* [gentoo-commits] repo/gentoo:master commit in: dev-python/pandas/, dev-python/pandas/files/
@ 2019-04-29 15:31 Virgil Dupras
0 siblings, 0 replies; 7+ messages in thread
From: Virgil Dupras @ 2019-04-29 15:31 UTC (permalink / raw
To: gentoo-commits
commit: c8ccaf5a961dfc6d631eba6cdb2fc7f22c1bc651
Author: Virgil Dupras <vdupras <AT> gentoo <DOT> org>
AuthorDate: Mon Apr 29 15:30:39 2019 +0000
Commit: Virgil Dupras <vdupras <AT> gentoo <DOT> org>
CommitDate: Mon Apr 29 15:30:39 2019 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c8ccaf5a
dev-python/pandas: bump to 0.24.2
Also, fix obsolete optional dependencies.
Signed-off-by: Virgil Dupras <vdupras <AT> gentoo.org>
Package-Manager: Portage-2.3.62, Repoman-2.3.11
dev-python/pandas/Manifest | 2 +-
.../files/pandas-0.24.2-skip-broken-test.patch | 15 +++++++++
.../{pandas-0.24.1.ebuild => pandas-0.24.2.ebuild} | 39 ++++++++++------------
3 files changed, 33 insertions(+), 23 deletions(-)
diff --git a/dev-python/pandas/Manifest b/dev-python/pandas/Manifest
index 12e6c6bfc5c..e3e156093df 100644
--- a/dev-python/pandas/Manifest
+++ b/dev-python/pandas/Manifest
@@ -1,4 +1,4 @@
DIST pandas-0.19.1.tar.gz 8360233 BLAKE2B 82611ca1a3e3169ac2d084f4dcd9c4d4d74e9e9c9913a41acad48ae68a208a884dfd877445a7d658a7ff098ef383cedae7e79a4900baa8d56c032ce9aaad96eb SHA512 6451990a7fae8c6db8ab0b014a13b4f1828754d3998f13c17b111f891fb9fd23f8e09b907623096dfa55668c42298eee1373210a9fddb95f56dd7d552b964e6f
DIST pandas-0.23.0.tar.gz 13092442 BLAKE2B e11ae088c9a4be481f516d83797b1b1d5e9c82f7d9fa98f1ea65e3405e33c99e1e1cf7a35f56a21d9dc922c1d0828b4947d9c6189a5f76ad5c1b28618293f9da SHA512 c9dc7bf843e3392b8b1b4d46c6aa6dd12435aa974abc875574a7a8794abe6ea531fa92d8a635153839fd3fef9059d96a4512831b86b1fb6fb69588c8b29a95d6
DIST pandas-0.23.4.tar.gz 10490077 BLAKE2B 28a78860e0aa5de8def7bb529fc98b9121a516b7fd7620e31e000ae14217165e6677ce26b56da0b9c603930ab1304725c644426a135d8f9b2a84921b88f3d23d SHA512 0c89db820a49e0cfb9764e64589ff9af819f9a53c01bd0254cd1b6dbd1e9fd452b2ff7c7330ede7623c7576589113e831a19a57c735562b55f90506df15805b9
-DIST pandas-0.24.1.tar.gz 11832827 BLAKE2B fd30fb736be9ac1e1778d78963ffa33e492fa27a54767c93647cef826cc95459dc97d07a88836554586c9a2db038fb2d897caa8bd1413433f276cffbdb49b1cc SHA512 15f75308f4c437ad0096c3a3d768563b071b3d8e55e1850a5ee0f980f56a9d8d1b9fed9d7707ba43e80052e6c5fea313ac1ad2687935f0ab37a16a68bf64ae19
+DIST pandas-0.24.2.tar.gz 11837693 BLAKE2B 3762e94554a3ae3c803c9a412c5c551c15a9fbf15cb05633f7d1b0ccbfddc646f68f0306666e688a83a4495b0537cea2fec671157f5a63aaa5f9cad6b791261e SHA512 0795c6bb8a47a511853558ea59d371b4540ec175f213cfba4ad2361d6481fea5d3f7074bb4961c32f2f0080a72d7436a9b3706f5cc692074f98d83bfc587fd15
diff --git a/dev-python/pandas/files/pandas-0.24.2-skip-broken-test.patch b/dev-python/pandas/files/pandas-0.24.2-skip-broken-test.patch
new file mode 100644
index 00000000000..dcc61dc0cfd
--- /dev/null
+++ b/dev-python/pandas/files/pandas-0.24.2-skip-broken-test.patch
@@ -0,0 +1,15 @@
+diff --git a/pandas/tests/io/json/test_ujson.py b/pandas/tests/io/json/test_ujson.py
+index 63ba9bc0f..854afecab 100644
+--- a/pandas/tests/io/json/test_ujson.py
++++ b/pandas/tests/io/json/test_ujson.py
+@@ -841,7 +841,9 @@ class TestNumpyJSONTests(object):
+ arr_out = ujson.decode(ujson.encode(arr), numpy=True, dtype=dtype)
+ tm.assert_almost_equal(arr, arr_out)
+
+- def test_0d_array(self):
++ # Segfaulting on gentoo, not sure why. TODO: find why.
++ # Clue: https://github.com/pandas-dev/pandas/issues/22718
++ def xtest_0d_array(self):
+ with pytest.raises(TypeError):
+ ujson.encode(np.array(1))
+
diff --git a/dev-python/pandas/pandas-0.24.1.ebuild b/dev-python/pandas/pandas-0.24.2.ebuild
similarity index 83%
rename from dev-python/pandas/pandas-0.24.1.ebuild
rename to dev-python/pandas/pandas-0.24.2.ebuild
index 2d91244e9f6..98cf5b1e2c5 100644
--- a/dev-python/pandas/pandas-0.24.1.ebuild
+++ b/dev-python/pandas/pandas-0.24.2.ebuild
@@ -23,51 +23,46 @@ RECOMMENDED_DEPEND="
>=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}]
>=dev-python/numexpr-2.1[${PYTHON_USEDEP}]
"
+
+# TODO: add pandas-gbq to the tree
OPTIONAL_DEPEND="
dev-python/beautifulsoup:4[${PYTHON_USEDEP}]
dev-python/blosc[${PYTHON_USEDEP}]
- dev-python/boto[${PYTHON_USEDEP}]
- >=dev-python/google-api-python-client-1.2.0[$(python_gen_usedep python2_7 pypy)]
|| (
dev-python/html5lib[${PYTHON_USEDEP}]
dev-python/lxml[${PYTHON_USEDEP}]
)
- dev-python/httplib2[${PYTHON_USEDEP}]
dev-python/jinja[${PYTHON_USEDEP}]
dev-python/matplotlib[${PYTHON_USEDEP}]
|| (
- >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}]
+ dev-python/openpyxl[${PYTHON_USEDEP}]
dev-python/xlsxwriter[${PYTHON_USEDEP}]
)
>=dev-python/pytables-3.2.1[${PYTHON_USEDEP}]
- dev-python/python-gflags[$(python_gen_usedep python2_7 pypy)]
- dev-python/rpy[${PYTHON_USEDEP}]
- dev-python/setuptools[${PYTHON_USEDEP}]
+ dev-python/s3fs[${PYTHON_USEDEP}]
dev-python/statsmodels[${PYTHON_USEDEP}]
>=dev-python/sqlalchemy-0.8.1[${PYTHON_USEDEP}]
>=dev-python/xarray-0.10.8[${PYTHON_USEDEP}]
- dev-python/xlrd[${PYTHON_USEDEP}]
+ >=dev-python/xlrd-1.0.0[${PYTHON_USEDEP}]
dev-python/xlwt[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]
+ >=sci-libs/scipy-1.1[${PYTHON_USEDEP}]
X? (
|| (
dev-python/PyQt5[${PYTHON_USEDEP}]
dev-python/pygtk[$(python_gen_usedep python2_7)]
- )
- || (
x11-misc/xclip
x11-misc/xsel
)
)
"
COMMON_DEPEND="
- >dev-python/numpy-1.7[${PYTHON_USEDEP}]
- >=dev-python/python-dateutil-2.0[${PYTHON_USEDEP}]
+ >dev-python/numpy-1.13.1[${PYTHON_USEDEP}]
+ dev-python/python-dateutil[${PYTHON_USEDEP}]
dev-python/pytz[${PYTHON_USEDEP}]
"
DEPEND="${COMMON_DEPEND}
dev-python/setuptools[${PYTHON_USEDEP}]
- >=dev-python/cython-0.23[${PYTHON_USEDEP}]
+ dev-python/cython[${PYTHON_USEDEP}]
doc? (
${VIRTUALX_DEPEND}
app-text/pandoc
@@ -77,11 +72,12 @@ DEPEND="${COMMON_DEPEND}
dev-python/lxml[${PYTHON_USEDEP}]
dev-python/matplotlib[${PYTHON_USEDEP}]
dev-python/nbsphinx[${PYTHON_USEDEP}]
+ >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}]
>=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}]
>=dev-python/pytables-3.0.0[${PYTHON_USEDEP}]
dev-python/pytz[${PYTHON_USEDEP}]
dev-python/rpy[${PYTHON_USEDEP}]
- >=dev-python/sphinx-1.2.1[${PYTHON_USEDEP}]
+ dev-python/sphinx[${PYTHON_USEDEP}]
dev-python/xlrd[${PYTHON_USEDEP}]
dev-python/xlwt[${PYTHON_USEDEP}]
sci-libs/scipy[${PYTHON_USEDEP}]
@@ -92,9 +88,11 @@ DEPEND="${COMMON_DEPEND}
${RECOMMENDED_DEPEND}
${OPTIONAL_DEPEND}
dev-python/beautifulsoup:4[${PYTHON_USEDEP}]
+ dev-python/hypothesis[${PYTHON_USEDEP}]
dev-python/nose[${PYTHON_USEDEP}]
dev-python/pymysql[${PYTHON_USEDEP}]
dev-python/pytest[${PYTHON_USEDEP}]
+ dev-python/pytest-mock[${PYTHON_USEDEP}]
dev-python/psycopg:2[${PYTHON_USEDEP}]
x11-misc/xclip
x11-misc/xsel
@@ -103,17 +101,15 @@ DEPEND="${COMMON_DEPEND}
# dev-python/statsmodels invokes a circular dep
# hence rm from doc? ( ), again
RDEPEND="${COMMON_DEPEND}
- !<dev-python/numexpr-2.1[${PYTHON_USEDEP}]
- !~dev-python/openpyxl-1.9.0[${PYTHON_USEDEP}]
!minimal? ( ${RECOMMENDED_DEPEND} )
full-support? ( ${OPTIONAL_DEPEND} )
"
S="${WORKDIR}/${P/_/}"
-#PATCHES=(
-# "${FILESDIR}/${PN}-0.23.4-skip-broken-test.patch"
-#)
+PATCHES=(
+ "${FILESDIR}/${PN}-0.24.2-skip-broken-test.patch"
+)
python_prepare_all() {
# Prevent un-needed download during build
@@ -157,8 +153,7 @@ pkg_postinst() {
optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1"
optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup:4 dev-python/html5lib dev-python/lxml
optfeature "for msgpack compression using blosc" dev-python/blosc
- optfeature "necessary for Amazon S3 access" dev-python/boto
- optfeature "needed for pandas.io.gbq" dev-python/httplib2 dev-python/setuptools dev-python/python-gflags ">=dev-python/google-api-python-client-1.2.0"
+ optfeature "necessary for Amazon S3 access" dev-python/s3fs
optfeature "Template engine for conditional HTML formatting" dev-python/jinja
optfeature "Plotting support" dev-python/matplotlib
optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-1.6.1" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-python/pandas/, dev-python/pandas/files/
@ 2022-01-22 23:40 Michał Górny
0 siblings, 0 replies; 7+ messages in thread
From: Michał Górny @ 2022-01-22 23:40 UTC (permalink / raw
To: gentoo-commits
commit: da559acee5fc0f221e8a837b788f906b5fb3f7d1
Author: Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Sat Jan 22 20:48:57 2022 +0000
Commit: Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Sat Jan 22 23:40:19 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=da559ace
dev-python/pandas: Bump to 1.4.0
Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>
dev-python/pandas/Manifest | 1 +
.../pandas-1.4.0-distutils-hack-assertion.patch | 14 ++
dev-python/pandas/pandas-1.4.0.ebuild | 187 +++++++++++++++++++++
3 files changed, 202 insertions(+)
diff --git a/dev-python/pandas/Manifest b/dev-python/pandas/Manifest
index 250378b0f3da..f9d0d2479f80 100644
--- a/dev-python/pandas/Manifest
+++ b/dev-python/pandas/Manifest
@@ -1,3 +1,4 @@
DIST pandas-1.3.3.tar.gz 4730758 BLAKE2B 0ef945b2181329265b93fbdb7f9c35497ef847508cc2166b6e2a12ad1a2faa3940d5c8f375754ec34db4e236934a1f903f1e58e6882c6de0018a16b38f50f136 SHA512 a3a871a9954c7249311b9904e588d85fba4d6aa07463308b08b789b93a1eb63e36dac1b0d4254a5379085c05c5633ef31b615d0c60963c796dd7a33d815a5534
DIST pandas-1.3.4.tar.gz 4734599 BLAKE2B a71b5b57198defcf4f6d848f445c7112668994f089b62a6bce1028ab4ba8a9bf3adc3c393699332fb0c76818ed80164843114e68e57232c495cee03ec5e88009 SHA512 c821365b1f06d69c61b957c4768a5f86b39d97d74b0732ea0eaade9d21bca8f652e38f91f83adf2fc6488f227c75d4e5e64e8f131456e7f0a93ecfcf237190a6
DIST pandas-1.3.5.tar.gz 4736591 BLAKE2B 7c7de1485028d7c610c5a23ca1cc98551b24e824b609b7a624469f2471bb8d3984a25db48ab7413aa7cdd0057c5c5c9f1eb2b59cfc5cbf6d30177e12e2acc7b3 SHA512 cf3f76894cae19784af6393d4a575d114b55621a3d594edd7e95ac6d5c8588a580135789c859c618acfeceeb710d2a1fdd94188a839a90be6b58af929e00a726
+DIST pandas-1.4.0.tar.gz 4935046 BLAKE2B f579abe78812d9c155c2d08708f6b46ac7363d351a750cc5b2017aa641f5307ae0baa7de57866dbefe74790133d2219d6742cb6f015f8a360365cf30345a0b44 SHA512 800909c4e80ab50391e22bf67ccd78532730e200bc58ffc32d4a6b9e37522a90e2ed486a02f67a4df1e28fa531c075e0caadc2c8a06b8a06c7f2ef466a371489
diff --git a/dev-python/pandas/files/pandas-1.4.0-distutils-hack-assertion.patch b/dev-python/pandas/files/pandas-1.4.0-distutils-hack-assertion.patch
new file mode 100644
index 000000000000..4842de94311f
--- /dev/null
+++ b/dev-python/pandas/files/pandas-1.4.0-distutils-hack-assertion.patch
@@ -0,0 +1,14 @@
+diff --git a/pandas/util/_print_versions.py b/pandas/util/_print_versions.py
+index 289900c473..91d518d1ab 100644
+--- a/pandas/util/_print_versions.py
++++ b/pandas/util/_print_versions.py
+@@ -60,8 +60,8 @@ def _get_dependency_info() -> dict[str, JSONSerializable]:
+ "pytz",
+ "dateutil",
+ # install / build,
+- "pip",
+ "setuptools",
++ "pip",
+ "Cython",
+ # test
+ "pytest",
diff --git a/dev-python/pandas/pandas-1.4.0.ebuild b/dev-python/pandas/pandas-1.4.0.ebuild
new file mode 100644
index 000000000000..922f3eec3723
--- /dev/null
+++ b/dev-python/pandas/pandas-1.4.0.ebuild
@@ -0,0 +1,187 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=setuptools
+PYTHON_COMPAT=( python3_{8..10} )
+PYTHON_REQ_USE="threads(+)"
+
+VIRTUALX_REQUIRED="manual"
+
+inherit distutils-r1 multiprocessing optfeature virtualx
+
+DESCRIPTION="Powerful data structures for data analysis and statistics"
+HOMEPAGE="https://pandas.pydata.org/ https://github.com/pandas-dev/pandas/"
+SRC_URI="
+ https://github.com/pandas-dev/pandas/releases/download/v${PV}/${P}.tar.gz"
+S="${WORKDIR}/${P/_/}"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc ~ppc64 ~riscv ~s390 ~x86"
+IUSE="doc full-support minimal test X"
+RESTRICT="!test? ( test )"
+
+RECOMMENDED_DEPEND="
+ >=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}]
+ >=dev-python/numexpr-2.7.0[${PYTHON_USEDEP}]
+"
+
+# TODO: add pandas-gbq to the tree
+OPTIONAL_DEPEND="
+ dev-python/beautifulsoup4[${PYTHON_USEDEP}]
+ dev-python/blosc[${PYTHON_USEDEP}]
+ || (
+ dev-python/html5lib[${PYTHON_USEDEP}]
+ dev-python/lxml[${PYTHON_USEDEP}]
+ )
+ dev-python/jinja[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ || (
+ dev-python/openpyxl[${PYTHON_USEDEP}]
+ dev-python/xlsxwriter[${PYTHON_USEDEP}]
+ )
+ >=dev-python/pytables-3.2.1[${PYTHON_USEDEP}]
+ >=dev-python/xarray-0.12.3[${PYTHON_USEDEP}]
+ >=dev-python/sqlalchemy-1.3.0[${PYTHON_USEDEP}]
+ >=dev-python/xlrd-1.2.0[${PYTHON_USEDEP}]
+ >=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}]
+ !hppa? (
+ dev-python/statsmodels[${PYTHON_USEDEP}]
+ >=dev-python/scipy-1.1[${PYTHON_USEDEP}]
+ )
+ X? (
+ || (
+ dev-python/PyQt5[${PYTHON_USEDEP}]
+ x11-misc/xclip
+ x11-misc/xsel
+ )
+ )
+"
+COMMON_DEPEND="
+ >=dev-python/numpy-1.21.0[${PYTHON_USEDEP}]
+ >=dev-python/python-dateutil-2.8.1-r3[${PYTHON_USEDEP}]
+ >=dev-python/pytz-2020.1[${PYTHON_USEDEP}]
+"
+DEPEND="${COMMON_DEPEND}
+ >=dev-python/cython-0.29.24[${PYTHON_USEDEP}]
+ doc? (
+ ${VIRTUALX_DEPEND}
+ app-text/pandoc
+ dev-python/beautifulsoup4[${PYTHON_USEDEP}]
+ dev-python/html5lib[${PYTHON_USEDEP}]
+ dev-python/ipython[${PYTHON_USEDEP}]
+ dev-python/lxml[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ dev-python/nbsphinx[${PYTHON_USEDEP}]
+ >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}]
+ >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}]
+ >=dev-python/pytables-3.0.0[${PYTHON_USEDEP}]
+ dev-python/pytz[${PYTHON_USEDEP}]
+ dev-python/rpy[${PYTHON_USEDEP}]
+ dev-python/sphinx[${PYTHON_USEDEP}]
+ dev-python/xlrd[${PYTHON_USEDEP}]
+ dev-python/xlwt[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
+ x11-misc/xclip
+ )
+ test? (
+ ${VIRTUALX_DEPEND}
+ ${RECOMMENDED_DEPEND}
+ ${OPTIONAL_DEPEND}
+ dev-python/beautifulsoup4[${PYTHON_USEDEP}]
+ >=dev-python/hypothesis-5.5.3[${PYTHON_USEDEP}]
+ dev-python/openpyxl[${PYTHON_USEDEP}]
+ dev-python/pymysql[${PYTHON_USEDEP}]
+ >=dev-python/pytest-6[${PYTHON_USEDEP}]
+ >=dev-python/pytest-xdist-1.31[${PYTHON_USEDEP}]
+ dev-python/psycopg:2[${PYTHON_USEDEP}]
+ dev-python/xlsxwriter[${PYTHON_USEDEP}]
+ x11-misc/xclip
+ x11-misc/xsel
+ )
+"
+# dev-python/statsmodels invokes a circular dep
+# hence rm from doc? ( ), again
+RDEPEND="${COMMON_DEPEND}
+ !minimal? ( ${RECOMMENDED_DEPEND} )
+ full-support? ( ${OPTIONAL_DEPEND} )
+"
+
+python_prepare_all() {
+ local PATCHES=(
+ # https://github.com/pandas-dev/pandas/issues/44980
+ "${FILESDIR}"/${P}-distutils-hack-assertion.patch
+ )
+
+ # Prevent un-needed download during build
+ sed -e "/^ 'sphinx.ext.intersphinx',/d" \
+ -i doc/source/conf.py || die
+
+ # requires package installed
+ sed -e '/extra_compile_args =/s:"-Werror"::' \
+ -i setup.py || die
+
+ distutils-r1_python_prepare_all
+}
+
+python_compile() {
+ distutils-r1_python_compile -j1
+}
+
+python_compile_all() {
+ # To build docs the need be located in $BUILD_DIR,
+ # else PYTHONPATH points to unusable modules.
+ if use doc; then
+ cd "${BUILD_DIR}"/lib || die
+ cp -ar "${S}"/doc . && cd doc || die
+ LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html
+ fi
+}
+
+python_test() {
+ local EPYTEST_DESELECT=(
+ # test for rounding errors, fails if we have better precision
+ # e.g. on amd64 with FMA or on arm64
+ # https://github.com/pandas-dev/pandas/issues/38921
+ pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues
+
+ # TODO
+ pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated
+ pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated_direct
+ )
+
+ local -x LC_ALL=C.UTF-8
+ cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
+ "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
+ virtx epytest pandas --skip-slow --skip-network -m "not single" \
+ -n "$(makeopts_jobs "${MAKEOPTS}" "$(get_nproc)")"
+}
+
+python_install_all() {
+ if use doc; then
+ dodoc -r "${BUILD_DIR}"/lib/doc/build/html
+ einfo "An initial build of docs is absent of references to statsmodels"
+ einfo "due to circular dependency. To have them included, emerge"
+ einfo "statsmodels next and re-emerge pandas with USE doc"
+ fi
+
+ distutils-r1_python_install_all
+}
+
+pkg_postinst() {
+ optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
+ optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1"
+ optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml
+ optfeature "for msgpack compression using blosc" dev-python/blosc
+ optfeature "Template engine for conditional HTML formatting" dev-python/jinja
+ optfeature "Plotting support" dev-python/matplotlib
+ optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.0" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
+ optfeature "necessary for HDF5-based storage" ">=dev-python/pytables-3.2.1"
+ optfeature "R I/O support" dev-python/rpy
+ optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
+ optfeature "SQL database support" ">=dev-python/sqlalchemy-1.3.0"
+ optfeature "miscellaneous statistical functions" dev-python/scipy
+ optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel
+}
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-python/pandas/, dev-python/pandas/files/
@ 2022-03-12 19:49 Michał Górny
0 siblings, 0 replies; 7+ messages in thread
From: Michał Górny @ 2022-03-12 19:49 UTC (permalink / raw
To: gentoo-commits
commit: 6c2867c19504b862d1e3b702b246f4f6e2a74609
Author: Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Sat Mar 12 19:48:34 2022 +0000
Commit: Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Sat Mar 12 19:48:34 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6c2867c1
dev-python/pandas: Remove old
Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>
dev-python/pandas/Manifest | 4 -
.../pandas/files/pandas-1.3.4-arm-tests.patch | 21 ---
dev-python/pandas/pandas-1.3.3.ebuild | 192 -------------------
dev-python/pandas/pandas-1.3.4.ebuild | 203 ---------------------
dev-python/pandas/pandas-1.3.5.ebuild | 198 --------------------
dev-python/pandas/pandas-1.4.0.ebuild | 192 -------------------
6 files changed, 810 deletions(-)
diff --git a/dev-python/pandas/Manifest b/dev-python/pandas/Manifest
index 02dc11a49026..d7a58f4e67ea 100644
--- a/dev-python/pandas/Manifest
+++ b/dev-python/pandas/Manifest
@@ -1,5 +1 @@
-DIST pandas-1.3.3.tar.gz 4730758 BLAKE2B 0ef945b2181329265b93fbdb7f9c35497ef847508cc2166b6e2a12ad1a2faa3940d5c8f375754ec34db4e236934a1f903f1e58e6882c6de0018a16b38f50f136 SHA512 a3a871a9954c7249311b9904e588d85fba4d6aa07463308b08b789b93a1eb63e36dac1b0d4254a5379085c05c5633ef31b615d0c60963c796dd7a33d815a5534
-DIST pandas-1.3.4.tar.gz 4734599 BLAKE2B a71b5b57198defcf4f6d848f445c7112668994f089b62a6bce1028ab4ba8a9bf3adc3c393699332fb0c76818ed80164843114e68e57232c495cee03ec5e88009 SHA512 c821365b1f06d69c61b957c4768a5f86b39d97d74b0732ea0eaade9d21bca8f652e38f91f83adf2fc6488f227c75d4e5e64e8f131456e7f0a93ecfcf237190a6
-DIST pandas-1.3.5.tar.gz 4736591 BLAKE2B 7c7de1485028d7c610c5a23ca1cc98551b24e824b609b7a624469f2471bb8d3984a25db48ab7413aa7cdd0057c5c5c9f1eb2b59cfc5cbf6d30177e12e2acc7b3 SHA512 cf3f76894cae19784af6393d4a575d114b55621a3d594edd7e95ac6d5c8588a580135789c859c618acfeceeb710d2a1fdd94188a839a90be6b58af929e00a726
-DIST pandas-1.4.0.tar.gz 4935046 BLAKE2B f579abe78812d9c155c2d08708f6b46ac7363d351a750cc5b2017aa641f5307ae0baa7de57866dbefe74790133d2219d6742cb6f015f8a360365cf30345a0b44 SHA512 800909c4e80ab50391e22bf67ccd78532730e200bc58ffc32d4a6b9e37522a90e2ed486a02f67a4df1e28fa531c075e0caadc2c8a06b8a06c7f2ef466a371489
DIST pandas-1.4.1.tar.gz 4941369 BLAKE2B ce85253b32c3be6baad74e2bca98d24b43f42c311ffad128615b711e461a76067035e238cf1693eed12d4ca8e354aef56f711e45cd934a4af6222f4727838b1e SHA512 2d8ba8f3152b5bd5495e406ce21d896342ef77473ed3c0207f77b6503c3f4353bbeb5ec573696eb6748e65e956d9d1b97d314a136104151ecb5ba822afa72422
diff --git a/dev-python/pandas/files/pandas-1.3.4-arm-tests.patch b/dev-python/pandas/files/pandas-1.3.4-arm-tests.patch
deleted file mode 100644
index c30d10460b63..000000000000
--- a/dev-python/pandas/files/pandas-1.3.4-arm-tests.patch
+++ /dev/null
@@ -1,21 +0,0 @@
-https://bugs.gentoo.org/818964
-https://github.com/pandas-dev/pandas/commit/b0992ee2f4653c7d70ddbad6f2d172a4ef0bda32
-
-From: Sam James <sam@cmpct.info>
-Date: Fri, 29 Oct 2021 17:24:01 +0100
-Subject: [PATCH] Update is_platform_arm() to detect 32-bit arm and other
- variants (#44225)
-
---- a/pandas/compat/__init__.py
-+++ b/pandas/compat/__init__.py
-@@ -99,7 +99,9 @@ def is_platform_arm() -> bool:
- bool
- True if the running platform uses ARM architecture.
- """
-- return platform.machine() in ("arm64", "aarch64")
-+ return platform.machine() in ("arm64", "aarch64") or platform.machine().startswith(
-+ "armv"
-+ )
-
-
- def import_lzma():
diff --git a/dev-python/pandas/pandas-1.3.3.ebuild b/dev-python/pandas/pandas-1.3.3.ebuild
deleted file mode 100644
index 4ad32fd08453..000000000000
--- a/dev-python/pandas/pandas-1.3.3.ebuild
+++ /dev/null
@@ -1,192 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{8..10} )
-PYTHON_REQ_USE="threads(+)"
-
-VIRTUALX_REQUIRED="manual"
-
-inherit distutils-r1 multiprocessing optfeature virtualx
-
-DESCRIPTION="Powerful data structures for data analysis and statistics"
-HOMEPAGE="https://pandas.pydata.org/ https://github.com/pandas-dev/pandas/"
-SRC_URI="
- https://github.com/pandas-dev/pandas/releases/download/v${PV}/${P}.tar.gz"
-S="${WORKDIR}/${P/_/}"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="amd64 arm arm64 ppc ppc64 ~riscv ~s390 x86"
-IUSE="doc full-support minimal test X"
-RESTRICT="!test? ( test )"
-
-RECOMMENDED_DEPEND="
- >=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}]
- >=dev-python/numexpr-2.7.0[${PYTHON_USEDEP}]
-"
-
-# TODO: add pandas-gbq to the tree
-OPTIONAL_DEPEND="
- dev-python/beautifulsoup4[${PYTHON_USEDEP}]
- dev-python/blosc[${PYTHON_USEDEP}]
- || (
- dev-python/html5lib[${PYTHON_USEDEP}]
- dev-python/lxml[${PYTHON_USEDEP}]
- )
- dev-python/jinja[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- || (
- dev-python/openpyxl[${PYTHON_USEDEP}]
- dev-python/xlsxwriter[${PYTHON_USEDEP}]
- )
- >=dev-python/pytables-3.2.1[${PYTHON_USEDEP}]
- dev-python/statsmodels[${PYTHON_USEDEP}]
- >=dev-python/xarray-0.12.3[${PYTHON_USEDEP}]
- >=dev-python/sqlalchemy-1.3.0[${PYTHON_USEDEP}]
- >=dev-python/xlrd-1.2.0[${PYTHON_USEDEP}]
- >=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}]
- >=dev-python/scipy-1.1[${PYTHON_USEDEP}]
- X? (
- || (
- dev-python/PyQt5[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
- )
-"
-COMMON_DEPEND="
- >=dev-python/numpy-1.17.3[${PYTHON_USEDEP}]
- >=dev-python/python-dateutil-2.8.1-r3[${PYTHON_USEDEP}]
- >=dev-python/pytz-2017.3[${PYTHON_USEDEP}]
-"
-DEPEND="${COMMON_DEPEND}
- >=dev-python/cython-0.29.21[${PYTHON_USEDEP}]
- doc? (
- ${VIRTUALX_DEPEND}
- app-text/pandoc
- dev-python/beautifulsoup4[${PYTHON_USEDEP}]
- dev-python/html5lib[${PYTHON_USEDEP}]
- dev-python/ipython[${PYTHON_USEDEP}]
- dev-python/lxml[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- dev-python/nbsphinx[${PYTHON_USEDEP}]
- >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}]
- >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}]
- >=dev-python/pytables-3.0.0[${PYTHON_USEDEP}]
- dev-python/pytz[${PYTHON_USEDEP}]
- dev-python/rpy[${PYTHON_USEDEP}]
- dev-python/sphinx[${PYTHON_USEDEP}]
- dev-python/xlrd[${PYTHON_USEDEP}]
- dev-python/xlwt[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]
- x11-misc/xclip
- )
- test? (
- ${VIRTUALX_DEPEND}
- ${RECOMMENDED_DEPEND}
- ${OPTIONAL_DEPEND}
- dev-python/beautifulsoup4[${PYTHON_USEDEP}]
- dev-python/hypothesis[${PYTHON_USEDEP}]
- dev-python/openpyxl[${PYTHON_USEDEP}]
- dev-python/pymysql[${PYTHON_USEDEP}]
- >=dev-python/pytest-6[${PYTHON_USEDEP}]
- dev-python/pytest-xdist[${PYTHON_USEDEP}]
- dev-python/psycopg:2[${PYTHON_USEDEP}]
- dev-python/xlsxwriter[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
-"
-# dev-python/statsmodels invokes a circular dep
-# hence rm from doc? ( ), again
-RDEPEND="${COMMON_DEPEND}
- !minimal? ( ${RECOMMENDED_DEPEND} )
- full-support? ( ${OPTIONAL_DEPEND} )
-"
-
-python_prepare_all() {
- # Prevent un-needed download during build
- sed -e "/^ 'sphinx.ext.intersphinx',/d" \
- -i doc/source/conf.py || die
-
- # requires package installed
- sed -e '/extra_compile_args =/s:"-Werror"::' \
- -i setup.py || die
-
- distutils-r1_python_prepare_all
-}
-
-python_compile() {
- distutils-r1_python_compile -j1
-}
-
-python_compile_all() {
- # To build docs the need be located in $BUILD_DIR,
- # else PYTHONPATH points to unusable modules.
- if use doc; then
- cd "${BUILD_DIR}"/lib || die
- cp -ar "${S}"/doc . && cd doc || die
- LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html
- fi
-}
-
-python_test() {
- local deselect=(
- # test for rounding errors, fails if we have better precision
- # e.g. on amd64 with FMA or on arm64
- # https://github.com/pandas-dev/pandas/issues/38921
- pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues
-
- # weird issue, doesn't seem very important
- 'pandas/tests/base/test_misc.py::test_memory_usage[series-with-empty-index]'
-
- # old psycopg2 API
- pandas/tests/tools/test_to_datetime.py::TestToDatetime::test_to_datetime_tz_psycopg2
-
- # Internet
- pandas/tests/io/xml/test_xml.py::test_wrong_url
-
- # TODO: some data path problems?
- pandas/tests/io/test_fsspec.py::test_read_csv
- pandas/tests/io/test_fsspec.py::test_markdown_options
- )
-
- local -x LC_ALL=C.UTF-8
- pushd "${BUILD_DIR}"/lib > /dev/null || die
- "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
- PYTHONPATH=. virtx epytest pandas --skip-slow --skip-network \
- ${deselect[@]/#/--deselect } -m "not single" \
- -n "$(makeopts_jobs "${MAKEOPTS}" "$(get_nproc)")"
- find . '(' -name .pytest_cache -o -name .hypothesis ')' \
- -exec rm -r {} + || die
- popd > /dev/null || die
-}
-
-python_install_all() {
- if use doc; then
- dodoc -r "${BUILD_DIR}"/lib/doc/build/html
- einfo "An initial build of docs is absent of references to statsmodels"
- einfo "due to circular dependency. To have them included, emerge"
- einfo "statsmodels next and re-emerge pandas with USE doc"
- fi
-
- distutils-r1_python_install_all
-}
-
-pkg_postinst() {
- optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
- optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1"
- optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml
- optfeature "for msgpack compression using blosc" dev-python/blosc
- optfeature "Template engine for conditional HTML formatting" dev-python/jinja
- optfeature "Plotting support" dev-python/matplotlib
- optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.0" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
- optfeature "necessary for HDF5-based storage" ">=dev-python/pytables-3.2.1"
- optfeature "R I/O support" dev-python/rpy
- optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
- optfeature "SQL database support" ">=dev-python/sqlalchemy-1.3.0"
- optfeature "miscellaneous statistical functions" dev-python/scipy
- optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel
-}
diff --git a/dev-python/pandas/pandas-1.3.4.ebuild b/dev-python/pandas/pandas-1.3.4.ebuild
deleted file mode 100644
index a4c1bb06f8ec..000000000000
--- a/dev-python/pandas/pandas-1.3.4.ebuild
+++ /dev/null
@@ -1,203 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{8..10} )
-PYTHON_REQ_USE="threads(+)"
-
-VIRTUALX_REQUIRED="manual"
-
-inherit distutils-r1 multiprocessing optfeature virtualx
-
-DESCRIPTION="Powerful data structures for data analysis and statistics"
-HOMEPAGE="https://pandas.pydata.org/ https://github.com/pandas-dev/pandas/"
-SRC_URI="
- https://github.com/pandas-dev/pandas/releases/download/v${PV}/${P}.tar.gz"
-S="${WORKDIR}/${P/_/}"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="amd64 ~arm arm64 ~hppa ~ia64 ~ppc ~ppc64 ~riscv ~s390 ~x86"
-IUSE="doc full-support minimal test X"
-RESTRICT="!test? ( test )"
-
-RECOMMENDED_DEPEND="
- >=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}]
- >=dev-python/numexpr-2.7.0[${PYTHON_USEDEP}]
-"
-
-# TODO: add pandas-gbq to the tree
-OPTIONAL_DEPEND="
- dev-python/beautifulsoup4[${PYTHON_USEDEP}]
- dev-python/blosc[${PYTHON_USEDEP}]
- || (
- dev-python/html5lib[${PYTHON_USEDEP}]
- dev-python/lxml[${PYTHON_USEDEP}]
- )
- dev-python/jinja[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- || (
- dev-python/openpyxl[${PYTHON_USEDEP}]
- dev-python/xlsxwriter[${PYTHON_USEDEP}]
- )
- >=dev-python/pytables-3.2.1[${PYTHON_USEDEP}]
- >=dev-python/xarray-0.12.3[${PYTHON_USEDEP}]
- >=dev-python/sqlalchemy-1.3.0[${PYTHON_USEDEP}]
- >=dev-python/xlrd-1.2.0[${PYTHON_USEDEP}]
- >=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}]
- !hppa? (
- dev-python/statsmodels[${PYTHON_USEDEP}]
- >=dev-python/scipy-1.1[${PYTHON_USEDEP}]
- )
- X? (
- || (
- dev-python/PyQt5[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
- )
-"
-COMMON_DEPEND="
- >=dev-python/numpy-1.17.3[${PYTHON_USEDEP}]
- >=dev-python/python-dateutil-2.8.1-r3[${PYTHON_USEDEP}]
- >=dev-python/pytz-2017.3[${PYTHON_USEDEP}]
-"
-DEPEND="${COMMON_DEPEND}
- >=dev-python/cython-0.29.21[${PYTHON_USEDEP}]
- doc? (
- ${VIRTUALX_DEPEND}
- app-text/pandoc
- dev-python/beautifulsoup4[${PYTHON_USEDEP}]
- dev-python/html5lib[${PYTHON_USEDEP}]
- dev-python/ipython[${PYTHON_USEDEP}]
- dev-python/lxml[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- dev-python/nbsphinx[${PYTHON_USEDEP}]
- >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}]
- >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}]
- >=dev-python/pytables-3.0.0[${PYTHON_USEDEP}]
- dev-python/pytz[${PYTHON_USEDEP}]
- dev-python/rpy[${PYTHON_USEDEP}]
- dev-python/sphinx[${PYTHON_USEDEP}]
- dev-python/xlrd[${PYTHON_USEDEP}]
- dev-python/xlwt[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]
- x11-misc/xclip
- )
- test? (
- ${VIRTUALX_DEPEND}
- ${RECOMMENDED_DEPEND}
- ${OPTIONAL_DEPEND}
- dev-python/beautifulsoup4[${PYTHON_USEDEP}]
- dev-python/hypothesis[${PYTHON_USEDEP}]
- dev-python/openpyxl[${PYTHON_USEDEP}]
- dev-python/pymysql[${PYTHON_USEDEP}]
- >=dev-python/pytest-6[${PYTHON_USEDEP}]
- dev-python/pytest-xdist[${PYTHON_USEDEP}]
- dev-python/psycopg:2[${PYTHON_USEDEP}]
- dev-python/xlsxwriter[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
-"
-# dev-python/statsmodels invokes a circular dep
-# hence rm from doc? ( ), again
-RDEPEND="${COMMON_DEPEND}
- !minimal? ( ${RECOMMENDED_DEPEND} )
- full-support? ( ${OPTIONAL_DEPEND} )
-"
-
-PATCHES=(
- # Upstream patch to fix 32-bit ARM test detection
- "${FILESDIR}"/${P}-arm-tests.patch
-)
-
-python_prepare_all() {
- # Prevent un-needed download during build
- sed -e "/^ 'sphinx.ext.intersphinx',/d" \
- -i doc/source/conf.py || die
-
- # requires package installed
- sed -e '/extra_compile_args =/s:"-Werror"::' \
- -i setup.py || die
-
- distutils-r1_python_prepare_all
-}
-
-python_compile() {
- distutils-r1_python_compile -j1
-}
-
-python_compile_all() {
- # To build docs the need be located in $BUILD_DIR,
- # else PYTHONPATH points to unusable modules.
- if use doc; then
- cd "${BUILD_DIR}"/lib || die
- cp -ar "${S}"/doc . && cd doc || die
- LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html
- fi
-}
-
-python_test() {
- local deselect=(
- # test for rounding errors, fails if we have better precision
- # e.g. on amd64 with FMA or on arm64
- # https://github.com/pandas-dev/pandas/issues/38921
- pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues
-
- # weird issue, doesn't seem very important
- 'pandas/tests/base/test_misc.py::test_memory_usage[series-with-empty-index]'
-
- # old psycopg2 API
- pandas/tests/tools/test_to_datetime.py::TestToDatetime::test_to_datetime_tz_psycopg2
-
- # Internet
- pandas/tests/io/xml/test_xml.py::test_wrong_url
-
- # TODO: some data path problems?
- pandas/tests/io/test_fsspec.py::test_read_csv
- pandas/tests/io/test_fsspec.py::test_markdown_options
-
- # Broken by Python changes
- # https://github.com/pandas-dev/pandas/issues/44420
- pandas/tests/io/parser/test_quoting.py::test_bad_quote_char
- )
-
- local -x LC_ALL=C.UTF-8
- pushd "${BUILD_DIR}"/lib > /dev/null || die
- "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
- PYTHONPATH=. virtx epytest pandas --skip-slow --skip-network \
- ${deselect[@]/#/--deselect } -m "not single" \
- -n "$(makeopts_jobs "${MAKEOPTS}" "$(get_nproc)")"
- find . '(' -name .pytest_cache -o -name .hypothesis ')' \
- -exec rm -r {} + || die
- popd > /dev/null || die
-}
-
-python_install_all() {
- if use doc; then
- dodoc -r "${BUILD_DIR}"/lib/doc/build/html
- einfo "An initial build of docs is absent of references to statsmodels"
- einfo "due to circular dependency. To have them included, emerge"
- einfo "statsmodels next and re-emerge pandas with USE doc"
- fi
-
- distutils-r1_python_install_all
-}
-
-pkg_postinst() {
- optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
- optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1"
- optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml
- optfeature "for msgpack compression using blosc" dev-python/blosc
- optfeature "Template engine for conditional HTML formatting" dev-python/jinja
- optfeature "Plotting support" dev-python/matplotlib
- optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.0" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
- optfeature "necessary for HDF5-based storage" ">=dev-python/pytables-3.2.1"
- optfeature "R I/O support" dev-python/rpy
- optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
- optfeature "SQL database support" ">=dev-python/sqlalchemy-1.3.0"
- optfeature "miscellaneous statistical functions" dev-python/scipy
- optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel
-}
diff --git a/dev-python/pandas/pandas-1.3.5.ebuild b/dev-python/pandas/pandas-1.3.5.ebuild
deleted file mode 100644
index a6bcc482fdc3..000000000000
--- a/dev-python/pandas/pandas-1.3.5.ebuild
+++ /dev/null
@@ -1,198 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{8..10} )
-PYTHON_REQ_USE="threads(+)"
-
-VIRTUALX_REQUIRED="manual"
-
-inherit distutils-r1 multiprocessing optfeature virtualx
-
-DESCRIPTION="Powerful data structures for data analysis and statistics"
-HOMEPAGE="https://pandas.pydata.org/ https://github.com/pandas-dev/pandas/"
-SRC_URI="
- https://github.com/pandas-dev/pandas/releases/download/v${PV}/${P}.tar.gz"
-S="${WORKDIR}/${P/_/}"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="amd64 arm arm64 ~hppa ~ia64 ppc ~ppc64 ~riscv ~s390 x86"
-IUSE="doc full-support minimal test X"
-RESTRICT="!test? ( test )"
-
-RECOMMENDED_DEPEND="
- >=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}]
- >=dev-python/numexpr-2.7.0[${PYTHON_USEDEP}]
-"
-
-# TODO: add pandas-gbq to the tree
-OPTIONAL_DEPEND="
- dev-python/beautifulsoup4[${PYTHON_USEDEP}]
- dev-python/blosc[${PYTHON_USEDEP}]
- || (
- dev-python/html5lib[${PYTHON_USEDEP}]
- dev-python/lxml[${PYTHON_USEDEP}]
- )
- dev-python/jinja[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- || (
- dev-python/openpyxl[${PYTHON_USEDEP}]
- dev-python/xlsxwriter[${PYTHON_USEDEP}]
- )
- >=dev-python/pytables-3.2.1[${PYTHON_USEDEP}]
- >=dev-python/xarray-0.12.3[${PYTHON_USEDEP}]
- >=dev-python/sqlalchemy-1.3.0[${PYTHON_USEDEP}]
- >=dev-python/xlrd-1.2.0[${PYTHON_USEDEP}]
- >=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}]
- !hppa? (
- dev-python/statsmodels[${PYTHON_USEDEP}]
- >=dev-python/scipy-1.1[${PYTHON_USEDEP}]
- )
- X? (
- || (
- dev-python/PyQt5[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
- )
-"
-COMMON_DEPEND="
- >=dev-python/numpy-1.17.3[${PYTHON_USEDEP}]
- >=dev-python/python-dateutil-2.8.1-r3[${PYTHON_USEDEP}]
- >=dev-python/pytz-2017.3[${PYTHON_USEDEP}]
-"
-DEPEND="${COMMON_DEPEND}
- >=dev-python/cython-0.29.21[${PYTHON_USEDEP}]
- doc? (
- ${VIRTUALX_DEPEND}
- app-text/pandoc
- dev-python/beautifulsoup4[${PYTHON_USEDEP}]
- dev-python/html5lib[${PYTHON_USEDEP}]
- dev-python/ipython[${PYTHON_USEDEP}]
- dev-python/lxml[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- dev-python/nbsphinx[${PYTHON_USEDEP}]
- >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}]
- >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}]
- >=dev-python/pytables-3.0.0[${PYTHON_USEDEP}]
- dev-python/pytz[${PYTHON_USEDEP}]
- dev-python/rpy[${PYTHON_USEDEP}]
- dev-python/sphinx[${PYTHON_USEDEP}]
- dev-python/xlrd[${PYTHON_USEDEP}]
- dev-python/xlwt[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]
- x11-misc/xclip
- )
- test? (
- ${VIRTUALX_DEPEND}
- ${RECOMMENDED_DEPEND}
- ${OPTIONAL_DEPEND}
- dev-python/beautifulsoup4[${PYTHON_USEDEP}]
- dev-python/hypothesis[${PYTHON_USEDEP}]
- dev-python/openpyxl[${PYTHON_USEDEP}]
- dev-python/pymysql[${PYTHON_USEDEP}]
- >=dev-python/pytest-6[${PYTHON_USEDEP}]
- dev-python/pytest-xdist[${PYTHON_USEDEP}]
- dev-python/psycopg:2[${PYTHON_USEDEP}]
- dev-python/xlsxwriter[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
-"
-# dev-python/statsmodels invokes a circular dep
-# hence rm from doc? ( ), again
-RDEPEND="${COMMON_DEPEND}
- !minimal? ( ${RECOMMENDED_DEPEND} )
- full-support? ( ${OPTIONAL_DEPEND} )
-"
-
-python_prepare_all() {
- # Prevent un-needed download during build
- sed -e "/^ 'sphinx.ext.intersphinx',/d" \
- -i doc/source/conf.py || die
-
- # requires package installed
- sed -e '/extra_compile_args =/s:"-Werror"::' \
- -i setup.py || die
-
- distutils-r1_python_prepare_all
-}
-
-python_compile() {
- distutils-r1_python_compile -j1
-}
-
-python_compile_all() {
- # To build docs the need be located in $BUILD_DIR,
- # else PYTHONPATH points to unusable modules.
- if use doc; then
- cd "${BUILD_DIR}"/lib || die
- cp -ar "${S}"/doc . && cd doc || die
- LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html
- fi
-}
-
-python_test() {
- local deselect=(
- # test for rounding errors, fails if we have better precision
- # e.g. on amd64 with FMA or on arm64
- # https://github.com/pandas-dev/pandas/issues/38921
- pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues
-
- # weird issue, doesn't seem very important
- 'pandas/tests/base/test_misc.py::test_memory_usage[series-with-empty-index]'
-
- # old psycopg2 API
- pandas/tests/tools/test_to_datetime.py::TestToDatetime::test_to_datetime_tz_psycopg2
-
- # Internet
- pandas/tests/io/xml/test_xml.py::test_wrong_url
-
- # TODO: some data path problems?
- pandas/tests/io/test_fsspec.py::test_read_csv
- pandas/tests/io/test_fsspec.py::test_markdown_options
-
- # Broken by Python changes
- # https://github.com/pandas-dev/pandas/issues/44420
- pandas/tests/io/parser/test_quoting.py::test_bad_quote_char
- )
-
- local -x LC_ALL=C.UTF-8
- pushd "${BUILD_DIR}"/lib > /dev/null || die
- "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
- PYTHONPATH=. virtx epytest pandas --skip-slow --skip-network \
- ${deselect[@]/#/--deselect } -m "not single" \
- -n "$(makeopts_jobs "${MAKEOPTS}" "$(get_nproc)")"
- find . '(' -name .pytest_cache -o -name .hypothesis ')' \
- -exec rm -r {} + || die
- popd > /dev/null || die
-}
-
-python_install_all() {
- if use doc; then
- dodoc -r "${BUILD_DIR}"/lib/doc/build/html
- einfo "An initial build of docs is absent of references to statsmodels"
- einfo "due to circular dependency. To have them included, emerge"
- einfo "statsmodels next and re-emerge pandas with USE doc"
- fi
-
- distutils-r1_python_install_all
-}
-
-pkg_postinst() {
- optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
- optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1"
- optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml
- optfeature "for msgpack compression using blosc" dev-python/blosc
- optfeature "Template engine for conditional HTML formatting" dev-python/jinja
- optfeature "Plotting support" dev-python/matplotlib
- optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.0" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
- optfeature "necessary for HDF5-based storage" ">=dev-python/pytables-3.2.1"
- optfeature "R I/O support" dev-python/rpy
- optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
- optfeature "SQL database support" ">=dev-python/sqlalchemy-1.3.0"
- optfeature "miscellaneous statistical functions" dev-python/scipy
- optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel
-}
diff --git a/dev-python/pandas/pandas-1.4.0.ebuild b/dev-python/pandas/pandas-1.4.0.ebuild
deleted file mode 100644
index 232057555c64..000000000000
--- a/dev-python/pandas/pandas-1.4.0.ebuild
+++ /dev/null
@@ -1,192 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_{8..10} )
-PYTHON_REQ_USE="threads(+)"
-
-VIRTUALX_REQUIRED="manual"
-
-inherit distutils-r1 multiprocessing optfeature virtualx
-
-DESCRIPTION="Powerful data structures for data analysis and statistics"
-HOMEPAGE="https://pandas.pydata.org/ https://github.com/pandas-dev/pandas/"
-SRC_URI="
- https://github.com/pandas-dev/pandas/releases/download/v${PV}/${P}.tar.gz"
-S="${WORKDIR}/${P/_/}"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86"
-IUSE="doc full-support minimal test X"
-RESTRICT="!test? ( test )"
-
-RECOMMENDED_DEPEND="
- >=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}]
- >=dev-python/numexpr-2.7.0[${PYTHON_USEDEP}]
-"
-
-# TODO: add pandas-gbq to the tree
-OPTIONAL_DEPEND="
- dev-python/beautifulsoup4[${PYTHON_USEDEP}]
- dev-python/blosc[${PYTHON_USEDEP}]
- || (
- dev-python/html5lib[${PYTHON_USEDEP}]
- dev-python/lxml[${PYTHON_USEDEP}]
- )
- dev-python/jinja[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- || (
- dev-python/openpyxl[${PYTHON_USEDEP}]
- dev-python/xlsxwriter[${PYTHON_USEDEP}]
- )
- >=dev-python/pytables-3.2.1[${PYTHON_USEDEP}]
- >=dev-python/xarray-0.12.3[${PYTHON_USEDEP}]
- >=dev-python/sqlalchemy-1.3.0[${PYTHON_USEDEP}]
- >=dev-python/xlrd-1.2.0[${PYTHON_USEDEP}]
- >=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}]
- !hppa? (
- dev-python/statsmodels[${PYTHON_USEDEP}]
- >=dev-python/scipy-1.1[${PYTHON_USEDEP}]
- )
- X? (
- || (
- dev-python/PyQt5[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
- )
-"
-COMMON_DEPEND="
- >=dev-python/numpy-1.21.0[${PYTHON_USEDEP}]
- >=dev-python/python-dateutil-2.8.1-r3[${PYTHON_USEDEP}]
- >=dev-python/pytz-2020.1[${PYTHON_USEDEP}]
-"
-DEPEND="${COMMON_DEPEND}
- >=dev-python/cython-0.29.24[${PYTHON_USEDEP}]
- doc? (
- ${VIRTUALX_DEPEND}
- app-text/pandoc
- dev-python/beautifulsoup4[${PYTHON_USEDEP}]
- dev-python/html5lib[${PYTHON_USEDEP}]
- dev-python/ipython[${PYTHON_USEDEP}]
- dev-python/lxml[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- dev-python/nbsphinx[${PYTHON_USEDEP}]
- >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}]
- >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}]
- >=dev-python/pytables-3.0.0[${PYTHON_USEDEP}]
- dev-python/pytz[${PYTHON_USEDEP}]
- dev-python/rpy[${PYTHON_USEDEP}]
- dev-python/sphinx[${PYTHON_USEDEP}]
- dev-python/xlrd[${PYTHON_USEDEP}]
- dev-python/xlwt[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]
- x11-misc/xclip
- )
- test? (
- ${VIRTUALX_DEPEND}
- ${RECOMMENDED_DEPEND}
- ${OPTIONAL_DEPEND}
- dev-python/beautifulsoup4[${PYTHON_USEDEP}]
- >=dev-python/hypothesis-5.5.3[${PYTHON_USEDEP}]
- dev-python/openpyxl[${PYTHON_USEDEP}]
- dev-python/pymysql[${PYTHON_USEDEP}]
- >=dev-python/pytest-6[${PYTHON_USEDEP}]
- >=dev-python/pytest-xdist-1.31[${PYTHON_USEDEP}]
- dev-python/psycopg:2[${PYTHON_USEDEP}]
- dev-python/xlsxwriter[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
-"
-# dev-python/statsmodels invokes a circular dep
-# hence rm from doc? ( ), again
-RDEPEND="${COMMON_DEPEND}
- !minimal? ( ${RECOMMENDED_DEPEND} )
- full-support? ( ${OPTIONAL_DEPEND} )
-"
-
-python_prepare_all() {
- local PATCHES=(
- # https://github.com/pandas-dev/pandas/issues/44980
- "${FILESDIR}"/${P}-distutils-hack-assertion.patch
- )
-
- # Prevent un-needed download during build
- sed -e "/^ 'sphinx.ext.intersphinx',/d" \
- -i doc/source/conf.py || die
-
- # requires package installed
- sed -e '/extra_compile_args =/s:"-Werror"::' \
- -i setup.py || die
-
- distutils-r1_python_prepare_all
-}
-
-python_compile() {
- distutils-r1_python_compile -j1
-}
-
-python_compile_all() {
- # To build docs the need be located in $BUILD_DIR,
- # else PYTHONPATH points to unusable modules.
- if use doc; then
- cd "${BUILD_DIR}"/lib || die
- cp -ar "${S}"/doc . && cd doc || die
- LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html
- fi
-}
-
-src_test() {
- virtx distutils-r1_src_test
-}
-
-python_test() {
- local EPYTEST_DESELECT=(
- # test for rounding errors, fails if we have better precision
- # e.g. on amd64 with FMA or on arm64
- # https://github.com/pandas-dev/pandas/issues/38921
- pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues
-
- # TODO
- pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated
- pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated_direct
- )
-
- local -x LC_ALL=C.UTF-8
- cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
- "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
- epytest pandas --skip-slow --skip-network -m "not single" \
- -n "$(makeopts_jobs "${MAKEOPTS}" "$(get_nproc)")" ||
- die "Tests failed with ${EPYTHON}"
-}
-
-python_install_all() {
- if use doc; then
- dodoc -r "${BUILD_DIR}"/lib/doc/build/html
- einfo "An initial build of docs is absent of references to statsmodels"
- einfo "due to circular dependency. To have them included, emerge"
- einfo "statsmodels next and re-emerge pandas with USE doc"
- fi
-
- distutils-r1_python_install_all
-}
-
-pkg_postinst() {
- optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
- optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1"
- optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml
- optfeature "for msgpack compression using blosc" dev-python/blosc
- optfeature "Template engine for conditional HTML formatting" dev-python/jinja
- optfeature "Plotting support" dev-python/matplotlib
- optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.0" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
- optfeature "necessary for HDF5-based storage" ">=dev-python/pytables-3.2.1"
- optfeature "R I/O support" dev-python/rpy
- optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
- optfeature "SQL database support" ">=dev-python/sqlalchemy-1.3.0"
- optfeature "miscellaneous statistical functions" dev-python/scipy
- optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel
-}
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-python/pandas/, dev-python/pandas/files/
@ 2022-07-26 16:06 Michał Górny
0 siblings, 0 replies; 7+ messages in thread
From: Michał Górny @ 2022-07-26 16:06 UTC (permalink / raw
To: gentoo-commits
commit: f25c5c36bbb79be46327a12e51601d18325cda58
Author: Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Tue Jul 26 16:04:44 2022 +0000
Commit: Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Tue Jul 26 16:04:44 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f25c5c36
dev-python/pandas: Remove old
Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>
dev-python/pandas/Manifest | 1 -
.../pandas-1.4.0-distutils-hack-assertion.patch | 14 --
dev-python/pandas/pandas-1.4.2.ebuild | 201 ---------------------
3 files changed, 216 deletions(-)
diff --git a/dev-python/pandas/Manifest b/dev-python/pandas/Manifest
index 657b035e520b..bac761fd49a8 100644
--- a/dev-python/pandas/Manifest
+++ b/dev-python/pandas/Manifest
@@ -1,2 +1 @@
-DIST pandas-1.4.2.tar.gz 4940242 BLAKE2B b44c9e46458b4e2919b2d215c8678601ef0976118197172ddc74fa712cf07b02cdb09b79940e90bf6907a45e7e3c63615292f7141a4fb8ed4ae22a36decd1e39 SHA512 6406241e30e9ed386610dd90bbb7407cfe3e94ff20c8fd1241aa75288894666f06e59f7c74b5f916080a3745254ba22ec9dad1195f040b613639b5712aced571
DIST pandas-1.4.3.tar.gz 4941520 BLAKE2B b134f7c04c2478b7105214ed62e9adcaed98ffb4179a785f7887850d66702bf0f185d60a3da6de6226742529008bac614b494453dca929e477960ff3b43ef93d SHA512 d8d7575ce2b813361641d4e438844e03ed79179f5dcc56f2e4923bfeceab6f825a9bcc419e9492ee5e0272ea7c9bb9eeab6a0e242a880a87999df2a492436d8e
diff --git a/dev-python/pandas/files/pandas-1.4.0-distutils-hack-assertion.patch b/dev-python/pandas/files/pandas-1.4.0-distutils-hack-assertion.patch
deleted file mode 100644
index 4842de94311f..000000000000
--- a/dev-python/pandas/files/pandas-1.4.0-distutils-hack-assertion.patch
+++ /dev/null
@@ -1,14 +0,0 @@
-diff --git a/pandas/util/_print_versions.py b/pandas/util/_print_versions.py
-index 289900c473..91d518d1ab 100644
---- a/pandas/util/_print_versions.py
-+++ b/pandas/util/_print_versions.py
-@@ -60,8 +60,8 @@ def _get_dependency_info() -> dict[str, JSONSerializable]:
- "pytz",
- "dateutil",
- # install / build,
-- "pip",
- "setuptools",
-+ "pip",
- "Cython",
- # test
- "pytest",
diff --git a/dev-python/pandas/pandas-1.4.2.ebuild b/dev-python/pandas/pandas-1.4.2.ebuild
deleted file mode 100644
index f362265d293d..000000000000
--- a/dev-python/pandas/pandas-1.4.2.ebuild
+++ /dev/null
@@ -1,201 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_{8..10} )
-PYTHON_REQ_USE="threads(+)"
-
-VIRTUALX_REQUIRED="manual"
-
-inherit distutils-r1 multiprocessing optfeature virtualx
-
-DESCRIPTION="Powerful data structures for data analysis and statistics"
-HOMEPAGE="https://pandas.pydata.org/ https://github.com/pandas-dev/pandas/"
-SRC_URI="
- https://github.com/pandas-dev/pandas/releases/download/v${PV}/${P}.tar.gz
-"
-S="${WORKDIR}/${P/_/}"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="amd64 arm arm64 ~hppa ~ia64 ppc ppc64 ~riscv ~s390 ~sparc x86"
-IUSE="doc full-support minimal test X"
-RESTRICT="!test? ( test )"
-
-RECOMMENDED_DEPEND="
- >=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}]
- >=dev-python/numexpr-2.7.0[${PYTHON_USEDEP}]
-"
-
-# TODO: add pandas-gbq to the tree
-OPTIONAL_DEPEND="
- dev-python/beautifulsoup4[${PYTHON_USEDEP}]
- dev-python/blosc[${PYTHON_USEDEP}]
- || (
- dev-python/html5lib[${PYTHON_USEDEP}]
- dev-python/lxml[${PYTHON_USEDEP}]
- )
- dev-python/jinja[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- || (
- dev-python/openpyxl[${PYTHON_USEDEP}]
- dev-python/xlsxwriter[${PYTHON_USEDEP}]
- )
- >=dev-python/pytables-3.2.1[${PYTHON_USEDEP}]
- >=dev-python/xarray-0.12.3[${PYTHON_USEDEP}]
- >=dev-python/sqlalchemy-1.3.0[${PYTHON_USEDEP}]
- >=dev-python/xlrd-1.2.0[${PYTHON_USEDEP}]
- >=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}]
- !hppa? (
- dev-python/statsmodels[${PYTHON_USEDEP}]
- >=dev-python/scipy-1.1[${PYTHON_USEDEP}]
- )
- X? (
- || (
- dev-python/PyQt5[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
- )
-"
-COMMON_DEPEND="
- >=dev-python/numpy-1.21.0[${PYTHON_USEDEP}]
- >=dev-python/python-dateutil-2.8.1-r3[${PYTHON_USEDEP}]
- >=dev-python/pytz-2020.1[${PYTHON_USEDEP}]
-"
-DEPEND="
- ${COMMON_DEPEND}
- >=dev-python/cython-0.29.24[${PYTHON_USEDEP}]
- doc? (
- ${VIRTUALX_DEPEND}
- app-text/pandoc
- dev-python/beautifulsoup4[${PYTHON_USEDEP}]
- dev-python/html5lib[${PYTHON_USEDEP}]
- dev-python/ipython[${PYTHON_USEDEP}]
- dev-python/lxml[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- dev-python/nbsphinx[${PYTHON_USEDEP}]
- >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}]
- >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}]
- >=dev-python/pytables-3.0.0[${PYTHON_USEDEP}]
- dev-python/pytz[${PYTHON_USEDEP}]
- dev-python/rpy[${PYTHON_USEDEP}]
- dev-python/sphinx[${PYTHON_USEDEP}]
- dev-python/xlrd[${PYTHON_USEDEP}]
- dev-python/xlwt[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]
- x11-misc/xclip
- )
- test? (
- ${VIRTUALX_DEPEND}
- ${RECOMMENDED_DEPEND}
- ${OPTIONAL_DEPEND}
- dev-python/beautifulsoup4[${PYTHON_USEDEP}]
- >=dev-python/hypothesis-5.5.3[${PYTHON_USEDEP}]
- dev-python/openpyxl[${PYTHON_USEDEP}]
- dev-python/pymysql[${PYTHON_USEDEP}]
- >=dev-python/pytest-6[${PYTHON_USEDEP}]
- >=dev-python/pytest-xdist-1.31[${PYTHON_USEDEP}]
- dev-python/psycopg:2[${PYTHON_USEDEP}]
- dev-python/xlsxwriter[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
-"
-# dev-python/statsmodels invokes a circular dep
-# hence rm from doc? ( ), again
-RDEPEND="
- ${COMMON_DEPEND}
- !minimal? ( ${RECOMMENDED_DEPEND} )
- full-support? ( ${OPTIONAL_DEPEND} )
-"
-
-python_prepare_all() {
- local PATCHES=(
- # https://github.com/pandas-dev/pandas/issues/44980
- "${FILESDIR}"/pandas-1.4.0-distutils-hack-assertion.patch
- )
-
- # Prevent un-needed download during build
- sed -e "/^ 'sphinx.ext.intersphinx',/d" \
- -i doc/source/conf.py || die
-
- # requires package installed
- sed -e '/extra_compile_args =/s:"-Werror"::' \
- -i setup.py || die
-
- distutils-r1_python_prepare_all
-}
-
-python_compile() {
- distutils-r1_python_compile -j1
-}
-
-python_compile_all() {
- # To build docs the need be located in $BUILD_DIR,
- # else PYTHONPATH points to unusable modules.
- if use doc; then
- cd "${BUILD_DIR}"/lib || die
- cp -ar "${S}"/doc . && cd doc || die
- LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html
- fi
-}
-
-src_test() {
- virtx distutils-r1_src_test
-}
-
-python_test() {
- local EPYTEST_DESELECT=(
- # test for rounding errors, fails if we have better precision
- # e.g. on amd64 with FMA or on arm64
- # https://github.com/pandas-dev/pandas/issues/38921
- pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues
-
- # TODO
- pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated
- pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated_direct
-
- # TODO: these require a running db server
- pandas/tests/io/test_sql.py::TestMySQLAlchemy
- pandas/tests/io/test_sql.py::TestMySQLAlchemyConn
- pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy
- pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn
- )
-
- local -x LC_ALL=C.UTF-8
- cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
- "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
- epytest pandas --skip-slow --skip-network -m "not single" \
- -n "$(makeopts_jobs "${MAKEOPTS}" "$(get_nproc)")" ||
- die "Tests failed with ${EPYTHON}"
-}
-
-python_install_all() {
- if use doc; then
- dodoc -r "${BUILD_DIR}"/lib/doc/build/html
- einfo "An initial build of docs is absent of references to statsmodels"
- einfo "due to circular dependency. To have them included, emerge"
- einfo "statsmodels next and re-emerge pandas with USE doc"
- fi
-
- distutils-r1_python_install_all
-}
-
-pkg_postinst() {
- optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
- optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1"
- optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml
- optfeature "for msgpack compression using blosc" dev-python/blosc
- optfeature "Template engine for conditional HTML formatting" dev-python/jinja
- optfeature "Plotting support" dev-python/matplotlib
- optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.0" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
- optfeature "necessary for HDF5-based storage" ">=dev-python/pytables-3.2.1"
- optfeature "R I/O support" dev-python/rpy
- optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
- optfeature "SQL database support" ">=dev-python/sqlalchemy-1.3.0"
- optfeature "miscellaneous statistical functions" dev-python/scipy
- optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel
-}
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-python/pandas/, dev-python/pandas/files/
@ 2023-09-21 9:54 Michał Górny
0 siblings, 0 replies; 7+ messages in thread
From: Michał Górny @ 2023-09-21 9:54 UTC (permalink / raw
To: gentoo-commits
commit: c83adcc257548794f86a2ff6a08a76988ea258fb
Author: Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Thu Sep 21 05:33:09 2023 +0000
Commit: Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Thu Sep 21 09:54:11 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c83adcc2
dev-python/pandas: Bump to 2.1.1
Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>
dev-python/pandas/Manifest | 1 +
dev-python/pandas/files/pandas-2.1.1-which.patch | 12 ++
dev-python/pandas/pandas-2.1.1.ebuild | 202 +++++++++++++++++++++++
3 files changed, 215 insertions(+)
diff --git a/dev-python/pandas/Manifest b/dev-python/pandas/Manifest
index c35b3e096f7f..6e451cb47dae 100644
--- a/dev-python/pandas/Manifest
+++ b/dev-python/pandas/Manifest
@@ -6,3 +6,4 @@ DIST pandas-2.0.1.tar.gz 5279594 BLAKE2B 84dbab2c6079c77eb7f367aaabc2f4d0c8205a3
DIST pandas-2.0.2.tar.gz 5290568 BLAKE2B 26eb9db6c1c2b4f9ae31b3aae09fc4db930d13e59b2037261eb2e3006a04402bc0a502febe29c0a3e071953bfbf4efac56eddf14bca2e22be0128e82d649a958 SHA512 feda98a2f83865d0ecb3fc2c37c927ddcd075f621954758eee26f1e9a0d9d1367ce790972f4ee3fb5928731ac157533345635fed390fdc306541047ab47fda60
DIST pandas-2.0.3.tar.gz 5284455 BLAKE2B 42db94dd031ca10c87434f4f903509abf0e6c2c3e3561ae5f5db6db09ebf95996aaa34e1f98a3e33f2b687c69dd1b38dc136d5928da2c096756b6755bf9b31c0 SHA512 bee3640521692545cb063b78c85f5ab90817c8029156f97856af4c9edfcc3e13596b48c4c1b4060c92e7e75b3b876d0734f7c1e3b2096d44c52ec09372c99d2e
DIST pandas-2.1.0.tar.gz 4263970 BLAKE2B cae30e74fa227252a4d05a032662f5229d676917720b7cca5a85d91a680f11bca7b0fb8ac79bdf1cd7f580aab99db1bd13571b86510516d10a74b1197abebbd1 SHA512 85a64ef7abffdb3a78547942dabfe621d7c8e2cf0da5285e64a9018865fadb037e030d5077a1790acecc1616200f50a777c6ab775b888a72d7fc36cd8855a704
+DIST pandas-2.1.1.tar.gz 4266250 BLAKE2B 9d8256300db65b606e34b16d7f3884b602794fe3c14d66115056db4a4658603fbe7a7a3082dfc781760517d643d6e21a6d4d43441131ec6aed5965b6fa8a0e9c SHA512 346e13e06805948c569712028c9b8d756c67ca2fab040999a51a4e759206d50d8ee25be38ac3c7cb3d2e692a02d85c1ec198841311fe43cb04b64f2741627a4e
diff --git a/dev-python/pandas/files/pandas-2.1.1-which.patch b/dev-python/pandas/files/pandas-2.1.1-which.patch
new file mode 100644
index 000000000000..424c10af82ae
--- /dev/null
+++ b/dev-python/pandas/files/pandas-2.1.1-which.patch
@@ -0,0 +1,12 @@
+diff --git a/pandas/io/clipboard/__init__.py b/pandas/io/clipboard/__init__.py
+index c07f51d875..14d79fb367 100644
+--- a/pandas/io/clipboard/__init__.py
++++ b/pandas/io/clipboard/__init__.py
+@@ -87,6 +87,7 @@ else:
+
+
+ def _executable_exists(name):
++ return which(name)
+ return (
+ subprocess.call(
+ [WHICH_CMD, name], stdout=subprocess.PIPE, stderr=subprocess.PIPE
diff --git a/dev-python/pandas/pandas-2.1.1.ebuild b/dev-python/pandas/pandas-2.1.1.ebuild
new file mode 100644
index 000000000000..175a31dc5052
--- /dev/null
+++ b/dev-python/pandas/pandas-2.1.1.ebuild
@@ -0,0 +1,202 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_EXT=1
+DISTUTILS_USE_PEP517=meson-python
+PYTHON_COMPAT=( python3_{10..11} )
+PYTHON_REQ_USE="threads(+)"
+
+VIRTUALX_REQUIRED="manual"
+
+inherit distutils-r1 multiprocessing optfeature pypi virtualx
+
+DESCRIPTION="Powerful data structures for data analysis and statistics"
+HOMEPAGE="
+ https://pandas.pydata.org/
+ https://github.com/pandas-dev/pandas/
+ https://pypi.org/project/pandas/
+"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~arm ~arm64 ~ppc ~ppc64 ~riscv ~x86 ~arm64-macos ~x64-macos"
+IUSE="full-support minimal test X"
+RESTRICT="!test? ( test )"
+
+RECOMMENDED_DEPEND="
+ >=dev-python/bottleneck-1.3.4[${PYTHON_USEDEP}]
+ >=dev-python/numexpr-2.8.0[${PYTHON_USEDEP}]
+"
+
+# TODO: add pandas-gbq to the tree
+# TODO: Re-add dev-python/statsmodel[python3_11] dep once it supports python3_11
+# https://github.com/statsmodels/statsmodels/issues/8287
+OPTIONAL_DEPEND="
+ >=dev-python/beautifulsoup4-4.11.1[${PYTHON_USEDEP}]
+ dev-python/blosc[${PYTHON_USEDEP}]
+ >=dev-python/html5lib-1.1[${PYTHON_USEDEP}]
+ >=dev-python/jinja-3.1.2[${PYTHON_USEDEP}]
+ >=dev-python/lxml-4.8.0[${PYTHON_USEDEP}]
+ >=dev-python/matplotlib-3.6.1[${PYTHON_USEDEP}]
+ >=dev-python/openpyxl-3.0.7[${PYTHON_USEDEP}]
+ >=dev-python/pytables-3.7.0[${PYTHON_USEDEP}]
+ >=dev-python/sqlalchemy-1.4.36[${PYTHON_USEDEP}]
+ >=dev-python/tabulate-0.8.10[${PYTHON_USEDEP}]
+ >=dev-python/xarray-2022.3.0[${PYTHON_USEDEP}]
+ >=dev-python/xlrd-2.0.1[${PYTHON_USEDEP}]
+ >=dev-python/xlsxwriter-3.0.3[${PYTHON_USEDEP}]
+ >=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}]
+ !hppa? (
+ $(python_gen_cond_dep '
+ dev-python/statsmodels[${PYTHON_USEDEP}]
+ ' python3_{8..10} )
+ >=dev-python/scipy-1.8.1[${PYTHON_USEDEP}]
+ )
+ X? (
+ || (
+ >=dev-python/PyQt5-5.15.6[${PYTHON_USEDEP}]
+ >=dev-python/QtPy-2.2.0[${PYTHON_USEDEP}]
+ x11-misc/xclip
+ x11-misc/xsel
+ )
+ )
+"
+DEPEND="
+ >=dev-python/numpy-1.23.2[${PYTHON_USEDEP}]
+"
+COMMON_DEPEND="
+ ${DEPEND}
+ >=dev-python/python-dateutil-2.8.2[${PYTHON_USEDEP}]
+ >=dev-python/pytz-2020.1[${PYTHON_USEDEP}]
+"
+BDEPEND="
+ ${COMMON_DEPEND}
+ >=dev-python/cython-0.29.33[${PYTHON_USEDEP}]
+ >=dev-python/versioneer-0.28[${PYTHON_USEDEP}]
+ test? (
+ ${VIRTUALX_DEPEND}
+ ${RECOMMENDED_DEPEND}
+ ${OPTIONAL_DEPEND}
+ >=dev-python/beautifulsoup4-4.11.1[${PYTHON_USEDEP}]
+ >=dev-python/hypothesis-6.46.1[${PYTHON_USEDEP}]
+ >=dev-python/openpyxl-3.0.10[${PYTHON_USEDEP}]
+ >=dev-python/pymysql-1.0.2[${PYTHON_USEDEP}]
+ >=dev-python/pytest-7.3.2[${PYTHON_USEDEP}]
+ >=dev-python/pytest-asyncio-0.17.0[${PYTHON_USEDEP}]
+ >=dev-python/pytest-xdist-2.2.0[${PYTHON_USEDEP}]
+ >=dev-python/psycopg-2.9.3:2[${PYTHON_USEDEP}]
+ >=dev-python/xlsxwriter-3.0.3[${PYTHON_USEDEP}]
+ x11-misc/xclip
+ x11-misc/xsel
+ )
+"
+RDEPEND="
+ ${COMMON_DEPEND}
+ dev-python/tzdata[${PYTHON_USEDEP}]
+ !minimal? ( ${RECOMMENDED_DEPEND} )
+ full-support? ( ${OPTIONAL_DEPEND} )
+"
+
+PATCHES=(
+ # a quick hack, it's already fixed in main
+ "${FILESDIR}/pandas-2.1.1-which.patch"
+)
+
+src_test() {
+ virtx distutils-r1_src_test
+}
+
+python_test() {
+ local EPYTEST_DESELECT=(
+ # test for rounding errors, fails if we have better precision
+ # e.g. on amd64 with FMA or on arm64
+ # https://github.com/pandas-dev/pandas/issues/38921
+ tests/window/test_rolling.py::test_rolling_var_numerical_issues
+
+ # TODO; unhappy about DISPLAY?
+ tests/test_downstream.py::test_seaborn
+
+ # OOMs
+ tests/io/parser/test_c_parser_only.py::test_bytes_exceed_2gb
+
+ # TODO: numexpr says "forbidden control characters"
+ tests/computation/test_eval.py::TestOperations::test_multi_line_expression_local_variable
+ 'tests/computation/test_eval.py::test_query_token[numexpr-Temp(\xb0C)]'
+ tests/frame/test_query_eval.py::TestDataFrameQueryBacktickQuoting::test_lots_of_operators_string
+ tests/frame/test_query_eval.py::TestDataFrameQueryBacktickQuoting::test_multiple_spaces
+ tests/frame/test_query_eval.py::TestDataFrameQueryBacktickQuoting::test_parenthesis
+ tests/frame/test_query_eval.py::TestDataFrameQueryBacktickQuoting::test_start_with_spaces
+ tests/frame/test_query_eval.py::TestDataFrameQueryNumExprPandas::test_local_syntax
+ tests/frame/test_query_eval.py::TestDataFrameQueryNumExprPandas::test_local_variable_with_in
+ tests/frame/test_query_eval.py::TestDataFrameQueryNumExprPandas::test_nested_scope
+ tests/frame/test_query_eval.py::TestDataFrameQueryNumExprPandas::test_query_scope
+
+ # TODO: missing data not covered by --no-strict-data-files?
+ tests/io/xml/test_xml.py::test_empty_stylesheet
+ tests/io/xml/test_xml.py::test_wrong_file_path
+
+ # TODO
+ tests/frame/test_arithmetic.py::TestFrameFlexArithmetic::test_floordiv_axis0_numexpr_path
+
+ # deprecation warning
+ tests/io/pytables/test_retain_attributes.py::test_retain_index_attributes2
+
+ # Needs 64-bit time_t (TODO: split into 32-bit arch only section)
+ tests/tseries/offsets/test_year.py::test_add_out_of_pydatetime_range
+ 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessDay]'
+ 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessHour]'
+ 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessMonthEnd]'
+ 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessMonthBegin]'
+ 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BQuarterEnd]'
+ 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BQuarterBegin]'
+ 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessDay]'
+ 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessHour]'
+ 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessMonthEnd]'
+ 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessMonthBegin]'
+ 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-MonthEnd]'
+ 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-MonthBegin]'
+ 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-SemiMonthBegin]'
+ 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-SemiMonthEnd]'
+ 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-QuarterEnd]'
+ 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-LastWeekOfMonth]'
+ 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-WeekOfMonth]'
+ 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-Week]'
+
+ # hdf / pytables have alignment problems: bug #911660
+ # https://github.com/pandas-dev/pandas/issues/54396
+ tests/io/pytables/test_append.py::test_append_frame_column_oriented
+ tests/io/pytables/test_store.py::test_select_filter_corner
+ )
+
+ local -x LC_ALL=C.UTF-8
+ cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
+ "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
+ # --no-strict-data-files is necessary since upstream prevents data
+ # files from even being included in GitHub archives, sigh
+ # https://github.com/pandas-dev/pandas/issues/54907
+ epytest pandas/tests \
+ --no-strict-data-files \
+ --maxfail=32 \
+ -m "not single and not slow and not network" \
+ -n "$(makeopts_jobs)" --dist=worksteal ||
+ die "Tests failed with ${EPYTHON}"
+ rm test-data.xml || die
+}
+
+pkg_postinst() {
+ optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
+ optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1"
+ optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml
+ optfeature "for msgpack compression using blosc" dev-python/blosc
+ optfeature "Template engine for conditional HTML formatting" dev-python/jinja
+ optfeature "Plotting support" dev-python/matplotlib
+ optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.10" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
+ optfeature "necessary for HDF5-based storage" ">=dev-python/pytables-3.7.0"
+ optfeature "R I/O support" dev-python/rpy
+ optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
+ optfeature "SQL database support" ">=dev-python/sqlalchemy-1.4.36"
+ optfeature "miscellaneous statistical functions" dev-python/scipy
+ optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/QtPy dev-python/pygtk x11-misc/xclip x11-misc/xsel
+}
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-python/pandas/, dev-python/pandas/files/
@ 2023-10-29 4:46 Michał Górny
0 siblings, 0 replies; 7+ messages in thread
From: Michał Górny @ 2023-10-29 4:46 UTC (permalink / raw
To: gentoo-commits
commit: 682394b931f78125f69f4e61ab2a152856d8dacd
Author: Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Sun Oct 29 04:41:00 2023 +0000
Commit: Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Sun Oct 29 04:41:00 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=682394b9
dev-python/pandas: Remove old
Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>
dev-python/pandas/Manifest | 7 -
.../pandas/files/pandas-2.1.0-build-system.patch | 53 -----
dev-python/pandas/pandas-1.5.1.ebuild | 212 -----------------
dev-python/pandas/pandas-1.5.2.ebuild | 212 -----------------
dev-python/pandas/pandas-2.0.0.ebuild | 220 -----------------
dev-python/pandas/pandas-2.0.1.ebuild | 224 ------------------
dev-python/pandas/pandas-2.0.2.ebuild | 227 ------------------
dev-python/pandas/pandas-2.0.3-r1.ebuild | 259 ---------------------
dev-python/pandas/pandas-2.1.0.ebuild | 202 ----------------
9 files changed, 1616 deletions(-)
diff --git a/dev-python/pandas/Manifest b/dev-python/pandas/Manifest
index 4e29f2fbb812..b7c0dda3d740 100644
--- a/dev-python/pandas/Manifest
+++ b/dev-python/pandas/Manifest
@@ -1,10 +1,3 @@
-DIST pandas-1.5.1.tar.gz 5199286 BLAKE2B 17d98870f3397d7a9289a18708021a614b1d456e2ea99dae8927727aabb8aab73bd31f25c3035947f8f4c38404e7d971bf999500b300307b19a2cf6029763d0e SHA512 e5f25f21f17f36c6488f14fbfa391beb9f1989652de01cb8346d2826dead9331fea27295ee1e6f42d0875f2f1a91fcd23d606edd339432589bca5ba8d89e5ecd
-DIST pandas-1.5.2.tar.gz 5201551 BLAKE2B c6a8156a6c116f1b576837882e4ad4ada6cf21bf72acd673d74bdb1dda4f97f88a5e6422e8f8ad2fbbb85a334cd68cb0abae316d5826c54a85baf8b325ab6183 SHA512 1e6b653ff418c839895946123f90fffcfafd57f24dfbd6bae4e9988893b7d57d6276ed101112c8f9730af53f600d006fe3a53bbed597c0376856f2cfc90c1f05
DIST pandas-1.5.3.tar.gz 5203060 BLAKE2B 846a6caa8ead6a2556303494f92e2091582d8fcde2aee424fa172c4e29c189a7305261f6a931a20249e969668646ff4a3d605ee1b57785fa3677dfbd137b3602 SHA512 3c725c33dcaf78b952d2eb966ced73ff0073162a01d3cbcb722d58d8f12a82163e6e684c27284c735bdfb32dea263b960f70f6a80ff93e6b316316d40835ae35
-DIST pandas-2.0.0.tar.gz 5271334 BLAKE2B 80782f407cb93866ca445518f45ea36e081b789d72ef597f6501746c41c1bb1000f183a7352e04194401d59c523ab796373445cddd42166c19f9d8cac522f426 SHA512 6a960275e03b1171cde1085cc0a853273c35377809eddc75c82bb6deb06c3ed499265efe88012771c86f86872a6f6b2d3e218bcb209259dcfc46781367cd2f51
-DIST pandas-2.0.1.tar.gz 5279594 BLAKE2B 84dbab2c6079c77eb7f367aaabc2f4d0c8205a3d8bd2e4db9f071cf1d25c53a32f91679ae7ff56e21e76447a675b4f4e7c660708f3e2a7a56753137018239dd6 SHA512 ecb150045c82ef649fcdd940c3b45884f0f9f8a51402b331fc247c148f669fe7bece33b331d1ddac84b7fef39d096ad7488057d3772e74d087ea26bb9cac3994
-DIST pandas-2.0.2.tar.gz 5290568 BLAKE2B 26eb9db6c1c2b4f9ae31b3aae09fc4db930d13e59b2037261eb2e3006a04402bc0a502febe29c0a3e071953bfbf4efac56eddf14bca2e22be0128e82d649a958 SHA512 feda98a2f83865d0ecb3fc2c37c927ddcd075f621954758eee26f1e9a0d9d1367ce790972f4ee3fb5928731ac157533345635fed390fdc306541047ab47fda60
-DIST pandas-2.0.3.tar.gz 5284455 BLAKE2B 42db94dd031ca10c87434f4f903509abf0e6c2c3e3561ae5f5db6db09ebf95996aaa34e1f98a3e33f2b687c69dd1b38dc136d5928da2c096756b6755bf9b31c0 SHA512 bee3640521692545cb063b78c85f5ab90817c8029156f97856af4c9edfcc3e13596b48c4c1b4060c92e7e75b3b876d0734f7c1e3b2096d44c52ec09372c99d2e
-DIST pandas-2.1.0.tar.gz 4263970 BLAKE2B cae30e74fa227252a4d05a032662f5229d676917720b7cca5a85d91a680f11bca7b0fb8ac79bdf1cd7f580aab99db1bd13571b86510516d10a74b1197abebbd1 SHA512 85a64ef7abffdb3a78547942dabfe621d7c8e2cf0da5285e64a9018865fadb037e030d5077a1790acecc1616200f50a777c6ab775b888a72d7fc36cd8855a704
DIST pandas-2.1.1.tar.gz 4266250 BLAKE2B 9d8256300db65b606e34b16d7f3884b602794fe3c14d66115056db4a4658603fbe7a7a3082dfc781760517d643d6e21a6d4d43441131ec6aed5965b6fa8a0e9c SHA512 346e13e06805948c569712028c9b8d756c67ca2fab040999a51a4e759206d50d8ee25be38ac3c7cb3d2e692a02d85c1ec198841311fe43cb04b64f2741627a4e
DIST pandas-2.1.2.tar.gz 4271419 BLAKE2B 2f22035c9b7d6a0403b28ebe506550328e096f0ed87984dba28d2f49950393ed8a5a3c0c71c5391385d9f5361319431d5de3736f7381eb7670045415b05137a7 SHA512 dad04f1fcc5a59485c34ebfed0698fd47ad9eeffafaddf91642c084f4ffde8a55ce543f9dadb6e7a5066b1809489961d34fe3fe8860f64f9bd2d90b445d92063
diff --git a/dev-python/pandas/files/pandas-2.1.0-build-system.patch b/dev-python/pandas/files/pandas-2.1.0-build-system.patch
deleted file mode 100644
index 3f858647f919..000000000000
--- a/dev-python/pandas/files/pandas-2.1.0-build-system.patch
+++ /dev/null
@@ -1,53 +0,0 @@
-From 2e8e37e495b85856bb440e67db9a6a72a37cfedd Mon Sep 17 00:00:00 2001
-From: =?UTF-8?q?Micha=C5=82=20G=C3=B3rny?= <mgorny@gentoo.org>
-Date: Thu, 31 Aug 2023 18:21:26 +0200
-Subject: [PATCH] Fix build system problems
-
-Fix missing dependency for interval library, and workaround duplicate
-__init__.py files.
-
-https://github.com/pandas-dev/pandas/issues/54888
-https://github.com/pandas-dev/pandas/issues/54889
----
- pandas/_libs/meson.build | 7 ++-----
- pandas/_libs/tslibs/meson.build | 4 ----
- 2 files changed, 2 insertions(+), 9 deletions(-)
-
-diff --git a/pandas/_libs/meson.build b/pandas/_libs/meson.build
-index f302c64..07d2d8a 100644
---- a/pandas/_libs/meson.build
-+++ b/pandas/_libs/meson.build
-@@ -69,7 +69,8 @@ libs_sources = {
- 'index': {'sources': ['index.pyx', _index_class_helper]},
- 'indexing': {'sources': ['indexing.pyx']},
- 'internals': {'sources': ['internals.pyx']},
-- 'interval': {'sources': ['interval.pyx', _intervaltree_helper]},
-+ 'interval': {'sources': ['interval.pyx', _intervaltree_helper],
-+ 'deps': _khash_primitive_helper_dep},
- 'join': {'sources': ['join.pyx', _khash_primitive_helper],
- 'deps': _khash_primitive_helper_dep},
- 'lib': {'sources': ['lib.pyx', 'src/parser/tokenizer.c']},
-@@ -113,8 +114,4 @@ foreach ext_name, ext_dict : libs_sources
- )
- endforeach
-
--py.install_sources('__init__.py',
-- pure: false,
-- subdir: 'pandas/_libs')
--
- subdir('window')
-diff --git a/pandas/_libs/tslibs/meson.build b/pandas/_libs/tslibs/meson.build
-index 14d2eef..a862345 100644
---- a/pandas/_libs/tslibs/meson.build
-+++ b/pandas/_libs/tslibs/meson.build
-@@ -30,7 +30,3 @@ foreach ext_name, ext_dict : tslibs_sources
- install: true
- )
- endforeach
--
--py.install_sources('__init__.py',
-- pure: false,
-- subdir: 'pandas/_libs/tslibs')
---
-2.42.0
-
diff --git a/dev-python/pandas/pandas-1.5.1.ebuild b/dev-python/pandas/pandas-1.5.1.ebuild
deleted file mode 100644
index 9fd2d2a5f9bc..000000000000
--- a/dev-python/pandas/pandas-1.5.1.ebuild
+++ /dev/null
@@ -1,212 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_{10..11} )
-PYTHON_REQ_USE="threads(+)"
-
-VIRTUALX_REQUIRED="manual"
-
-inherit distutils-r1 multiprocessing optfeature virtualx
-
-DESCRIPTION="Powerful data structures for data analysis and statistics"
-HOMEPAGE="
- https://pandas.pydata.org/
- https://github.com/pandas-dev/pandas/
- https://pypi.org/project/pandas/
-"
-SRC_URI="
- https://github.com/pandas-dev/pandas/releases/download/v${PV}/${P}.tar.gz
-"
-S=${WORKDIR}/${P/_/}
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="amd64 arm arm64 ~hppa ~ia64 ~ppc ppc64 ~riscv ~s390 ~sparc x86"
-IUSE="doc full-support minimal test X"
-RESTRICT="!test? ( test )"
-
-RECOMMENDED_DEPEND="
- >=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}]
- >=dev-python/numexpr-2.7.0[${PYTHON_USEDEP}]
-"
-
-# TODO: add pandas-gbq to the tree
-# TODO: Re-add dev-python/statsmodel[python3_11] dep once it supports python3_11
-# https://github.com/statsmodels/statsmodels/issues/8287
-OPTIONAL_DEPEND="
- dev-python/beautifulsoup4[${PYTHON_USEDEP}]
- dev-python/blosc[${PYTHON_USEDEP}]
- || (
- dev-python/html5lib[${PYTHON_USEDEP}]
- dev-python/lxml[${PYTHON_USEDEP}]
- )
- dev-python/jinja[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- || (
- dev-python/openpyxl[${PYTHON_USEDEP}]
- dev-python/xlsxwriter[${PYTHON_USEDEP}]
- )
- >=dev-python/tables-3.2.1[${PYTHON_USEDEP}]
- >=dev-python/xarray-0.12.3[${PYTHON_USEDEP}]
- >=dev-python/sqlalchemy-1.3.0[${PYTHON_USEDEP}]
- >=dev-python/xlrd-1.2.0[${PYTHON_USEDEP}]
- >=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}]
- !hppa? (
- $(python_gen_cond_dep '
- dev-python/statsmodels[${PYTHON_USEDEP}]
- ' python3_{8..10} )
- >=dev-python/scipy-1.1[${PYTHON_USEDEP}]
- )
- X? (
- || (
- dev-python/PyQt5[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
- )
-"
-COMMON_DEPEND="
- >=dev-python/numpy-1.21.0[${PYTHON_USEDEP}]
- >=dev-python/python-dateutil-2.8.1-r3[${PYTHON_USEDEP}]
- >=dev-python/pytz-2020.1[${PYTHON_USEDEP}]
-"
-# <cython-3: bug #898706
-DEPEND="
- ${COMMON_DEPEND}
- >=dev-python/cython-0.29.32[${PYTHON_USEDEP}]
- <dev-python/cython-3[${PYTHON_USEDEP}]
- doc? (
- ${VIRTUALX_DEPEND}
- dev-python/beautifulsoup4[${PYTHON_USEDEP}]
- dev-python/html5lib[${PYTHON_USEDEP}]
- dev-python/ipython[${PYTHON_USEDEP}]
- dev-python/lxml[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- dev-python/nbsphinx[${PYTHON_USEDEP}]
- >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}]
- >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}]
- >=dev-python/tables-3.0.0[${PYTHON_USEDEP}]
- dev-python/pytz[${PYTHON_USEDEP}]
- dev-python/rpy[${PYTHON_USEDEP}]
- dev-python/sphinx[${PYTHON_USEDEP}]
- dev-python/xlrd[${PYTHON_USEDEP}]
- dev-python/xlwt[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]
- virtual/pandoc
- x11-misc/xclip
- )
- test? (
- ${VIRTUALX_DEPEND}
- ${RECOMMENDED_DEPEND}
- ${OPTIONAL_DEPEND}
- dev-python/beautifulsoup4[${PYTHON_USEDEP}]
- >=dev-python/hypothesis-5.5.3[${PYTHON_USEDEP}]
- dev-python/openpyxl[${PYTHON_USEDEP}]
- dev-python/pymysql[${PYTHON_USEDEP}]
- >=dev-python/pytest-6[${PYTHON_USEDEP}]
- >=dev-python/pytest-xdist-1.31[${PYTHON_USEDEP}]
- dev-python/psycopg:2[${PYTHON_USEDEP}]
- dev-python/xlsxwriter[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
-"
-# dev-python/statsmodels invokes a circular dep
-# hence rm from doc? ( ), again
-RDEPEND="
- ${COMMON_DEPEND}
- !minimal? ( ${RECOMMENDED_DEPEND} )
- full-support? ( ${OPTIONAL_DEPEND} )
-"
-
-python_prepare_all() {
- # Prevent un-needed download during build
- sed -e "/^ 'sphinx.ext.intersphinx',/d" \
- -i doc/source/conf.py || die
-
- # requires package installed
- sed -e '/extra_compile_args =/s:"-Werror"::' \
- -i setup.py || die
-
- distutils-r1_python_prepare_all
-}
-
-python_compile() {
- distutils-r1_python_compile -j1
-}
-
-python_compile_all() {
- # To build docs the need be located in $BUILD_DIR,
- # else PYTHONPATH points to unusable modules.
- if use doc; then
- cd "${BUILD_DIR}"/lib || die
- cp -ar "${S}"/doc . && cd doc || die
- LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html
- fi
-}
-
-src_test() {
- virtx distutils-r1_src_test
-}
-
-python_test() {
- local EPYTEST_DESELECT=(
- # test for rounding errors, fails if we have better precision
- # e.g. on amd64 with FMA or on arm64
- # https://github.com/pandas-dev/pandas/issues/38921
- pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues
-
- # TODO
- pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated
- pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated_direct
- pandas/tests/io/test_clipboard.py::TestClipboard::test_raw_roundtrip
-
- # TODO: xdist?
- pandas/tests/test_expressions.py::TestExpressions::test_run_binary
-
- # TODO: these require a running db server
- pandas/tests/io/test_sql.py::TestMySQLAlchemy
- pandas/tests/io/test_sql.py::TestMySQLAlchemyConn
- pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy
- pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn
-
- # OOMs
- pandas/tests/io/parser/test_c_parser_only.py::test_bytes_exceed_2gb
- )
-
- local -x LC_ALL=C.UTF-8
- cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
- "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
- epytest pandas --skip-slow --skip-network -m "not single" \
- -n "$(makeopts_jobs)" || die "Tests failed with ${EPYTHON}"
-}
-
-python_install_all() {
- if use doc; then
- dodoc -r "${BUILD_DIR}"/lib/doc/build/html
- einfo "An initial build of docs is absent of references to statsmodels"
- einfo "due to circular dependency. To have them included, emerge"
- einfo "statsmodels next and re-emerge pandas with USE doc"
- fi
-
- distutils-r1_python_install_all
-}
-
-pkg_postinst() {
- optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
- optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1"
- optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml
- optfeature "for msgpack compression using blosc" dev-python/blosc
- optfeature "Template engine for conditional HTML formatting" dev-python/jinja
- optfeature "Plotting support" dev-python/matplotlib
- optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.0" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
- optfeature "necessary for HDF5-based storage" ">=dev-python/tables-3.2.1"
- optfeature "R I/O support" dev-python/rpy
- optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
- optfeature "SQL database support" ">=dev-python/sqlalchemy-1.3.0"
- optfeature "miscellaneous statistical functions" dev-python/scipy
- optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel
-}
diff --git a/dev-python/pandas/pandas-1.5.2.ebuild b/dev-python/pandas/pandas-1.5.2.ebuild
deleted file mode 100644
index 09d214d3f934..000000000000
--- a/dev-python/pandas/pandas-1.5.2.ebuild
+++ /dev/null
@@ -1,212 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_{10..11} )
-PYTHON_REQ_USE="threads(+)"
-
-VIRTUALX_REQUIRED="manual"
-
-inherit distutils-r1 multiprocessing optfeature virtualx
-
-DESCRIPTION="Powerful data structures for data analysis and statistics"
-HOMEPAGE="
- https://pandas.pydata.org/
- https://github.com/pandas-dev/pandas/
- https://pypi.org/project/pandas/
-"
-SRC_URI="
- https://github.com/pandas-dev/pandas/releases/download/v${PV}/${P}.tar.gz
-"
-S=${WORKDIR}/${P/_/}
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="amd64 arm arm64 ~hppa ~ia64 ~ppc ppc64 ~riscv ~s390 ~sparc ~x86"
-IUSE="doc full-support minimal test X"
-RESTRICT="!test? ( test )"
-
-RECOMMENDED_DEPEND="
- >=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}]
- >=dev-python/numexpr-2.7.0[${PYTHON_USEDEP}]
-"
-
-# TODO: add pandas-gbq to the tree
-# TODO: Re-add dev-python/statsmodel[python3_11] dep once it supports python3_11
-# https://github.com/statsmodels/statsmodels/issues/8287
-OPTIONAL_DEPEND="
- dev-python/beautifulsoup4[${PYTHON_USEDEP}]
- dev-python/blosc[${PYTHON_USEDEP}]
- || (
- dev-python/html5lib[${PYTHON_USEDEP}]
- dev-python/lxml[${PYTHON_USEDEP}]
- )
- dev-python/jinja[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- || (
- dev-python/openpyxl[${PYTHON_USEDEP}]
- dev-python/xlsxwriter[${PYTHON_USEDEP}]
- )
- >=dev-python/tables-3.2.1[${PYTHON_USEDEP}]
- >=dev-python/xarray-0.12.3[${PYTHON_USEDEP}]
- >=dev-python/sqlalchemy-1.3.0[${PYTHON_USEDEP}]
- >=dev-python/xlrd-1.2.0[${PYTHON_USEDEP}]
- >=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}]
- !hppa? (
- $(python_gen_cond_dep '
- dev-python/statsmodels[${PYTHON_USEDEP}]
- ' python3_{8..10} )
- >=dev-python/scipy-1.1[${PYTHON_USEDEP}]
- )
- X? (
- || (
- dev-python/PyQt5[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
- )
-"
-COMMON_DEPEND="
- >=dev-python/numpy-1.21.0[${PYTHON_USEDEP}]
- >=dev-python/python-dateutil-2.8.1-r3[${PYTHON_USEDEP}]
- >=dev-python/pytz-2020.1[${PYTHON_USEDEP}]
-"
-# <cython-3: bug #898706
-DEPEND="
- ${COMMON_DEPEND}
- >=dev-python/cython-0.29.32[${PYTHON_USEDEP}]
- <dev-python/cython-3[${PYTHON_USEDEP}]
- doc? (
- ${VIRTUALX_DEPEND}
- dev-python/beautifulsoup4[${PYTHON_USEDEP}]
- dev-python/html5lib[${PYTHON_USEDEP}]
- dev-python/ipython[${PYTHON_USEDEP}]
- dev-python/lxml[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- dev-python/nbsphinx[${PYTHON_USEDEP}]
- >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}]
- >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}]
- >=dev-python/tables-3.0.0[${PYTHON_USEDEP}]
- dev-python/pytz[${PYTHON_USEDEP}]
- dev-python/rpy[${PYTHON_USEDEP}]
- dev-python/sphinx[${PYTHON_USEDEP}]
- dev-python/xlrd[${PYTHON_USEDEP}]
- dev-python/xlwt[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]
- virtual/pandoc
- x11-misc/xclip
- )
- test? (
- ${VIRTUALX_DEPEND}
- ${RECOMMENDED_DEPEND}
- ${OPTIONAL_DEPEND}
- dev-python/beautifulsoup4[${PYTHON_USEDEP}]
- >=dev-python/hypothesis-5.5.3[${PYTHON_USEDEP}]
- dev-python/openpyxl[${PYTHON_USEDEP}]
- dev-python/pymysql[${PYTHON_USEDEP}]
- >=dev-python/pytest-6[${PYTHON_USEDEP}]
- >=dev-python/pytest-xdist-1.31[${PYTHON_USEDEP}]
- dev-python/psycopg:2[${PYTHON_USEDEP}]
- dev-python/xlsxwriter[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
-"
-# dev-python/statsmodels invokes a circular dep
-# hence rm from doc? ( ), again
-RDEPEND="
- ${COMMON_DEPEND}
- !minimal? ( ${RECOMMENDED_DEPEND} )
- full-support? ( ${OPTIONAL_DEPEND} )
-"
-
-python_prepare_all() {
- # Prevent un-needed download during build
- sed -e "/^ 'sphinx.ext.intersphinx',/d" \
- -i doc/source/conf.py || die
-
- # requires package installed
- sed -e '/extra_compile_args =/s:"-Werror"::' \
- -i setup.py || die
-
- distutils-r1_python_prepare_all
-}
-
-python_compile() {
- distutils-r1_python_compile -j1
-}
-
-python_compile_all() {
- # To build docs the need be located in $BUILD_DIR,
- # else PYTHONPATH points to unusable modules.
- if use doc; then
- cd "${BUILD_DIR}"/lib || die
- cp -ar "${S}"/doc . && cd doc || die
- LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html
- fi
-}
-
-src_test() {
- virtx distutils-r1_src_test
-}
-
-python_test() {
- local EPYTEST_DESELECT=(
- # test for rounding errors, fails if we have better precision
- # e.g. on amd64 with FMA or on arm64
- # https://github.com/pandas-dev/pandas/issues/38921
- pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues
-
- # TODO
- pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated
- pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated_direct
- pandas/tests/io/test_clipboard.py::TestClipboard::test_raw_roundtrip
-
- # TODO: xdist?
- pandas/tests/test_expressions.py::TestExpressions::test_run_binary
-
- # TODO: these require a running db server
- pandas/tests/io/test_sql.py::TestMySQLAlchemy
- pandas/tests/io/test_sql.py::TestMySQLAlchemyConn
- pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy
- pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn
-
- # OOMs
- pandas/tests/io/parser/test_c_parser_only.py::test_bytes_exceed_2gb
- )
-
- local -x LC_ALL=C.UTF-8
- cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
- "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
- epytest pandas --skip-slow --skip-network -m "not single" \
- -n "$(makeopts_jobs)" || die "Tests failed with ${EPYTHON}"
-}
-
-python_install_all() {
- if use doc; then
- dodoc -r "${BUILD_DIR}"/lib/doc/build/html
- einfo "An initial build of docs is absent of references to statsmodels"
- einfo "due to circular dependency. To have them included, emerge"
- einfo "statsmodels next and re-emerge pandas with USE doc"
- fi
-
- distutils-r1_python_install_all
-}
-
-pkg_postinst() {
- optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
- optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1"
- optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml
- optfeature "for msgpack compression using blosc" dev-python/blosc
- optfeature "Template engine for conditional HTML formatting" dev-python/jinja
- optfeature "Plotting support" dev-python/matplotlib
- optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.0" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
- optfeature "necessary for HDF5-based storage" ">=dev-python/tables-3.2.1"
- optfeature "R I/O support" dev-python/rpy
- optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
- optfeature "SQL database support" ">=dev-python/sqlalchemy-1.3.0"
- optfeature "miscellaneous statistical functions" dev-python/scipy
- optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel
-}
diff --git a/dev-python/pandas/pandas-2.0.0.ebuild b/dev-python/pandas/pandas-2.0.0.ebuild
deleted file mode 100644
index 304dd3803bd2..000000000000
--- a/dev-python/pandas/pandas-2.0.0.ebuild
+++ /dev/null
@@ -1,220 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_{10..11} )
-PYTHON_REQ_USE="threads(+)"
-
-VIRTUALX_REQUIRED="manual"
-
-inherit distutils-r1 multiprocessing optfeature virtualx
-
-DESCRIPTION="Powerful data structures for data analysis and statistics"
-HOMEPAGE="
- https://pandas.pydata.org/
- https://github.com/pandas-dev/pandas/
- https://pypi.org/project/pandas/
-"
-SRC_URI="
- https://github.com/pandas-dev/pandas/releases/download/v${PV}/${P}.tar.gz
-"
-S=${WORKDIR}/${P/_/}
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~arm64 ~ppc ~ppc64 ~riscv ~x86"
-IUSE="doc full-support minimal test X"
-RESTRICT="!test? ( test )"
-
-RECOMMENDED_DEPEND="
- >=dev-python/bottleneck-1.3.2[${PYTHON_USEDEP}]
- >=dev-python/numexpr-2.7.1[${PYTHON_USEDEP}]
-"
-
-# TODO: add pandas-gbq to the tree
-# TODO: Re-add dev-python/statsmodel[python3_11] dep once it supports python3_11
-# https://github.com/statsmodels/statsmodels/issues/8287
-OPTIONAL_DEPEND="
- >=dev-python/beautifulsoup4-4.9.3[${PYTHON_USEDEP}]
- dev-python/blosc[${PYTHON_USEDEP}]
- >=dev-python/html5lib-1.1[${PYTHON_USEDEP}]
- >=dev-python/jinja-3.0.0[${PYTHON_USEDEP}]
- >=dev-python/lxml-4.6.3[${PYTHON_USEDEP}]
- >=dev-python/matplotlib-3.6.1[${PYTHON_USEDEP}]
- >=dev-python/openpyxl-3.0.7[${PYTHON_USEDEP}]
- >=dev-python/sqlalchemy-1.4.16[${PYTHON_USEDEP}]
- >=dev-python/tables-3.6.1[${PYTHON_USEDEP}]
- >=dev-python/tabulate-0.8.9[${PYTHON_USEDEP}]
- >=dev-python/xarray-0.21.0[${PYTHON_USEDEP}]
- >=dev-python/xlrd-2.0.1[${PYTHON_USEDEP}]
- >=dev-python/xlsxwriter-1.4.3[${PYTHON_USEDEP}]
- >=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}]
- !hppa? (
- $(python_gen_cond_dep '
- dev-python/statsmodels[${PYTHON_USEDEP}]
- ' python3_{8..10} )
- >=dev-python/scipy-1.7.1[${PYTHON_USEDEP}]
- )
- X? (
- || (
- >=dev-python/PyQt5-5.15.1[${PYTHON_USEDEP}]
- >=dev-python/QtPy-2.2.0[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
- )
-"
-COMMON_DEPEND="
- >=dev-python/numpy-1.23.2[${PYTHON_USEDEP}]
- >=dev-python/python-dateutil-2.8.2[${PYTHON_USEDEP}]
- >=dev-python/pytz-2020.1[${PYTHON_USEDEP}]
-"
-# <cython-3: bug #898706
-BDEPEND="
- ${COMMON_DEPEND}
- >=dev-python/cython-0.29.33[${PYTHON_USEDEP}]
- <dev-python/cython-3[${PYTHON_USEDEP}]
- >=dev-python/versioneer-0.28[${PYTHON_USEDEP}]
- doc? (
- ${VIRTUALX_DEPEND}
- >=dev-python/beautifulsoup4-4.9.3[${PYTHON_USEDEP}]
- >=dev-python/html5lib-1.1[${PYTHON_USEDEP}]
- dev-python/ipython[${PYTHON_USEDEP}]
- >=dev-python/lxml-4.6.3[${PYTHON_USEDEP}]
- >=dev-python/matplotlib-3.6.1[${PYTHON_USEDEP}]
- dev-python/nbsphinx[${PYTHON_USEDEP}]
- >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}]
- >=dev-python/openpyxl-3.0.7[${PYTHON_USEDEP}]
- >=dev-python/tables-3.6.1[${PYTHON_USEDEP}]
- dev-python/pytz[${PYTHON_USEDEP}]
- dev-python/rpy[${PYTHON_USEDEP}]
- dev-python/sphinx[${PYTHON_USEDEP}]
- >=dev-python/xlrd-2.0.1[${PYTHON_USEDEP}]
- dev-python/xlwt[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]
- virtual/pandoc
- x11-misc/xclip
- )
- test? (
- ${VIRTUALX_DEPEND}
- ${RECOMMENDED_DEPEND}
- ${OPTIONAL_DEPEND}
- >=dev-python/beautifulsoup4-4.9.3[${PYTHON_USEDEP}]
- >=dev-python/hypothesis-6.34.2[${PYTHON_USEDEP}]
- >=dev-python/openpyxl-3.0.7[${PYTHON_USEDEP}]
- >=dev-python/pymysql-1.0.2[${PYTHON_USEDEP}]
- >=dev-python/pytest-asyncio-0.17.0[${PYTHON_USEDEP}]
- >=dev-python/pytest-xdist-2.2.0[${PYTHON_USEDEP}]
- >=dev-python/psycopg-2.8.6:2[${PYTHON_USEDEP}]
- >=dev-python/xlsxwriter-1.4.3[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
-"
-# dev-python/statsmodels invokes a circular dep
-# hence rm from doc? ( ), again
-RDEPEND="
- ${COMMON_DEPEND}
- !minimal? ( ${RECOMMENDED_DEPEND} )
- full-support? ( ${OPTIONAL_DEPEND} )
-"
-
-python_prepare_all() {
- # Prevent un-needed download during build
- sed -e "/^ 'sphinx.ext.intersphinx',/d" \
- -i doc/source/conf.py || die
-
- # unnecessary with system tzdata
- sed -i -e '/tzdata/d' pyproject.toml || die
-
- distutils-r1_python_prepare_all
-}
-
-python_compile() {
- distutils-r1_python_compile -j1
-}
-
-python_compile_all() {
- # To build docs the need be located in $BUILD_DIR,
- # else PYTHONPATH points to unusable modules.
- if use doc; then
- cd "${BUILD_DIR}"/lib || die
- cp -ar "${S}"/doc . && cd doc || die
- LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html
- fi
-}
-
-src_test() {
- virtx distutils-r1_src_test
-}
-
-python_test() {
- local EPYTEST_DESELECT=(
- # test for rounding errors, fails if we have better precision
- # e.g. on amd64 with FMA or on arm64
- # https://github.com/pandas-dev/pandas/issues/38921
- pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues
-
- # TODO
- pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated
- pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated_direct
- pandas/tests/io/test_clipboard.py::TestClipboard::test_raw_roundtrip
- pandas/tests/copy_view/test_internals.py::test_switch_options
-
- # TODO: xdist?
- pandas/tests/test_expressions.py::TestExpressions::test_run_binary
-
- # TODO: these require a running db server
- pandas/tests/io/test_sql.py::TestMySQLAlchemy
- pandas/tests/io/test_sql.py::TestMySQLAlchemyConn
- pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy
- pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn
-
- # OOMs
- pandas/tests/io/parser/test_c_parser_only.py::test_bytes_exceed_2gb
-
- # xarray version incompatibility
- pandas/tests/test_downstream.py::test_xarray_cftimeindex_nearest
-
- # warning from dask
- pandas/tests/test_downstream.py::test_construct_dask_float_array_int_dtype_match_ndarray
-
- # TODO: mpl incompatibility?
- pandas/tests/plotting/frame/test_frame.py::TestDataFramePlots::test_plain_axes
- )
-
- local -x LC_ALL=C.UTF-8
- cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
- "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
- epytest pandas --skip-slow --skip-network -m "not single" \
- -n "$(makeopts_jobs)" || die "Tests failed with ${EPYTHON}"
-}
-
-python_install_all() {
- if use doc; then
- dodoc -r "${BUILD_DIR}"/lib/doc/build/html
- einfo "An initial build of docs is absent of references to statsmodels"
- einfo "due to circular dependency. To have them included, emerge"
- einfo "statsmodels next and re-emerge pandas with USE doc"
- fi
-
- distutils-r1_python_install_all
-}
-
-pkg_postinst() {
- optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
- optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1"
- optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml
- optfeature "for msgpack compression using blosc" dev-python/blosc
- optfeature "Template engine for conditional HTML formatting" dev-python/jinja
- optfeature "Plotting support" dev-python/matplotlib
- optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.7" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
- optfeature "necessary for HDF5-based storage" ">=dev-python/tables-3.6.1"
- optfeature "R I/O support" dev-python/rpy
- optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
- optfeature "SQL database support" ">=dev-python/sqlalchemy-1.4.16"
- optfeature "miscellaneous statistical functions" dev-python/scipy
- optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/QtPy dev-python/pygtk x11-misc/xclip x11-misc/xsel
-}
diff --git a/dev-python/pandas/pandas-2.0.1.ebuild b/dev-python/pandas/pandas-2.0.1.ebuild
deleted file mode 100644
index e8cf267c330c..000000000000
--- a/dev-python/pandas/pandas-2.0.1.ebuild
+++ /dev/null
@@ -1,224 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_EXT=1
-DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_{10..11} )
-PYTHON_REQ_USE="threads(+)"
-
-VIRTUALX_REQUIRED="manual"
-
-inherit distutils-r1 multiprocessing optfeature virtualx
-
-DESCRIPTION="Powerful data structures for data analysis and statistics"
-HOMEPAGE="
- https://pandas.pydata.org/
- https://github.com/pandas-dev/pandas/
- https://pypi.org/project/pandas/
-"
-SRC_URI="
- https://github.com/pandas-dev/pandas/releases/download/v${PV}/${P}.tar.gz
-"
-S=${WORKDIR}/${P/_/}
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~arm64 ~ppc ~ppc64 ~riscv ~x86"
-IUSE="doc full-support minimal test X"
-RESTRICT="!test? ( test )"
-
-RECOMMENDED_DEPEND="
- >=dev-python/bottleneck-1.3.2[${PYTHON_USEDEP}]
- >=dev-python/numexpr-2.7.1[${PYTHON_USEDEP}]
-"
-
-# TODO: add pandas-gbq to the tree
-# TODO: Re-add dev-python/statsmodel[python3_11] dep once it supports python3_11
-# https://github.com/statsmodels/statsmodels/issues/8287
-OPTIONAL_DEPEND="
- >=dev-python/beautifulsoup4-4.9.3[${PYTHON_USEDEP}]
- dev-python/blosc[${PYTHON_USEDEP}]
- >=dev-python/html5lib-1.1[${PYTHON_USEDEP}]
- >=dev-python/jinja-3.0.0[${PYTHON_USEDEP}]
- >=dev-python/lxml-4.6.3[${PYTHON_USEDEP}]
- >=dev-python/matplotlib-3.6.1[${PYTHON_USEDEP}]
- >=dev-python/openpyxl-3.0.7[${PYTHON_USEDEP}]
- >=dev-python/sqlalchemy-1.4.16[${PYTHON_USEDEP}]
- >=dev-python/tables-3.6.1[${PYTHON_USEDEP}]
- >=dev-python/tabulate-0.8.9[${PYTHON_USEDEP}]
- >=dev-python/xarray-0.21.0[${PYTHON_USEDEP}]
- >=dev-python/xlrd-2.0.1[${PYTHON_USEDEP}]
- >=dev-python/xlsxwriter-1.4.3[${PYTHON_USEDEP}]
- >=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}]
- !hppa? (
- $(python_gen_cond_dep '
- dev-python/statsmodels[${PYTHON_USEDEP}]
- ' python3_{8..10} )
- >=dev-python/scipy-1.7.1[${PYTHON_USEDEP}]
- )
- X? (
- || (
- >=dev-python/PyQt5-5.15.1[${PYTHON_USEDEP}]
- >=dev-python/QtPy-2.2.0[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
- )
-"
-DEPEND="
- >=dev-python/numpy-1.23.2[${PYTHON_USEDEP}]
-"
-COMMON_DEPEND="
- ${DEPEND}
- >=dev-python/python-dateutil-2.8.2[${PYTHON_USEDEP}]
- >=dev-python/pytz-2020.1[${PYTHON_USEDEP}]
-"
-# <cython-3: bug #898706
-BDEPEND="
- ${COMMON_DEPEND}
- >=dev-python/cython-0.29.33[${PYTHON_USEDEP}]
- <dev-python/cython-3[${PYTHON_USEDEP}]
- >=dev-python/versioneer-0.28[${PYTHON_USEDEP}]
- doc? (
- ${VIRTUALX_DEPEND}
- >=dev-python/beautifulsoup4-4.9.3[${PYTHON_USEDEP}]
- >=dev-python/html5lib-1.1[${PYTHON_USEDEP}]
- dev-python/ipython[${PYTHON_USEDEP}]
- >=dev-python/lxml-4.6.3[${PYTHON_USEDEP}]
- >=dev-python/matplotlib-3.6.1[${PYTHON_USEDEP}]
- dev-python/nbsphinx[${PYTHON_USEDEP}]
- >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}]
- >=dev-python/openpyxl-3.0.7[${PYTHON_USEDEP}]
- >=dev-python/tables-3.6.1[${PYTHON_USEDEP}]
- dev-python/pytz[${PYTHON_USEDEP}]
- dev-python/rpy[${PYTHON_USEDEP}]
- dev-python/sphinx[${PYTHON_USEDEP}]
- >=dev-python/xlrd-2.0.1[${PYTHON_USEDEP}]
- dev-python/xlwt[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]
- virtual/pandoc
- x11-misc/xclip
- )
- test? (
- ${VIRTUALX_DEPEND}
- ${RECOMMENDED_DEPEND}
- ${OPTIONAL_DEPEND}
- >=dev-python/beautifulsoup4-4.9.3[${PYTHON_USEDEP}]
- >=dev-python/hypothesis-6.34.2[${PYTHON_USEDEP}]
- >=dev-python/openpyxl-3.0.7[${PYTHON_USEDEP}]
- >=dev-python/pymysql-1.0.2[${PYTHON_USEDEP}]
- >=dev-python/pytest-asyncio-0.17.0[${PYTHON_USEDEP}]
- >=dev-python/pytest-xdist-2.2.0[${PYTHON_USEDEP}]
- >=dev-python/psycopg-2.8.6:2[${PYTHON_USEDEP}]
- >=dev-python/xlsxwriter-1.4.3[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
-"
-# dev-python/statsmodels invokes a circular dep
-# hence rm from doc? ( ), again
-RDEPEND="
- ${COMMON_DEPEND}
- !minimal? ( ${RECOMMENDED_DEPEND} )
- full-support? ( ${OPTIONAL_DEPEND} )
-"
-
-python_prepare_all() {
- # Prevent un-needed download during build
- sed -e "/^ 'sphinx.ext.intersphinx',/d" \
- -i doc/source/conf.py || die
-
- # unnecessary with system tzdata
- sed -i -e '/tzdata/d' pyproject.toml || die
-
- distutils-r1_python_prepare_all
-}
-
-python_compile() {
- distutils-r1_python_compile -j1
-}
-
-python_compile_all() {
- # To build docs the need be located in $BUILD_DIR,
- # else PYTHONPATH points to unusable modules.
- if use doc; then
- cd "${BUILD_DIR}"/lib || die
- cp -ar "${S}"/doc . && cd doc || die
- LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html
- fi
-}
-
-src_test() {
- virtx distutils-r1_src_test
-}
-
-python_test() {
- local EPYTEST_DESELECT=(
- # test for rounding errors, fails if we have better precision
- # e.g. on amd64 with FMA or on arm64
- # https://github.com/pandas-dev/pandas/issues/38921
- pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues
-
- # TODO
- pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated
- pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated_direct
- pandas/tests/io/test_clipboard.py::TestClipboard::test_raw_roundtrip
- pandas/tests/copy_view/test_internals.py::test_switch_options
-
- # TODO: xdist?
- pandas/tests/test_expressions.py::TestExpressions::test_run_binary
-
- # TODO: these require a running db server
- pandas/tests/io/test_sql.py::TestMySQLAlchemy
- pandas/tests/io/test_sql.py::TestMySQLAlchemyConn
- pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy
- pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn
-
- # OOMs
- pandas/tests/io/parser/test_c_parser_only.py::test_bytes_exceed_2gb
-
- # xarray version incompatibility
- pandas/tests/test_downstream.py::test_xarray_cftimeindex_nearest
-
- # warning from dask
- pandas/tests/test_downstream.py::test_construct_dask_float_array_int_dtype_match_ndarray
-
- # TODO: mpl incompatibility?
- pandas/tests/plotting/frame/test_frame.py::TestDataFramePlots::test_plain_axes
- )
-
- local -x LC_ALL=C.UTF-8
- cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
- "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
- epytest pandas --skip-slow --skip-network -m "not single" \
- -n "$(makeopts_jobs)" || die "Tests failed with ${EPYTHON}"
-}
-
-python_install_all() {
- if use doc; then
- dodoc -r "${BUILD_DIR}"/lib/doc/build/html
- einfo "An initial build of docs is absent of references to statsmodels"
- einfo "due to circular dependency. To have them included, emerge"
- einfo "statsmodels next and re-emerge pandas with USE doc"
- fi
-
- distutils-r1_python_install_all
-}
-
-pkg_postinst() {
- optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
- optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1"
- optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml
- optfeature "for msgpack compression using blosc" dev-python/blosc
- optfeature "Template engine for conditional HTML formatting" dev-python/jinja
- optfeature "Plotting support" dev-python/matplotlib
- optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.7" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
- optfeature "necessary for HDF5-based storage" ">=dev-python/tables-3.6.1"
- optfeature "R I/O support" dev-python/rpy
- optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
- optfeature "SQL database support" ">=dev-python/sqlalchemy-1.4.16"
- optfeature "miscellaneous statistical functions" dev-python/scipy
- optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/QtPy dev-python/pygtk x11-misc/xclip x11-misc/xsel
-}
diff --git a/dev-python/pandas/pandas-2.0.2.ebuild b/dev-python/pandas/pandas-2.0.2.ebuild
deleted file mode 100644
index 05a58484e17d..000000000000
--- a/dev-python/pandas/pandas-2.0.2.ebuild
+++ /dev/null
@@ -1,227 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_EXT=1
-DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_{10..11} )
-PYTHON_REQ_USE="threads(+)"
-
-VIRTUALX_REQUIRED="manual"
-
-inherit distutils-r1 multiprocessing optfeature virtualx
-
-DESCRIPTION="Powerful data structures for data analysis and statistics"
-HOMEPAGE="
- https://pandas.pydata.org/
- https://github.com/pandas-dev/pandas/
- https://pypi.org/project/pandas/
-"
-SRC_URI="
- https://github.com/pandas-dev/pandas/releases/download/v${PV}/${P}.tar.gz
-"
-S=${WORKDIR}/${P/_/}
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~arm64 ~ppc ~ppc64 ~riscv ~x86"
-IUSE="doc full-support minimal test X"
-RESTRICT="!test? ( test )"
-
-RECOMMENDED_DEPEND="
- >=dev-python/bottleneck-1.3.2[${PYTHON_USEDEP}]
- >=dev-python/numexpr-2.7.1[${PYTHON_USEDEP}]
-"
-
-# TODO: add pandas-gbq to the tree
-# TODO: Re-add dev-python/statsmodel[python3_11] dep once it supports python3_11
-# https://github.com/statsmodels/statsmodels/issues/8287
-OPTIONAL_DEPEND="
- >=dev-python/beautifulsoup4-4.9.3[${PYTHON_USEDEP}]
- dev-python/blosc[${PYTHON_USEDEP}]
- >=dev-python/html5lib-1.1[${PYTHON_USEDEP}]
- >=dev-python/jinja-3.0.0[${PYTHON_USEDEP}]
- >=dev-python/lxml-4.6.3[${PYTHON_USEDEP}]
- >=dev-python/matplotlib-3.6.1[${PYTHON_USEDEP}]
- >=dev-python/openpyxl-3.0.7[${PYTHON_USEDEP}]
- >=dev-python/sqlalchemy-1.4.16[${PYTHON_USEDEP}]
- >=dev-python/tables-3.6.1[${PYTHON_USEDEP}]
- >=dev-python/tabulate-0.8.9[${PYTHON_USEDEP}]
- >=dev-python/xarray-0.21.0[${PYTHON_USEDEP}]
- >=dev-python/xlrd-2.0.1[${PYTHON_USEDEP}]
- >=dev-python/xlsxwriter-1.4.3[${PYTHON_USEDEP}]
- >=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}]
- !hppa? (
- $(python_gen_cond_dep '
- dev-python/statsmodels[${PYTHON_USEDEP}]
- ' python3_{8..10} )
- >=dev-python/scipy-1.7.1[${PYTHON_USEDEP}]
- )
- X? (
- || (
- >=dev-python/PyQt5-5.15.1[${PYTHON_USEDEP}]
- >=dev-python/QtPy-2.2.0[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
- )
-"
-DEPEND="
- >=dev-python/numpy-1.23.2[${PYTHON_USEDEP}]
-"
-COMMON_DEPEND="
- ${DEPEND}
- >=dev-python/python-dateutil-2.8.2[${PYTHON_USEDEP}]
- >=dev-python/pytz-2020.1[${PYTHON_USEDEP}]
-"
-# <cython-3: bug #898706
-BDEPEND="
- ${COMMON_DEPEND}
- >=dev-python/cython-0.29.33[${PYTHON_USEDEP}]
- <dev-python/cython-3[${PYTHON_USEDEP}]
- >=dev-python/versioneer-0.28[${PYTHON_USEDEP}]
- doc? (
- ${VIRTUALX_DEPEND}
- >=dev-python/beautifulsoup4-4.9.3[${PYTHON_USEDEP}]
- >=dev-python/html5lib-1.1[${PYTHON_USEDEP}]
- dev-python/ipython[${PYTHON_USEDEP}]
- >=dev-python/lxml-4.6.3[${PYTHON_USEDEP}]
- >=dev-python/matplotlib-3.6.1[${PYTHON_USEDEP}]
- dev-python/nbsphinx[${PYTHON_USEDEP}]
- >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}]
- >=dev-python/openpyxl-3.0.7[${PYTHON_USEDEP}]
- >=dev-python/tables-3.6.1[${PYTHON_USEDEP}]
- dev-python/pytz[${PYTHON_USEDEP}]
- dev-python/rpy[${PYTHON_USEDEP}]
- dev-python/sphinx[${PYTHON_USEDEP}]
- >=dev-python/xlrd-2.0.1[${PYTHON_USEDEP}]
- dev-python/xlwt[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]
- virtual/pandoc
- x11-misc/xclip
- )
- test? (
- ${VIRTUALX_DEPEND}
- ${RECOMMENDED_DEPEND}
- ${OPTIONAL_DEPEND}
- >=dev-python/beautifulsoup4-4.9.3[${PYTHON_USEDEP}]
- >=dev-python/hypothesis-6.34.2[${PYTHON_USEDEP}]
- >=dev-python/openpyxl-3.0.7[${PYTHON_USEDEP}]
- >=dev-python/pymysql-1.0.2[${PYTHON_USEDEP}]
- >=dev-python/pytest-asyncio-0.17.0[${PYTHON_USEDEP}]
- >=dev-python/pytest-xdist-2.2.0[${PYTHON_USEDEP}]
- >=dev-python/psycopg-2.8.6:2[${PYTHON_USEDEP}]
- >=dev-python/xlsxwriter-1.4.3[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
-"
-# dev-python/statsmodels invokes a circular dep
-# hence rm from doc? ( ), again
-RDEPEND="
- ${COMMON_DEPEND}
- !minimal? ( ${RECOMMENDED_DEPEND} )
- full-support? ( ${OPTIONAL_DEPEND} )
-"
-
-python_prepare_all() {
- # Prevent un-needed download during build
- sed -e "/^ 'sphinx.ext.intersphinx',/d" \
- -i doc/source/conf.py || die
-
- # unnecessary with system tzdata
- sed -i -e '/tzdata/d' pyproject.toml || die
-
- distutils-r1_python_prepare_all
-}
-
-python_compile() {
- distutils-r1_python_compile -j1
-}
-
-python_compile_all() {
- # To build docs the need be located in $BUILD_DIR,
- # else PYTHONPATH points to unusable modules.
- if use doc; then
- cd "${BUILD_DIR}"/lib || die
- cp -ar "${S}"/doc . && cd doc || die
- LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html
- fi
-}
-
-src_test() {
- virtx distutils-r1_src_test
-}
-
-python_test() {
- local EPYTEST_DESELECT=(
- # test for rounding errors, fails if we have better precision
- # e.g. on amd64 with FMA or on arm64
- # https://github.com/pandas-dev/pandas/issues/38921
- pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues
-
- # TODO
- pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated
- pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated_direct
- pandas/tests/io/test_clipboard.py::TestClipboard::test_raw_roundtrip
- pandas/tests/copy_view/test_internals.py::test_switch_options
-
- # TODO: xdist?
- pandas/tests/test_expressions.py::TestExpressions::test_run_binary
-
- # TODO: these require a running db server
- pandas/tests/io/test_sql.py::TestMySQLAlchemy
- pandas/tests/io/test_sql.py::TestMySQLAlchemyConn
- pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy
- pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn
-
- # OOMs
- pandas/tests/io/parser/test_c_parser_only.py::test_bytes_exceed_2gb
-
- # xarray version incompatibility
- pandas/tests/test_downstream.py::test_xarray_cftimeindex_nearest
-
- # warning from dask
- pandas/tests/test_downstream.py::test_construct_dask_float_array_int_dtype_match_ndarray
-
- # TODO: mpl incompatibility?
- pandas/tests/plotting/frame/test_frame.py::TestDataFramePlots::test_plain_axes
-
- # crashes
- pandas/tests/io/pytables/test_file_handling.py::test_complibs
- )
-
- local -x LC_ALL=C.UTF-8
- cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
- "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
- epytest pandas --skip-slow --skip-network -m "not single" \
- -n "$(makeopts_jobs)" || die "Tests failed with ${EPYTHON}"
-}
-
-python_install_all() {
- if use doc; then
- dodoc -r "${BUILD_DIR}"/lib/doc/build/html
- einfo "An initial build of docs is absent of references to statsmodels"
- einfo "due to circular dependency. To have them included, emerge"
- einfo "statsmodels next and re-emerge pandas with USE doc"
- fi
-
- distutils-r1_python_install_all
-}
-
-pkg_postinst() {
- optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
- optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1"
- optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml
- optfeature "for msgpack compression using blosc" dev-python/blosc
- optfeature "Template engine for conditional HTML formatting" dev-python/jinja
- optfeature "Plotting support" dev-python/matplotlib
- optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.7" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
- optfeature "necessary for HDF5-based storage" ">=dev-python/tables-3.6.1"
- optfeature "R I/O support" dev-python/rpy
- optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
- optfeature "SQL database support" ">=dev-python/sqlalchemy-1.4.16"
- optfeature "miscellaneous statistical functions" dev-python/scipy
- optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/QtPy dev-python/pygtk x11-misc/xclip x11-misc/xsel
-}
diff --git a/dev-python/pandas/pandas-2.0.3-r1.ebuild b/dev-python/pandas/pandas-2.0.3-r1.ebuild
deleted file mode 100644
index 62b3977bb529..000000000000
--- a/dev-python/pandas/pandas-2.0.3-r1.ebuild
+++ /dev/null
@@ -1,259 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_EXT=1
-DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_{10..11} )
-PYTHON_REQ_USE="threads(+)"
-
-VIRTUALX_REQUIRED="manual"
-
-inherit distutils-r1 multiprocessing optfeature virtualx
-
-DESCRIPTION="Powerful data structures for data analysis and statistics"
-HOMEPAGE="
- https://pandas.pydata.org/
- https://github.com/pandas-dev/pandas/
- https://pypi.org/project/pandas/
-"
-SRC_URI="
- https://github.com/pandas-dev/pandas/releases/download/v${PV}/${P}.tar.gz
-"
-S=${WORKDIR}/${P/_/}
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="amd64 arm arm64 ~ppc ppc64 ~riscv x86 ~arm64-macos ~x64-macos"
-IUSE="doc full-support minimal test X"
-RESTRICT="!test? ( test )"
-
-RECOMMENDED_DEPEND="
- >=dev-python/bottleneck-1.3.2[${PYTHON_USEDEP}]
- >=dev-python/numexpr-2.7.1[${PYTHON_USEDEP}]
-"
-
-# TODO: add pandas-gbq to the tree
-# TODO: Re-add dev-python/statsmodel[python3_11] dep once it supports python3_11
-# https://github.com/statsmodels/statsmodels/issues/8287
-OPTIONAL_DEPEND="
- >=dev-python/beautifulsoup4-4.9.3[${PYTHON_USEDEP}]
- dev-python/blosc[${PYTHON_USEDEP}]
- >=dev-python/html5lib-1.1[${PYTHON_USEDEP}]
- >=dev-python/jinja-3.0.0[${PYTHON_USEDEP}]
- >=dev-python/lxml-4.6.3[${PYTHON_USEDEP}]
- >=dev-python/matplotlib-3.6.1[${PYTHON_USEDEP}]
- >=dev-python/openpyxl-3.0.7[${PYTHON_USEDEP}]
- >=dev-python/sqlalchemy-1.4.16[${PYTHON_USEDEP}]
- >=dev-python/tables-3.6.1[${PYTHON_USEDEP}]
- >=dev-python/tabulate-0.8.9[${PYTHON_USEDEP}]
- >=dev-python/xarray-0.21.0[${PYTHON_USEDEP}]
- >=dev-python/xlrd-2.0.1[${PYTHON_USEDEP}]
- >=dev-python/xlsxwriter-1.4.3[${PYTHON_USEDEP}]
- >=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}]
- !hppa? (
- $(python_gen_cond_dep '
- dev-python/statsmodels[${PYTHON_USEDEP}]
- ' python3_{8..10} )
- >=dev-python/scipy-1.7.1[${PYTHON_USEDEP}]
- )
- X? (
- || (
- >=dev-python/PyQt5-5.15.1[${PYTHON_USEDEP}]
- >=dev-python/QtPy-2.2.0[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
- )
-"
-DEPEND="
- >=dev-python/numpy-1.23.2[${PYTHON_USEDEP}]
-"
-COMMON_DEPEND="
- ${DEPEND}
- >=dev-python/python-dateutil-2.8.2[${PYTHON_USEDEP}]
- >=dev-python/pytz-2020.1[${PYTHON_USEDEP}]
-"
-# <cython-3: bug #898706
-BDEPEND="
- ${COMMON_DEPEND}
- >=dev-python/cython-0.29.33[${PYTHON_USEDEP}]
- <dev-python/cython-3[${PYTHON_USEDEP}]
- >=dev-python/versioneer-0.28[${PYTHON_USEDEP}]
- doc? (
- ${VIRTUALX_DEPEND}
- >=dev-python/beautifulsoup4-4.9.3[${PYTHON_USEDEP}]
- >=dev-python/html5lib-1.1[${PYTHON_USEDEP}]
- dev-python/ipython[${PYTHON_USEDEP}]
- >=dev-python/lxml-4.6.3[${PYTHON_USEDEP}]
- >=dev-python/matplotlib-3.6.1[${PYTHON_USEDEP}]
- dev-python/nbsphinx[${PYTHON_USEDEP}]
- >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}]
- >=dev-python/openpyxl-3.0.7[${PYTHON_USEDEP}]
- >=dev-python/tables-3.6.1[${PYTHON_USEDEP}]
- dev-python/pytz[${PYTHON_USEDEP}]
- dev-python/rpy[${PYTHON_USEDEP}]
- dev-python/sphinx[${PYTHON_USEDEP}]
- >=dev-python/xlrd-2.0.1[${PYTHON_USEDEP}]
- dev-python/xlwt[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]
- virtual/pandoc
- x11-misc/xclip
- )
- test? (
- ${VIRTUALX_DEPEND}
- ${RECOMMENDED_DEPEND}
- ${OPTIONAL_DEPEND}
- >=dev-python/beautifulsoup4-4.9.3[${PYTHON_USEDEP}]
- >=dev-python/hypothesis-6.34.2[${PYTHON_USEDEP}]
- >=dev-python/openpyxl-3.0.7[${PYTHON_USEDEP}]
- >=dev-python/pymysql-1.0.2[${PYTHON_USEDEP}]
- >=dev-python/pytest-7.3.2[${PYTHON_USEDEP}]
- >=dev-python/pytest-asyncio-0.17.0[${PYTHON_USEDEP}]
- >=dev-python/pytest-xdist-2.2.0[${PYTHON_USEDEP}]
- >=dev-python/psycopg-2.8.6:2[${PYTHON_USEDEP}]
- >=dev-python/xlsxwriter-1.4.3[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
-"
-# dev-python/statsmodels invokes a circular dep
-# hence rm from doc? ( ), again
-RDEPEND="
- ${COMMON_DEPEND}
- dev-python/tzdata[${PYTHON_USEDEP}]
- !minimal? ( ${RECOMMENDED_DEPEND} )
- full-support? ( ${OPTIONAL_DEPEND} )
-"
-
-python_prepare_all() {
- # Prevent un-needed download during build
- sed -e "/^ 'sphinx.ext.intersphinx',/d" \
- -i doc/source/conf.py || die
-
- distutils-r1_python_prepare_all
-}
-
-python_compile() {
- distutils-r1_python_compile -j1
-}
-
-python_compile_all() {
- # To build docs the need be located in $BUILD_DIR,
- # else PYTHONPATH points to unusable modules.
- if use doc; then
- cd "${BUILD_DIR}"/lib || die
- cp -ar "${S}"/doc . && cd doc || die
- LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html
- fi
-}
-
-src_test() {
- virtx distutils-r1_src_test
-}
-
-python_test() {
- local EPYTEST_DESELECT=(
- # test for rounding errors, fails if we have better precision
- # e.g. on amd64 with FMA or on arm64
- # https://github.com/pandas-dev/pandas/issues/38921
- pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues
-
- # TODO
- pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated
- pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated_direct
- pandas/tests/io/test_clipboard.py::TestClipboard::test_raw_roundtrip
- pandas/tests/copy_view/test_internals.py::test_switch_options
-
- # TODO: xdist?
- pandas/tests/test_expressions.py::TestExpressions::test_run_binary
-
- # TODO: these require a running db server
- pandas/tests/io/test_sql.py::TestMySQLAlchemy
- pandas/tests/io/test_sql.py::TestMySQLAlchemyConn
- pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy
- pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn
-
- # OOMs
- pandas/tests/io/parser/test_c_parser_only.py::test_bytes_exceed_2gb
-
- # xarray version incompatibility
- pandas/tests/test_downstream.py::test_xarray_cftimeindex_nearest
-
- # warning from dask
- pandas/tests/test_downstream.py::test_construct_dask_float_array_int_dtype_match_ndarray
-
- # TODO: mpl incompatibility?
- pandas/tests/plotting/frame/test_frame.py::TestDataFramePlots::test_plain_axes
-
- # crashes
- pandas/tests/io/pytables/test_file_handling.py::test_complibs
-
- # deprecation warning
- pandas/tests/io/pytables/test_retain_attributes.py::test_retain_index_attributes2
-
- # Needs 64-bit time_t (TODO: split into 32-bit arch only section)
- pandas/tests/tseries/offsets/test_year.py::test_add_out_of_pydatetime_range
- 'pandas/tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessDay]'
- 'pandas/tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessHour]'
- 'pandas/tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessMonthEnd]'
- 'pandas/tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessMonthBegin]'
- 'pandas/tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BQuarterEnd]'
- 'pandas/tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BQuarterBegin]'
- 'pandas/tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessDay]'
- 'pandas/tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessHour]'
- 'pandas/tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessMonthEnd]'
- 'pandas/tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessMonthBegin]'
- 'pandas/tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-MonthEnd]'
- 'pandas/tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-MonthBegin]'
- 'pandas/tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-SemiMonthBegin]'
- 'pandas/tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-SemiMonthEnd]'
- 'pandas/tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-QuarterEnd]'
- 'pandas/tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-LastWeekOfMonth]'
- 'pandas/tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-WeekOfMonth]'
- 'pandas/tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-Week]'
-
- # alignment issues: bug #911660 (fixed upstream but not yet in a release)
- # https://github.com/pandas-dev/pandas/issues/54391
- pandas/tests/io/sas/test_byteswap.py::test_float_byteswap
-
- # hdf / pytables have alignment problems: bug #911660
- # https://github.com/pandas-dev/pandas/issues/54396
- pandas/tests/io/pytables/test_append.py::test_append_frame_column_oriented
- pandas/tests/io/pytables/test_store.py::test_select_filter_corner
- )
-
- local -x LC_ALL=C.UTF-8
- cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
- "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
- epytest pandas --skip-slow --skip-network -m "not single" \
- -n "$(makeopts_jobs)" || die "Tests failed with ${EPYTHON}"
-}
-
-python_install_all() {
- if use doc; then
- dodoc -r "${BUILD_DIR}"/lib/doc/build/html
- einfo "An initial build of docs is absent of references to statsmodels"
- einfo "due to circular dependency. To have them included, emerge"
- einfo "statsmodels next and re-emerge pandas with USE doc"
- fi
-
- distutils-r1_python_install_all
-}
-
-pkg_postinst() {
- optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
- optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1"
- optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml
- optfeature "for msgpack compression using blosc" dev-python/blosc
- optfeature "Template engine for conditional HTML formatting" dev-python/jinja
- optfeature "Plotting support" dev-python/matplotlib
- optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.7" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
- optfeature "necessary for HDF5-based storage" ">=dev-python/tables-3.6.1"
- optfeature "R I/O support" dev-python/rpy
- optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
- optfeature "SQL database support" ">=dev-python/sqlalchemy-1.4.16"
- optfeature "miscellaneous statistical functions" dev-python/scipy
- optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/QtPy dev-python/pygtk x11-misc/xclip x11-misc/xsel
-}
diff --git a/dev-python/pandas/pandas-2.1.0.ebuild b/dev-python/pandas/pandas-2.1.0.ebuild
deleted file mode 100644
index a7309112c6e0..000000000000
--- a/dev-python/pandas/pandas-2.1.0.ebuild
+++ /dev/null
@@ -1,202 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_EXT=1
-DISTUTILS_USE_PEP517=meson-python
-PYTHON_COMPAT=( python3_{10..11} )
-PYTHON_REQ_USE="threads(+)"
-
-VIRTUALX_REQUIRED="manual"
-
-inherit distutils-r1 multiprocessing optfeature pypi virtualx
-
-DESCRIPTION="Powerful data structures for data analysis and statistics"
-HOMEPAGE="
- https://pandas.pydata.org/
- https://github.com/pandas-dev/pandas/
- https://pypi.org/project/pandas/
-"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~arm ~arm64 ~ppc ~ppc64 ~riscv ~x86 ~arm64-macos ~x64-macos"
-IUSE="full-support minimal test X"
-RESTRICT="!test? ( test )"
-
-RECOMMENDED_DEPEND="
- >=dev-python/bottleneck-1.3.4[${PYTHON_USEDEP}]
- >=dev-python/numexpr-2.8.0[${PYTHON_USEDEP}]
-"
-
-# TODO: add pandas-gbq to the tree
-# TODO: Re-add dev-python/statsmodel[python3_11] dep once it supports python3_11
-# https://github.com/statsmodels/statsmodels/issues/8287
-OPTIONAL_DEPEND="
- >=dev-python/beautifulsoup4-4.11.1[${PYTHON_USEDEP}]
- dev-python/blosc[${PYTHON_USEDEP}]
- >=dev-python/html5lib-1.1[${PYTHON_USEDEP}]
- >=dev-python/jinja-3.1.2[${PYTHON_USEDEP}]
- >=dev-python/lxml-4.8.0[${PYTHON_USEDEP}]
- >=dev-python/matplotlib-3.6.1[${PYTHON_USEDEP}]
- >=dev-python/openpyxl-3.0.7[${PYTHON_USEDEP}]
- >=dev-python/sqlalchemy-1.4.36[${PYTHON_USEDEP}]
- >=dev-python/tables-3.7.0[${PYTHON_USEDEP}]
- >=dev-python/tabulate-0.8.10[${PYTHON_USEDEP}]
- >=dev-python/xarray-2022.3.0[${PYTHON_USEDEP}]
- >=dev-python/xlrd-2.0.1[${PYTHON_USEDEP}]
- >=dev-python/xlsxwriter-3.0.3[${PYTHON_USEDEP}]
- >=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}]
- !hppa? (
- $(python_gen_cond_dep '
- dev-python/statsmodels[${PYTHON_USEDEP}]
- ' python3_{8..10} )
- >=dev-python/scipy-1.8.1[${PYTHON_USEDEP}]
- )
- X? (
- || (
- >=dev-python/PyQt5-5.15.6[${PYTHON_USEDEP}]
- >=dev-python/QtPy-2.2.0[${PYTHON_USEDEP}]
- x11-misc/xclip
- x11-misc/xsel
- )
- )
-"
-DEPEND="
- >=dev-python/numpy-1.23.2[${PYTHON_USEDEP}]
-"
-COMMON_DEPEND="
- ${DEPEND}
- >=dev-python/python-dateutil-2.8.2[${PYTHON_USEDEP}]
- >=dev-python/pytz-2020.1[${PYTHON_USEDEP}]
-"
-BDEPEND="
- ${COMMON_DEPEND}
- >=dev-python/cython-0.29.33[${PYTHON_USEDEP}]
- >=dev-python/versioneer-0.28[${PYTHON_USEDEP}]
- test? (
- ${VIRTUALX_DEPEND}
- ${RECOMMENDED_DEPEND}
- ${OPTIONAL_DEPEND}
- >=dev-python/beautifulsoup4-4.11.1[${PYTHON_USEDEP}]
- >=dev-python/hypothesis-6.46.1[${PYTHON_USEDEP}]
- >=dev-python/openpyxl-3.0.10[${PYTHON_USEDEP}]
- >=dev-python/pymysql-1.0.2[${PYTHON_USEDEP}]
- >=dev-python/pytest-7.3.2[${PYTHON_USEDEP}]
- >=dev-python/pytest-asyncio-0.17.0[${PYTHON_USEDEP}]
- >=dev-python/pytest-xdist-2.2.0[${PYTHON_USEDEP}]
- >=dev-python/psycopg-2.9.3:2[${PYTHON_USEDEP}]
- >=dev-python/xlsxwriter-3.0.3[${PYTHON_USEDEP}]
- sys-apps/which
- x11-misc/xclip
- x11-misc/xsel
- )
-"
-RDEPEND="
- ${COMMON_DEPEND}
- dev-python/tzdata[${PYTHON_USEDEP}]
- !minimal? ( ${RECOMMENDED_DEPEND} )
- full-support? ( ${OPTIONAL_DEPEND} )
-"
-
-PATCHES=(
- "${FILESDIR}/${P}-build-system.patch"
-)
-
-src_test() {
- virtx distutils-r1_src_test
-}
-
-python_test() {
- local EPYTEST_DESELECT=(
- # test for rounding errors, fails if we have better precision
- # e.g. on amd64 with FMA or on arm64
- # https://github.com/pandas-dev/pandas/issues/38921
- tests/window/test_rolling.py::test_rolling_var_numerical_issues
-
- # TODO; unhappy about DISPLAY?
- tests/test_downstream.py::test_seaborn
-
- # OOMs
- tests/io/parser/test_c_parser_only.py::test_bytes_exceed_2gb
-
- # TODO: numexpr says "forbidden control characters"
- tests/computation/test_eval.py::TestOperations::test_multi_line_expression_local_variable
- 'tests/computation/test_eval.py::test_query_token[numexpr-Temp(\xb0C)]'
- tests/frame/test_query_eval.py::TestDataFrameQueryBacktickQuoting::test_lots_of_operators_string
- tests/frame/test_query_eval.py::TestDataFrameQueryBacktickQuoting::test_multiple_spaces
- tests/frame/test_query_eval.py::TestDataFrameQueryBacktickQuoting::test_parenthesis
- tests/frame/test_query_eval.py::TestDataFrameQueryBacktickQuoting::test_start_with_spaces
- tests/frame/test_query_eval.py::TestDataFrameQueryNumExprPandas::test_local_syntax
- tests/frame/test_query_eval.py::TestDataFrameQueryNumExprPandas::test_local_variable_with_in
- tests/frame/test_query_eval.py::TestDataFrameQueryNumExprPandas::test_nested_scope
- tests/frame/test_query_eval.py::TestDataFrameQueryNumExprPandas::test_query_scope
-
- # TODO: missing data not covered by --no-strict-data-files?
- tests/io/xml/test_xml.py::test_empty_stylesheet
- tests/io/xml/test_xml.py::test_wrong_file_path
-
- # TODO
- tests/frame/test_arithmetic.py::TestFrameFlexArithmetic::test_floordiv_axis0_numexpr_path
-
- # deprecation warning
- tests/io/pytables/test_retain_attributes.py::test_retain_index_attributes2
-
- # Needs 64-bit time_t (TODO: split into 32-bit arch only section)
- tests/tseries/offsets/test_year.py::test_add_out_of_pydatetime_range
- 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessDay]'
- 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessHour]'
- 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessMonthEnd]'
- 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessMonthBegin]'
- 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BQuarterEnd]'
- 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BQuarterBegin]'
- 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessDay]'
- 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessHour]'
- 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessMonthEnd]'
- 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessMonthBegin]'
- 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-MonthEnd]'
- 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-MonthBegin]'
- 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-SemiMonthBegin]'
- 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-SemiMonthEnd]'
- 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-QuarterEnd]'
- 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-LastWeekOfMonth]'
- 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-WeekOfMonth]'
- 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-Week]'
-
- # hdf / pytables have alignment problems: bug #911660
- # https://github.com/pandas-dev/pandas/issues/54396
- tests/io/pytables/test_append.py::test_append_frame_column_oriented
- tests/io/pytables/test_store.py::test_select_filter_corner
- )
-
- local -x LC_ALL=C.UTF-8
- cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
- "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
- # --no-strict-data-files is necessary since upstream prevents data
- # files from even being included in GitHub archives, sigh
- # https://github.com/pandas-dev/pandas/issues/54907
- epytest pandas/tests \
- --no-strict-data-files \
- --maxfail=32 \
- -m "not single and not slow and not network" \
- -n "$(makeopts_jobs)" --dist=worksteal ||
- die "Tests failed with ${EPYTHON}"
- rm test-data.xml || die
-}
-
-pkg_postinst() {
- optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
- optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1"
- optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml
- optfeature "for msgpack compression using blosc" dev-python/blosc
- optfeature "Template engine for conditional HTML formatting" dev-python/jinja
- optfeature "Plotting support" dev-python/matplotlib
- optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.10" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
- optfeature "necessary for HDF5-based storage" ">=dev-python/tables-3.7.0"
- optfeature "R I/O support" dev-python/rpy
- optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
- optfeature "SQL database support" ">=dev-python/sqlalchemy-1.4.36"
- optfeature "miscellaneous statistical functions" dev-python/scipy
- optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/QtPy dev-python/pygtk x11-misc/xclip x11-misc/xsel
-}
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: dev-python/pandas/, dev-python/pandas/files/
@ 2024-07-10 18:52 Michał Górny
0 siblings, 0 replies; 7+ messages in thread
From: Michał Górny @ 2024-07-10 18:52 UTC (permalink / raw
To: gentoo-commits
commit: 4d36362bb14ff1d86fbfa25b09707358c75049b6
Author: Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Wed Jul 10 18:31:35 2024 +0000
Commit: Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Wed Jul 10 18:52:03 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4d36362b
dev-python/pandas: Enable py3.13
Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>
dev-python/pandas/files/pandas-2.2.2-py313.patch | 117 +++++++++++++++++++++++
dev-python/pandas/pandas-2.2.2-r1.ebuild | 7 +-
2 files changed, 123 insertions(+), 1 deletion(-)
diff --git a/dev-python/pandas/files/pandas-2.2.2-py313.patch b/dev-python/pandas/files/pandas-2.2.2-py313.patch
new file mode 100644
index 000000000000..3fe6f7d89367
--- /dev/null
+++ b/dev-python/pandas/files/pandas-2.2.2-py313.patch
@@ -0,0 +1,117 @@
+From ad0ef9233f4e6366faf9512d512ec5248ade6d5e Mon Sep 17 00:00:00 2001
+From: Lysandros Nikolaou <lisandrosnik@gmail.com>
+Date: Tue, 25 Jun 2024 03:40:22 +0200
+Subject: [PATCH] ENH: Fix Python 3.13 test failures & enable CI (#59065)
+
+* ENH: Fix Python 3.13 test failures & enable CI
+
+x-ref #58734
+
+Co-authored-by: Thomas Li <47963215+lithomas1@users.noreply.github.com>
+
+* Cast npy_intp to int to fix Windows CI
+
+---------
+
+Co-authored-by: Thomas Li <47963215+lithomas1@users.noreply.github.com>
+---
+ .github/workflows/unit-tests.yml | 4 ++--
+ pandas/_libs/src/vendored/ujson/python/objToJSON.c | 12 ++++++------
+ pandas/_libs/tslibs/offsets.pyx | 7 ++++++-
+ pandas/tests/groupby/test_groupby.py | 4 +++-
+ pandas/tests/io/parser/test_dialect.py | 2 +-
+ pandas/tests/io/test_common.py | 5 ++++-
+ pandas/tests/io/xml/test_xml.py | 2 +-
+ pandas/tests/scalar/timedelta/test_arithmetic.py | 1 +
+ 8 files changed, 24 insertions(+), 13 deletions(-)
+
+diff --git a/pandas/_libs/tslibs/offsets.pyx b/pandas/_libs/tslibs/offsets.pyx
+index c37a4b285d..5dacd7dd55 100644
+--- a/pandas/_libs/tslibs/offsets.pyx
++++ b/pandas/_libs/tslibs/offsets.pyx
+@@ -4960,7 +4960,12 @@ cpdef to_offset(freq, bint is_period=False):
+ if result is None:
+ raise ValueError(INVALID_FREQ_ERR_MSG.format(freq))
+
+- if is_period and not hasattr(result, "_period_dtype_code"):
++ try:
++ has_period_dtype_code = hasattr(result, "_period_dtype_code")
++ except ValueError:
++ has_period_dtype_code = False
++
++ if is_period and not has_period_dtype_code:
+ if isinstance(freq, str):
+ raise ValueError(f"{result.name} is not supported as period frequency")
+ else:
+diff --git a/pandas/tests/groupby/test_groupby.py b/pandas/tests/groupby/test_groupby.py
+index ed9acdd0c9..44d6340e55 100644
+--- a/pandas/tests/groupby/test_groupby.py
++++ b/pandas/tests/groupby/test_groupby.py
+@@ -2816,7 +2816,9 @@ def test_rolling_wrong_param_min_period():
+ test_df = DataFrame([name_l, val_l]).T
+ test_df.columns = ["name", "val"]
+
+- result_error_msg = r"__init__\(\) got an unexpected keyword argument 'min_period'"
++ result_error_msg = (
++ r"^[a-zA-Z._]*\(\) got an unexpected keyword argument 'min_period'"
++ )
+ with pytest.raises(TypeError, match=result_error_msg):
+ test_df.groupby("name")["val"].rolling(window=2, min_period=1).sum()
+
+diff --git a/pandas/tests/io/parser/test_dialect.py b/pandas/tests/io/parser/test_dialect.py
+index 7a72e66996..803114723b 100644
+--- a/pandas/tests/io/parser/test_dialect.py
++++ b/pandas/tests/io/parser/test_dialect.py
+@@ -26,7 +26,7 @@ def custom_dialect():
+ "escapechar": "~",
+ "delimiter": ":",
+ "skipinitialspace": False,
+- "quotechar": "~",
++ "quotechar": "`",
+ "quoting": 3,
+ }
+ return dialect_name, dialect_kwargs
+diff --git a/pandas/tests/io/test_common.py b/pandas/tests/io/test_common.py
+index 0740338686..e51f865630 100644
+--- a/pandas/tests/io/test_common.py
++++ b/pandas/tests/io/test_common.py
+@@ -485,7 +485,10 @@ class TestMMapWrapper:
+ df.to_csv(path, compression=compression_, encoding=encoding)
+
+ # reading should fail (otherwise we wouldn't need the warning)
+- msg = r"UTF-\d+ stream does not start with BOM"
++ msg = (
++ r"UTF-\d+ stream does not start with BOM|"
++ r"'utf-\d+' codec can't decode byte"
++ )
+ with pytest.raises(UnicodeError, match=msg):
+ pd.read_csv(path, compression=compression_, encoding=encoding)
+
+diff --git a/pandas/tests/io/xml/test_xml.py b/pandas/tests/io/xml/test_xml.py
+index 6f429c1ecb..900734e9f0 100644
+--- a/pandas/tests/io/xml/test_xml.py
++++ b/pandas/tests/io/xml/test_xml.py
+@@ -1044,7 +1044,7 @@ def test_utf16_encoding(xml_baby_names, parser):
+ UnicodeError,
+ match=(
+ "UTF-16 stream does not start with BOM|"
+- "'utf-16-le' codec can't decode byte"
++ "'utf-16(-le)?' codec can't decode byte"
+ ),
+ ):
+ read_xml(xml_baby_names, encoding="UTF-16", parser=parser)
+diff --git a/pandas/tests/scalar/timedelta/test_arithmetic.py b/pandas/tests/scalar/timedelta/test_arithmetic.py
+index d2fa0f722c..33ac121076 100644
+--- a/pandas/tests/scalar/timedelta/test_arithmetic.py
++++ b/pandas/tests/scalar/timedelta/test_arithmetic.py
+@@ -622,6 +622,7 @@ class TestTimedeltaMultiplicationDivision:
+ [
+ r"Invalid dtype datetime64\[D\] for __floordiv__",
+ "'dtype' is an invalid keyword argument for this function",
++ "this function got an unexpected keyword argument 'dtype'",
+ r"ufunc '?floor_divide'? cannot use operands with types",
+ ]
+ )
+--
+2.45.2
+
diff --git a/dev-python/pandas/pandas-2.2.2-r1.ebuild b/dev-python/pandas/pandas-2.2.2-r1.ebuild
index a251b3924eb6..4778a765850a 100644
--- a/dev-python/pandas/pandas-2.2.2-r1.ebuild
+++ b/dev-python/pandas/pandas-2.2.2-r1.ebuild
@@ -5,7 +5,7 @@ EAPI=8
DISTUTILS_EXT=1
DISTUTILS_USE_PEP517=meson-python
-PYTHON_COMPAT=( python3_{10..12} )
+PYTHON_COMPAT=( python3_{10..13} )
PYTHON_REQ_USE="threads(+)"
VIRTUALX_REQUIRED="manual"
@@ -101,6 +101,11 @@ RDEPEND="
EPYTEST_XDIST=1
distutils_enable_tests pytest
+PATCHES=(
+ # https://github.com/pandas-dev/pandas/pull/59065
+ "${FILESDIR}/${P}-py313.patch"
+)
+
src_test() {
virtx distutils-r1_src_test
}
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