.1.ebuild b/sci-biology/clview/clview-0.1.ebuild
index b28621e..c8f8124 100644
--- a/sci-biology/clview/clview-0.1.ebuild
+++ b/sci-biology/clview/clview-0.1.ebuild
@@ -1,14 +1,15 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=3
+EAPI=5
DESCRIPTION="clview is an assembly .ace file viewer from TIGR Gene Indices project tools"
HOMEPAGE="http://sourceforge.net/projects/clview"
-SRC_URI="http://sourceforge.net/projects/clview/files/source%20code/clview_src.tar.gz
- ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/clview/clview_src.tar.gz
- ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/clview/clview_linux_i386.tar.gz"
+SRC_URI="
+ http://sourceforge.net/projects/clview/files/source%20code/clview_src.tar.gz
+ ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/clview/clview_src.tar.gz
+ ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/clview/clview_linux_i386.tar.gz"
# the ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/tgi_cpp_library.tar.gz
# contain maybe an older but definitely larger set of .cpp files compared to clview/gcl/
@@ -68,6 +69,7 @@ DEPEND="=x11-libs/fox-1.6*"
RDEPEND="${DEPEND}"
S=${WORKDIR}
+
src_unpack() {
unpack clview_src.tar.gz
}
@@ -98,10 +100,10 @@ src_prepare() {
src_compile(){
cd "${S}"/clview || die
- emake || die
+ emake
}
src_install() {
# install at least the binaries for clview when we cannot compile it
- dobin clview/clview || die "Failed to install clview binary"
+ dobin clview/clview
}
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/clview/
@ 2021-03-06 10:36 Andrew Ammerlaan
0 siblings, 0 replies; 4+ messages in thread
From: Andrew Ammerlaan @ 2021-03-06 10:36 UTC (permalink / raw
To: gentoo-commits
commit: 04e80923acc4d574d348c86d19c3458ce375fe92
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Mar 6 10:33:35 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Mar 6 10:33:35 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=04e80923
sci-biology/clview: EAPI bump
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/clview/clview-0.1.ebuild | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/sci-biology/clview/clview-0.1.ebuild b/sci-biology/clview/clview-0.1.ebuild
index 7b2387dc6..2f200426d 100644
--- a/sci-biology/clview/clview-0.1.ebuild
+++ b/sci-biology/clview/clview-0.1.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
DESCRIPTION="clview is an assembly .ace file viewer from TIGR Gene Indices project tools"
HOMEPAGE="https://sourceforge.net/projects/clview"
@@ -62,7 +62,6 @@ SRC_URI="
LICENSE="Artistic"
SLOT="0"
KEYWORDS="~amd64 ~x86"
-IUSE=""
DEPEND="=x11-libs/fox-1.6*"
RDEPEND="${DEPEND}"
@@ -74,6 +73,7 @@ src_unpack() {
}
src_prepare() {
+ default
# FIXME: we have to run `/usr/bin/fox-config --cflags' to yield
# `-I/usr/include/fox-1.6'
# similarly `fox-config --libs' to yield e.g.
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/clview/
@ 2023-12-11 17:43 Horea Christian
0 siblings, 0 replies; 4+ messages in thread
From: Horea Christian @ 2023-12-11 17:43 UTC (permalink / raw
To: gentoo-commits
commit: 9cc8e30d7ad88065581085af040fa878b2251a1d
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon Dec 11 17:23:24 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon Dec 11 17:23:24 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9cc8e30d
sci-biology/clview: treeclean
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/clview/clview-0.1.ebuild | 108 -----------------------------------
sci-biology/clview/metadata.xml | 15 -----
2 files changed, 123 deletions(-)
diff --git a/sci-biology/clview/clview-0.1.ebuild b/sci-biology/clview/clview-0.1.ebuild
deleted file mode 100644
index 2f200426d..000000000
--- a/sci-biology/clview/clview-0.1.ebuild
+++ /dev/null
@@ -1,108 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-DESCRIPTION="clview is an assembly .ace file viewer from TIGR Gene Indices project tools"
-HOMEPAGE="https://sourceforge.net/projects/clview"
-SRC_URI="
- https://sourceforge.net/projects/clview/files/source%20code/clview_src.tar.gz
- ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/clview/clview_src.tar.gz
- ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/clview/clview_linux_i386.tar.gz"
-
-# the ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/tgi_cpp_library.tar.gz
-# contain maybe an older but definitely larger set of .cpp files compared to clview/gcl/
-# contents. clview compiles against both versions with same warning messages from g++.
-#
-# mokrejs@vrapenec$ ls -la /var/tmp/portage/sci-biology/clview-0.1/work/gclib/
-# total 188
-# drwxr-xr-x 2 mmokrejs mmokrejs 4096 Dec 2 22:23 .
-# drwx------ 5 mmokrejs portage 4096 Dec 2 22:23 ..
-# -rw-r--r-- 1 mmokrejs mmokrejs 11632 Sep 17 2008 AceParser.cpp
-# -rw-r--r-- 1 mmokrejs mmokrejs 906 Sep 14 2008 AceParser.h
-# -rw-r--r-- 1 mmokrejs mmokrejs 32276 Dec 2 22:23 AceParser.o
-# -rw-r--r-- 1 mmokrejs mmokrejs 11012 Jan 22 2009 GBase.cpp
-# -rw-r--r-- 1 mmokrejs mmokrejs 9200 Dec 16 2008 GBase.h
-# -rw-r--r-- 1 mmokrejs mmokrejs 8844 Dec 2 22:23 GBase.o
-# -rw-r--r-- 1 mmokrejs mmokrejs 16813 Jul 29 2008 GHash.hh
-# -rw-r--r-- 1 mmokrejs mmokrejs 16516 Sep 10 2008 GList.hh
-# -rw-r--r-- 1 mmokrejs mmokrejs 11221 Jan 22 2009 LayoutParser.cpp
-# -rw-r--r-- 1 mmokrejs mmokrejs 6246 Sep 14 2008 LayoutParser.h
-# -rw-r--r-- 1 mmokrejs mmokrejs 32956 Dec 2 22:23 LayoutParser.o
-# mokrejs@vrapenec$ ls -la /var/tmp/portage/sci-biology/clview-0.1/work/tgi_cl/gcl/
-# total 268
-# drwxr-xr-x 2 mmokrejs mmokrejs 4096 Nov 18 2008 .
-# drwxr-xr-x 3 mmokrejs mmokrejs 4096 Oct 18 2006 ..
-# -rw-r--r-- 1 mmokrejs mmokrejs 9515 Nov 7 2005 AceParser.cpp
-# -rw-r--r-- 1 mmokrejs mmokrejs 886 Nov 7 2005 AceParser.h
-# -rw-r--r-- 1 mmokrejs mmokrejs 10768 Nov 7 2005 BitHash.hh
-# -rw-r--r-- 1 mmokrejs mmokrejs 7250 Nov 7 2005 GArgs.cpp
-# -rw-r--r-- 1 mmokrejs mmokrejs 2507 Nov 7 2005 GArgs.h
-# -rw-r--r-- 1 mmokrejs mmokrejs 10156 Nov 18 2008 GBase.cpp
-# -rw-r--r-- 1 mmokrejs mmokrejs 8142 Nov 18 2008 GBase.h
-# -rw-r--r-- 1 mmokrejs mmokrejs 14742 Nov 7 2005 GCdbYank.cpp
-# -rw-r--r-- 1 mmokrejs mmokrejs 1831 Nov 7 2005 GCdbYank.h
-# -rw-r--r-- 1 mmokrejs mmokrejs 16723 Nov 7 2005 GFastaFile.h
-# -rw-r--r-- 1 mmokrejs mmokrejs 16245 Nov 7 2005 GHash.hh
-# -rw-r--r-- 1 mmokrejs mmokrejs 15561 Nov 7 2005 GList.hh
-# -rw-r--r-- 1 mmokrejs mmokrejs 28 Nov 7 2005 GReadBuf.cpp
-# -rw-r--r-- 1 mmokrejs mmokrejs 4022 Nov 7 2005 GReadBuf.h
-# -rw-r--r-- 1 mmokrejs mmokrejs 48 Nov 7 2005 GShMem.cpp
-# -rw-r--r-- 1 mmokrejs mmokrejs 4012 Nov 7 2005 GShMem.h
-# -rw-r--r-- 1 mmokrejs mmokrejs 32875 Nov 7 2005 GString.cpp
-# -rw-r--r-- 1 mmokrejs mmokrejs 8453 Nov 7 2005 GString.h
-# -rw-r--r-- 1 mmokrejs mmokrejs 11157 Nov 7 2005 LayoutParser.cpp
-# -rw-r--r-- 1 mmokrejs mmokrejs 6063 Nov 7 2005 LayoutParser.h
-# -rw-r--r-- 1 mmokrejs mmokrejs 20253 Nov 7 2005 gcdb.cpp
-# -rw-r--r-- 1 mmokrejs mmokrejs 6941 Nov 7 2005 gcdb.h
-# -rw-r--r-- 1 mmokrejs mmokrejs 8998 Nov 7 2005 gcompress.cpp
-# -rw-r--r-- 1 mmokrejs mmokrejs 3670 Nov 7 2005 gcompress.h
-#
-
-LICENSE="Artistic"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-DEPEND="=x11-libs/fox-1.6*"
-RDEPEND="${DEPEND}"
-
-S=${WORKDIR}
-
-src_unpack() {
- unpack clview_src.tar.gz
-}
-
-src_prepare() {
- default
- # FIXME: we have to run `/usr/bin/fox-config --cflags' to yield
- # `-I/usr/include/fox-1.6'
- # similarly `fox-config --libs' to yield e.g.
- # `-lFOX-1.6 -lXext -lX11 -lXft -lXrender -lfontconfig -lfreetype -lz -lX11
- # -lXcursor -lXrandr -ldl -lpthread -lrt -ljpeg -lpng -ltiff -lz -lbz2 -lm
- # -lcups -lnsl -lGLU -lGL'
- FOXVERSION=`WANT_FOX="1.6" fox-config --version`
- FOXPREFIX=`WANT_FOX="1.6" fox-config --prefix`
- FOXINCPATH=`WANT_FOX="1.6" fox-config --cflags`
- FOXLIBS=`WANT_FOX="1.6" fox-config --libs`
- einfo "Discovered path to fox ${FOXVERSION} files: ${FOXINCPATH}\n${FOXLIBS}"
-
- sed -i "s#FOXPREFIX = /mylocal/geo#FOXPREFIX = ${FOXPREFIX}#" clview/Makefile || die "Failed to hack FOXPREFIX in clview/Makefile"
- sed -i "s#FOXINCDIR := .*#FOXINCDIR := ${FOXINCPATH}#" clview/Makefile || die "Failed to hack FOXINCDIR in clview/Makefile"
- sed -i "s#-I\${FOXINCDIR}#\${FOXINCDIR}#" clview/Makefile || die "Failed to revert the extra -I we introduced on a previous line to clview/Makefile"
- sed -i "s#FOXLIBDIR := .*#FOXLIBDIR := ${FOXPREFIX}/lib#" clview/Makefile || die "Failed to hack FOXLIBDIR in clview/Makefile"
- sed -i "s#LOADLIBS :=.*#LOADLIBS := ${FOXLIBS}#" clview/Makefile || die "Failed to hack LOADLIBS in clview/Makefile"
- sed -i "s#-I-#-I #" clview/Makefile || die
-
- # see tgi_cl/gcl/
- sed -i "s#TGICLASSDIR := /tucan/geo/src/tgi_cl#TGICLASSDIR := ../gcl#" clview/Makefile || die
-}
-
-src_compile(){
- cd "${S}"/clview || die
- default
-}
-
-src_install() {
- # install at least the binaries for clview when we cannot compile it
- dobin clview/clview
-}
diff --git a/sci-biology/clview/metadata.xml b/sci-biology/clview/metadata.xml
deleted file mode 100644
index 7adf609cd..000000000
--- a/sci-biology/clview/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="sourceforge">clview</remote-id>
- </upstream>
-</pkgmetadata>
^ permalink raw reply related [flat|nested] 4+ messages in thread
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