* [gentoo-commits] repo/gentoo:master commit in: sci-biology/stride/
@ 2019-08-17 11:19 David Seifert
0 siblings, 0 replies; 6+ messages in thread
From: David Seifert @ 2019-08-17 11:19 UTC (permalink / raw
To: gentoo-commits
commit: df9c66e3f92c66049585731e041358710860dc29
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Aug 17 11:19:16 2019 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Aug 17 11:19:16 2019 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=df9c66e3
sci-biology/stride: [QA] Version the distfile
Package-Manager: Portage-2.3.71, Repoman-2.3.17
Signed-off-by: David Seifert <soap <AT> gentoo.org>
sci-biology/stride/Manifest | 2 +-
sci-biology/stride/stride-20011129-r1.ebuild | 4 ++--
2 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/sci-biology/stride/Manifest b/sci-biology/stride/Manifest
index 8e64ce6ccbf..8d9e9236f0c 100644
--- a/sci-biology/stride/Manifest
+++ b/sci-biology/stride/Manifest
@@ -1,2 +1,2 @@
+DIST stride-20011129.tar.gz 56441 BLAKE2B 4d4cd3f9f6cef997fff10571aecb70cb21056e88c5130e7dfdafe15a6fb353656d0635b4d65895ef115479a87dcf600b659455d15460344c838543a2e356bfae SHA512 cbd40fce4684728f363520540132fc1a0003126954a145d59aeff48adb20fdaa66520bd12b56ee5d2906e8ea97bf78a225204105b820f7f368aee5e790a6471b
DIST stride-20060723-update.patch.bz2 5621 BLAKE2B 266a7371c0963a996430c1f809b46196e8bf179fcf2afb4380f6eccd092c03b29d5b09b8a8438ee7848d0f411920db2e4465ef646c75a406197412f35e880179 SHA512 e06eb68b907615e12dc1a9981be157400e9ffed9391a906cb4eb3ef4067b7027c26cc600298053bfc5d2bbbebbbfefe0e6b18d0e4f6fef2172768e6f95498af1
-DIST stride.tar.gz 56441 BLAKE2B 4d4cd3f9f6cef997fff10571aecb70cb21056e88c5130e7dfdafe15a6fb353656d0635b4d65895ef115479a87dcf600b659455d15460344c838543a2e356bfae SHA512 cbd40fce4684728f363520540132fc1a0003126954a145d59aeff48adb20fdaa66520bd12b56ee5d2906e8ea97bf78a225204105b820f7f368aee5e790a6471b
diff --git a/sci-biology/stride/stride-20011129-r1.ebuild b/sci-biology/stride/stride-20011129-r1.ebuild
index c76883b861e..77a19f3ea89 100644
--- a/sci-biology/stride/stride-20011129-r1.ebuild
+++ b/sci-biology/stride/stride-20011129-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -8,7 +8,7 @@ inherit eutils toolchain-funcs
DESCRIPTION="Protein secondary structure assignment from atomic coordinates"
HOMEPAGE="http://webclu.bio.wzw.tum.de/stride/"
SRC_URI="
- ftp://ftp.ebi.ac.uk/pub/software/unix/${PN}/src/${PN}.tar.gz
+ ftp://ftp.ebi.ac.uk/pub/software/unix/${PN}/src/${PN}.tar.gz -> ${P}.tar.gz
https://dev.gentoo.org/~jlec/distfiles/${PN}-20060723-update.patch.bz2"
SLOT="0"
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/stride/
@ 2021-01-06 15:09 Fabian Groffen
0 siblings, 0 replies; 6+ messages in thread
From: Fabian Groffen @ 2021-01-06 15:09 UTC (permalink / raw
To: gentoo-commits
commit: 37aab35356278a84cd7d9ce01885941d82632e1e
Author: Fabian Groffen <grobian <AT> gentoo <DOT> org>
AuthorDate: Wed Jan 6 15:09:10 2021 +0000
Commit: Fabian Groffen <grobian <AT> gentoo <DOT> org>
CommitDate: Wed Jan 6 15:09:10 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=37aab353
sci-biology/stride: drop x86-macos
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Fabian Groffen <grobian <AT> gentoo.org>
sci-biology/stride/stride-20011129-r1.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/stride/stride-20011129-r1.ebuild b/sci-biology/stride/stride-20011129-r1.ebuild
index 678887de925..bd815dbf341 100644
--- a/sci-biology/stride/stride-20011129-r1.ebuild
+++ b/sci-biology/stride/stride-20011129-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -13,7 +13,7 @@ SRC_URI="
LICENSE="STRIDE"
SLOT="0"
-KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~x86-macos"
+KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux"
RESTRICT="mirror bindist"
S="${WORKDIR}"
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/stride/
@ 2021-05-02 19:22 Pacho Ramos
0 siblings, 0 replies; 6+ messages in thread
From: Pacho Ramos @ 2021-05-02 19:22 UTC (permalink / raw
To: gentoo-commits
commit: 1bf48f94b258ecee373c32cc5c0c204ac2b584c6
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Sun May 2 19:17:21 2021 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Sun May 2 19:22:22 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1bf48f94
sci-biology/stride: Re-host distfiles
Thanks-to: Martin Mokrejš
Closes: https://bugs.gentoo.org/689774
Package-Manager: Portage-3.0.18, Repoman-3.0.3
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-biology/stride/stride-20011129-r1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/stride/stride-20011129-r1.ebuild b/sci-biology/stride/stride-20011129-r1.ebuild
index bd815dbf341..6211da2e92d 100644
--- a/sci-biology/stride/stride-20011129-r1.ebuild
+++ b/sci-biology/stride/stride-20011129-r1.ebuild
@@ -9,7 +9,7 @@ DESCRIPTION="Protein secondary structure assignment from atomic coordinates"
HOMEPAGE="http://webclu.bio.wzw.tum.de/stride/"
SRC_URI="
ftp://ftp.ebi.ac.uk/pub/software/unix/${PN}/src/${PN}.tar.gz -> ${P}.tar.gz
- https://dev.gentoo.org/~jlec/distfiles/${PN}-20060723-update.patch.bz2"
+ https://dev.gentoo.org/~pacho/${PN}/${PN}-20060723-update.patch.bz2"
LICENSE="STRIDE"
SLOT="0"
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/stride/
@ 2021-11-18 23:50 Georgy Yakovlev
0 siblings, 0 replies; 6+ messages in thread
From: Georgy Yakovlev @ 2021-11-18 23:50 UTC (permalink / raw
To: gentoo-commits
commit: 04838415ba0c901c060322db0b31c0ccb35441a9
Author: Georgy Yakovlev <gyakovlev <AT> gentoo <DOT> org>
AuthorDate: Thu Nov 18 23:44:54 2021 +0000
Commit: Georgy Yakovlev <gyakovlev <AT> gentoo <DOT> org>
CommitDate: Thu Nov 18 23:50:18 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=04838415
sci-biology/stride: de-stabilize for ~ppc, bug #823768
Bug: https://bugs.gentoo.org/823768
Signed-off-by: Georgy Yakovlev <gyakovlev <AT> gentoo.org>
sci-biology/stride/stride-20011129-r1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/stride/stride-20011129-r1.ebuild b/sci-biology/stride/stride-20011129-r1.ebuild
index 6211da2e92d7..a8681b7f924e 100644
--- a/sci-biology/stride/stride-20011129-r1.ebuild
+++ b/sci-biology/stride/stride-20011129-r1.ebuild
@@ -13,7 +13,7 @@ SRC_URI="
LICENSE="STRIDE"
SLOT="0"
-KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux"
RESTRICT="mirror bindist"
S="${WORKDIR}"
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/stride/
@ 2023-10-19 14:55 Pacho Ramos
0 siblings, 0 replies; 6+ messages in thread
From: Pacho Ramos @ 2023-10-19 14:55 UTC (permalink / raw
To: gentoo-commits
commit: adf08d70bad8ab6b9ad3cbae8429ae5cff35f78b
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Thu Oct 19 14:54:11 2023 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Thu Oct 19 14:54:18 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=adf08d70
sci-biology/stride: add 20060723
Update upstream sources location and rebase our patch
Closes: https://bugs.gentoo.org/912948
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-biology/stride/Manifest | 2 ++
sci-biology/stride/stride-20060723.ebuild | 35 +++++++++++++++++++++++++++++++
2 files changed, 37 insertions(+)
diff --git a/sci-biology/stride/Manifest b/sci-biology/stride/Manifest
index 8d9e9236f0cc..bfd0e48635ba 100644
--- a/sci-biology/stride/Manifest
+++ b/sci-biology/stride/Manifest
@@ -1,2 +1,4 @@
DIST stride-20011129.tar.gz 56441 BLAKE2B 4d4cd3f9f6cef997fff10571aecb70cb21056e88c5130e7dfdafe15a6fb353656d0635b4d65895ef115479a87dcf600b659455d15460344c838543a2e356bfae SHA512 cbd40fce4684728f363520540132fc1a0003126954a145d59aeff48adb20fdaa66520bd12b56ee5d2906e8ea97bf78a225204105b820f7f368aee5e790a6471b
+DIST stride-20030408.tar.gz 318997 BLAKE2B 0a6fbb7da0a18cc9fbc4beb3214488080e5f6b85b93f87a33f3d6c38385da12707ee0eb2a10a86c9f6dd3884bd043e3f7f36c6aac797da7dc4f351fab047a950 SHA512 50d71c053118ca078dd9a4659d9b0f62d1f1101519e01b258a088e229ad2062bec917160c7794f18c96d982992d5571f93508365ff4f6e76438da8183390b498
+DIST stride-20060723-update-r1.patch.xz 5888 BLAKE2B 6f477787004fd962b2faf5f0dd1a497067608eb8fcc5d16e161d918ecff7a6b86184eeb5f97ece4465d7595dd64fd0958a6bcedb76f2b666bdc4d0947e51eda0 SHA512 5ecaa5c262856009e188c00a9cf75765fcd7988ebe3cf0389101a4c281fdbc8d085a024fa78b6c88916528d1158133873ebf38a070a66b7e76f842586646ba2d
DIST stride-20060723-update.patch.bz2 5621 BLAKE2B 266a7371c0963a996430c1f809b46196e8bf179fcf2afb4380f6eccd092c03b29d5b09b8a8438ee7848d0f411920db2e4465ef646c75a406197412f35e880179 SHA512 e06eb68b907615e12dc1a9981be157400e9ffed9391a906cb4eb3ef4067b7027c26cc600298053bfc5d2bbbebbbfefe0e6b18d0e4f6fef2172768e6f95498af1
diff --git a/sci-biology/stride/stride-20060723.ebuild b/sci-biology/stride/stride-20060723.ebuild
new file mode 100644
index 000000000000..007a2688b0f7
--- /dev/null
+++ b/sci-biology/stride/stride-20060723.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit toolchain-funcs
+
+DESCRIPTION="Protein secondary structure assignment from atomic coordinates"
+HOMEPAGE="http://webclu.bio.wzw.tum.de/stride/"
+# Version 20030408 per dates in upstream tarball
+UPSTREAM_VER="20030408"
+SRC_URI="https://webclu.bio.wzw.tum.de/stride/${PN}.tar.gz -> ${PN}-${UPSTREAM_VER}.tar.gz
+ https://dev.gentoo.org/~pacho/${PN}/${PN}-20060723-update-r1.patch.xz"
+
+LICENSE="STRIDE"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+RESTRICT="mirror bindist"
+
+S="${WORKDIR}"
+PATCHES=(
+ # This patch updates the source to the most recent
+ # version which was kindly provided by the author
+ "${S}"/${P}-update-r1.patch
+
+ "${FILESDIR}"/${PN}-20011129-fix-buildsystem.patch
+ "${FILESDIR}"/${PN}-20011129-clang16.patch
+)
+
+src_configure() {
+ tc-export CC
+}
+
+src_install() {
+ dobin ${PN}
+}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-biology/stride/
@ 2023-10-19 14:55 Pacho Ramos
0 siblings, 0 replies; 6+ messages in thread
From: Pacho Ramos @ 2023-10-19 14:55 UTC (permalink / raw
To: gentoo-commits
commit: a46e112548edd3ce1f5edab2499e5db735c4653a
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Thu Oct 19 14:55:14 2023 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Thu Oct 19 14:55:16 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a46e1125
sci-biology/stride: stabilize 20060723 for amd64
As current stable cannot be installed and, at the end, it is the same code
from updated sources
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-biology/stride/stride-20060723.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/stride/stride-20060723.ebuild b/sci-biology/stride/stride-20060723.ebuild
index 007a2688b0f7..45c2f457468b 100644
--- a/sci-biology/stride/stride-20060723.ebuild
+++ b/sci-biology/stride/stride-20060723.ebuild
@@ -13,7 +13,7 @@ SRC_URI="https://webclu.bio.wzw.tum.de/stride/${PN}.tar.gz -> ${PN}-${UPSTREAM_V
LICENSE="STRIDE"
SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
RESTRICT="mirror bindist"
S="${WORKDIR}"
^ permalink raw reply related [flat|nested] 6+ messages in thread
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