[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/mdtraj/files/, sci-chemistry/mdtraj/

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/mdtraj/files/, sci-chemistry/mdtraj/

[Pacho Ramos]

commit:     a51915fb410cf715cd1610b3539830321e6867d2
Author:     Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Fri May  5 14:25:18 2023 +0000
Commit:     Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Fri May  5 14:25:42 2023 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a51915fb

sci-chemistry/mdtraj: enable py3.11

Closes: https://bugs.gentoo.org/897198
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>

 sci-chemistry/mdtraj/files/mdtraj-1.9.7-python311.patch | 16 ++++++++++++++++
 sci-chemistry/mdtraj/mdtraj-1.9.7.ebuild                |  6 +++++-
 2 files changed, 21 insertions(+), 1 deletion(-)

diff --git a/sci-chemistry/mdtraj/files/mdtraj-1.9.7-python311.patch b/sci-chemistry/mdtraj/files/mdtraj-1.9.7-python311.patch
new file mode 100644
index 000000000000..303c819aaee4
--- /dev/null
+++ b/sci-chemistry/mdtraj/files/mdtraj-1.9.7-python311.patch
@@ -0,0 +1,16 @@
+Index: mdtraj/setup.py
+===================================================================
+--- mdtraj.orig/setup.py	2023-01-18 15:26:51.424826255 +0100
++++ mdtraj/setup.py	2023-01-18 15:26:51.420826223 +0100
+@@ -298,6 +298,10 @@
+ 
+         for e in extensions:
+             e.include_dirs.append(np.get_include())
+-        metadata['ext_modules'] = cythonize(extensions, language_level=sys.version_info[0])
++        metadata['ext_modules'] = cythonize(
++            extensions,
++            language_level=sys.version_info[0],
++            force=True,
++        )
+ 
+     setup(**metadata)

diff --git a/sci-chemistry/mdtraj/mdtraj-1.9.7.ebuild b/sci-chemistry/mdtraj/mdtraj-1.9.7.ebuild
index 997dacaa72dd..f1d744000147 100644
--- a/sci-chemistry/mdtraj/mdtraj-1.9.7.ebuild
+++ b/sci-chemistry/mdtraj/mdtraj-1.9.7.ebuild
@@ -2,7 +2,7 @@
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
-PYTHON_COMPAT=( python3_{9..10} )
+PYTHON_COMPAT=( python3_{9..11} )
 
 inherit distutils-r1 pypi
 
@@ -34,6 +34,10 @@ DEPEND="${RDEPEND}
 
 distutils_enable_tests --install pytest
 
+PATCHES=(
+	"${FILESDIR}/${P}-python311.patch"
+)
+
 python_prepare_all() {
 	sed -e "s:re.match('build.*(mdtraj.*)', output_dir).group(1):'.':g" \
 		-i basesetup.py || die