* [gentoo-commits] proj/sci:master commit in: dev-python/hdbscan/
@ 2023-01-31 3:23 Horea Christian
0 siblings, 0 replies; 5+ messages in thread
From: Horea Christian @ 2023-01-31 3:23 UTC (permalink / raw
To: gentoo-commits
commit: 207a85724b6526e0f3be017a8a953412fcdcf597
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Jan 31 03:23:22 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jan 31 03:23:22 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=207a8572
dev-python/hdbscan: new package, add 0.8.26, 0.8.29
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/hdbscan/hdbscan-0.8.26.ebuild | 33 ++++++++++++++++++++++++++++++++
dev-python/hdbscan/hdbscan-0.8.29.ebuild | 33 ++++++++++++++++++++++++++++++++
dev-python/hdbscan/metadata.xml | 28 +++++++++++++++++++++++++++
3 files changed, 94 insertions(+)
diff --git a/dev-python/hdbscan/hdbscan-0.8.26.ebuild b/dev-python/hdbscan/hdbscan-0.8.26.ebuild
new file mode 100644
index 000000000..91e83eb87
--- /dev/null
+++ b/dev-python/hdbscan/hdbscan-0.8.26.ebuild
@@ -0,0 +1,33 @@
+# Copyright 2021-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..11} )
+DISTUTILS_USE_PEP517=setuptools
+inherit distutils-r1
+
+DESCRIPTION="A high performance implementation of HDBSCAN clustering."
+HOMEPAGE="https://github.com/scikit-learn-contrib/hdbscan"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+RESTRICT="test"
+# Tests fail, reported to upstream
+# https://github.com/scikit-learn-contrib/hdbscan/issues/501
+
+DEPEND=""
+RDEPEND="
+ dev-python/cython[${PYTHON_USEDEP}]
+ dev-python/joblib[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
+ dev-python/six[${PYTHON_USEDEP}]
+ sci-libs/scikit-learn[${PYTHON_USEDEP}]
+"
+BDEPEND=""
+
+distutils_enable_tests pytest
diff --git a/dev-python/hdbscan/hdbscan-0.8.29.ebuild b/dev-python/hdbscan/hdbscan-0.8.29.ebuild
new file mode 100644
index 000000000..85d049d4c
--- /dev/null
+++ b/dev-python/hdbscan/hdbscan-0.8.29.ebuild
@@ -0,0 +1,33 @@
+# Copyright 2021-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{8..10} )
+DISTUTILS_USE_PEP517=setuptools
+inherit distutils-r1
+
+DESCRIPTION="A high performance implementation of HDBSCAN clustering."
+HOMEPAGE="https://github.com/scikit-learn-contrib/hdbscan"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+# Reported upstream:
+# https://github.com/scikit-learn-contrib/hdbscan/issues/501
+RESTRICT="test"
+
+DEPEND=""
+RDEPEND="
+ dev-python/cython[${PYTHON_USEDEP}]
+ dev-python/joblib[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
+ dev-python/six[${PYTHON_USEDEP}]
+ sci-libs/scikit-learn[${PYTHON_USEDEP}]
+"
+BDEPEND=""
+
+distutils_enable_tests pytest
diff --git a/dev-python/hdbscan/metadata.xml b/dev-python/hdbscan/metadata.xml
new file mode 100644
index 000000000..b43e627e0
--- /dev/null
+++ b/dev-python/hdbscan/metadata.xml
@@ -0,0 +1,28 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="person">
+ <email>gentoo@chymera.eu</email>
+ <name>Horea Christian</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>sci@gentoo.org</email>
+ <name>Gentoo Science Project</name>
+ </maintainer>
+ <longdescription lang="en">
+ HDBSCAN - Hierarchical Density-Based Spatial Clustering of Applications with
+ Noise. Performs DBSCAN over varying epsilon values and integrates the result
+ to find a clustering that gives the best stability over epsilon. This allows
+ HDBSCAN to find clusters of varying densities (unlike DBSCAN), and be more
+ robust to parameter selection.
+
+ In practice this means that HDBSCAN returns a good clustering straight away
+ with little or no parameter tuning -- and the primary parameter, minimum
+ cluster size, is intuitive and easy to select. HDBSCAN is ideal for
+ exploratory data analysis; it's a fast and robust algorithm that you can
+ trust to return meaningful clusters (if there are any).
+ </longdescription>
+ <upstream>
+ <remote-id type="github">scikit-learn-contrib/hdbscan</remote-id>
+ </upstream>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/hdbscan/
@ 2023-01-31 9:52 Horea Christian
0 siblings, 0 replies; 5+ messages in thread
From: Horea Christian @ 2023-01-31 9:52 UTC (permalink / raw
To: gentoo-commits
commit: 3fa2245dba29ef460e60d00e43426359b28acbe7
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Jan 31 09:52:08 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jan 31 09:52:08 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3fa2245d
dev-python/hdbscan: enable py3.11 and disable py3.9
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/hdbscan/hdbscan-0.8.29.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-python/hdbscan/hdbscan-0.8.29.ebuild b/dev-python/hdbscan/hdbscan-0.8.29.ebuild
index 85d049d4c..e13b6da0e 100644
--- a/dev-python/hdbscan/hdbscan-0.8.29.ebuild
+++ b/dev-python/hdbscan/hdbscan-0.8.29.ebuild
@@ -3,7 +3,7 @@
EAPI=8
-PYTHON_COMPAT=( python3_{8..10} )
+PYTHON_COMPAT=( python3_{10..11} )
DISTUTILS_USE_PEP517=setuptools
inherit distutils-r1
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/hdbscan/
@ 2023-01-31 9:52 Horea Christian
0 siblings, 0 replies; 5+ messages in thread
From: Horea Christian @ 2023-01-31 9:52 UTC (permalink / raw
To: gentoo-commits
commit: 1068c61e051fbeb1a2ed2285ba0b497deaca9510
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Jan 31 09:50:51 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jan 31 09:50:51 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=1068c61e
dev-python/hdbscan: add pypi upstream metadata
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/hdbscan/metadata.xml | 1 +
1 file changed, 1 insertion(+)
diff --git a/dev-python/hdbscan/metadata.xml b/dev-python/hdbscan/metadata.xml
index b43e627e0..3e9aab1c5 100644
--- a/dev-python/hdbscan/metadata.xml
+++ b/dev-python/hdbscan/metadata.xml
@@ -24,5 +24,6 @@
</longdescription>
<upstream>
<remote-id type="github">scikit-learn-contrib/hdbscan</remote-id>
+ <remote-id type="pypi">hdbscan</remote-id>
</upstream>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/hdbscan/
@ 2023-05-22 13:12 Andrew Ammerlaan
0 siblings, 0 replies; 5+ messages in thread
From: Andrew Ammerlaan @ 2023-05-22 13:12 UTC (permalink / raw
To: gentoo-commits
commit: 73dbc1a6b95b43d14e377d892aafd4f512594741
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Mon May 22 13:10:56 2023 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Mon May 22 13:12:38 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=73dbc1a6
dev-python/hdbscan: drop 0.8.26
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
dev-python/hdbscan/hdbscan-0.8.26.ebuild | 33 --------------------------------
1 file changed, 33 deletions(-)
diff --git a/dev-python/hdbscan/hdbscan-0.8.26.ebuild b/dev-python/hdbscan/hdbscan-0.8.26.ebuild
deleted file mode 100644
index 91e83eb87..000000000
--- a/dev-python/hdbscan/hdbscan-0.8.26.ebuild
+++ /dev/null
@@ -1,33 +0,0 @@
-# Copyright 2021-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..11} )
-DISTUTILS_USE_PEP517=setuptools
-inherit distutils-r1
-
-DESCRIPTION="A high performance implementation of HDBSCAN clustering."
-HOMEPAGE="https://github.com/scikit-learn-contrib/hdbscan"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test"
-RESTRICT="test"
-# Tests fail, reported to upstream
-# https://github.com/scikit-learn-contrib/hdbscan/issues/501
-
-DEPEND=""
-RDEPEND="
- dev-python/cython[${PYTHON_USEDEP}]
- dev-python/joblib[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]
- dev-python/six[${PYTHON_USEDEP}]
- sci-libs/scikit-learn[${PYTHON_USEDEP}]
-"
-BDEPEND=""
-
-distutils_enable_tests pytest
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/hdbscan/
@ 2023-05-22 13:12 Andrew Ammerlaan
0 siblings, 0 replies; 5+ messages in thread
From: Andrew Ammerlaan @ 2023-05-22 13:12 UTC (permalink / raw
To: gentoo-commits
commit: 513259265b4c68a69c34536233033e52ad007fa6
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Mon May 22 13:10:47 2023 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Mon May 22 13:12:37 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=51325926
dev-python/hdbscan: update SRC_URI
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
dev-python/hdbscan/hdbscan-0.8.29.ebuild | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/dev-python/hdbscan/hdbscan-0.8.29.ebuild b/dev-python/hdbscan/hdbscan-0.8.29.ebuild
index e13b6da0e..33947fd22 100644
--- a/dev-python/hdbscan/hdbscan-0.8.29.ebuild
+++ b/dev-python/hdbscan/hdbscan-0.8.29.ebuild
@@ -5,11 +5,10 @@ EAPI=8
PYTHON_COMPAT=( python3_{10..11} )
DISTUTILS_USE_PEP517=setuptools
-inherit distutils-r1
+inherit distutils-r1 pypi
DESCRIPTION="A high performance implementation of HDBSCAN clustering."
HOMEPAGE="https://github.com/scikit-learn-contrib/hdbscan"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
LICENSE="BSD"
SLOT="0"
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