* [gentoo-commits] proj/sci:master commit in: dev-python/neo/
@ 2023-01-31 9:53 Horea Christian
0 siblings, 0 replies; 6+ messages in thread
From: Horea Christian @ 2023-01-31 9:53 UTC (permalink / raw
To: gentoo-commits
commit: a020e3fc5daa38926c05fedc5d4de784f26cc172
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Jan 31 09:53:02 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jan 31 09:53:02 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a020e3fc
dev-python/neo: new package, add 0.11.0, 0.11.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/neo/metadata.xml | 23 +++++++++++++++
dev-python/neo/neo-0.11.0.ebuild | 62 ++++++++++++++++++++++++++++++++++++++++
dev-python/neo/neo-0.11.1.ebuild | 55 +++++++++++++++++++++++++++++++++++
3 files changed, 140 insertions(+)
diff --git a/dev-python/neo/metadata.xml b/dev-python/neo/metadata.xml
new file mode 100644
index 000000000..5a50da2a7
--- /dev/null
+++ b/dev-python/neo/metadata.xml
@@ -0,0 +1,23 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="person">
+ <email>gentoo@chymera.eu</email>
+ <name>Horea Christian</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>sci@gentoo.org</email>
+ <name>Gentoo Science Project</name>
+ </maintainer>
+ <longdescription lang="en">
+ Neo is a Python package for working with electrophysiology data in Python,
+ together with support for reading a wide range of neurophysiology file
+ formats, including Spike2, NeuroExplorer, AlphaOmega, Axon, Blackrock,
+ Plexon, Tdt, and support for writing to a subset of these formats plus
+ non-proprietary formats including HDF5.
+ </longdescription>
+ <upstream>
+ <remote-id type="github">NeuralEnsemble/python-neo</remote-id>
+ <remote-id type="pypi">neo</remote-id>
+ </upstream>
+</pkgmetadata>
diff --git a/dev-python/neo/neo-0.11.0.ebuild b/dev-python/neo/neo-0.11.0.ebuild
new file mode 100644
index 000000000..c66b2b951
--- /dev/null
+++ b/dev-python/neo/neo-0.11.0.ebuild
@@ -0,0 +1,62 @@
+# Copyright 2021-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..10} )
+DISTUTILS_USE_PEP517=setuptools
+inherit distutils-r1
+
+MY_PN="python-neo"
+
+DESCRIPTION="Read and represent a wide range of neurophysiology file formats in Python"
+HOMEPAGE="https://github.com/NeuralEnsemble/python-neo"
+SRC_URI="https://github.com/NeuralEnsemble/python-neo/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="test"
+
+RDEPEND="
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/quantities[${PYTHON_USEDEP}]
+"
+BDEPEND="
+ test? (
+ ${RDEPEND}
+ dev-python/scipy[${PYTHON_USEDEP}]
+ dev-python/h5py[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ dev-python/pillow[${PYTHON_USEDEP}]
+ dev-python/probeinterface[${PYTHON_USEDEP}]
+ dev-python/pynwb[${PYTHON_USEDEP}]
+ dev-python/tqdm[${PYTHON_USEDEP}]
+ dev-vcs/datalad[${PYTHON_USEDEP}]
+ )
+"
+# Testing deps also need:
+# igor
+# pyedflib https://github.com/holgern/pyedflib
+# klusta
+# nixio
+# sonpy
+# ipython
+
+S="${WORKDIR}/${MY_PN}-${PV}"
+
+distutils_enable_tests pytest
+
+EPYTEST_DESELECT=(
+ neo/test/utils/test_datasets.py::TestDownloadDataset::test_download_dataset
+)
+
+# Reported upstream
+# https://github.com/NeuralEnsemble/python-neo/issues/1037
+python_test() {
+ local EPYTEST_IGNORE=(
+ neo/test/iotest/*
+ neo/test/rawiotest/*
+ )
+ epytest
+}
diff --git a/dev-python/neo/neo-0.11.1.ebuild b/dev-python/neo/neo-0.11.1.ebuild
new file mode 100644
index 000000000..c7a36d0e3
--- /dev/null
+++ b/dev-python/neo/neo-0.11.1.ebuild
@@ -0,0 +1,55 @@
+# Copyright 2021-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..10} )
+DISTUTILS_USE_PEP517=setuptools
+inherit distutils-r1
+
+DESCRIPTION="Read and represent a wide range of neurophysiology file formats in Python"
+HOMEPAGE="https://github.com/NeuralEnsemble/python-neo"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+#SRC_URI="https://github.com/NeuralEnsemble/python-neo/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="test"
+
+RDEPEND="
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/quantities[${PYTHON_USEDEP}]
+"
+BDEPEND="
+ test? (
+ ${RDEPEND}
+ dev-python/scipy[${PYTHON_USEDEP}]
+ dev-python/h5py[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ dev-python/pillow[${PYTHON_USEDEP}]
+ dev-python/probeinterface[${PYTHON_USEDEP}]
+ dev-python/pynwb[${PYTHON_USEDEP}]
+ dev-python/tqdm[${PYTHON_USEDEP}]
+ dev-vcs/datalad[${PYTHON_USEDEP}]
+ )
+"
+# Testing deps also need:
+# igor
+# pyedflib https://github.com/holgern/pyedflib
+# klusta
+# nixio
+# sonpy
+# ipython
+
+distutils_enable_tests pytest
+
+# Reported upstream
+# https://github.com/NeuralEnsemble/python-neo/issues/1037
+python_test() {
+ local EPYTEST_IGNORE=(
+ neo/test/iotest/*
+ neo/test/rawiotest/*
+ )
+ epytest
+}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/neo/
@ 2023-05-02 12:38 Andrew Ammerlaan
0 siblings, 0 replies; 6+ messages in thread
From: Andrew Ammerlaan @ 2023-05-02 12:38 UTC (permalink / raw
To: gentoo-commits
commit: bc1b39b9d1c02d4006dd5f82bbd466913ac51c58
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue May 2 12:38:36 2023 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue May 2 12:38:36 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=bc1b39b9
dev-python/neo: treeclean
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
dev-python/neo/metadata.xml | 23 ---------------
dev-python/neo/neo-0.11.0.ebuild | 62 ----------------------------------------
dev-python/neo/neo-0.11.1.ebuild | 55 -----------------------------------
3 files changed, 140 deletions(-)
diff --git a/dev-python/neo/metadata.xml b/dev-python/neo/metadata.xml
deleted file mode 100644
index 5a50da2a7..000000000
--- a/dev-python/neo/metadata.xml
+++ /dev/null
@@ -1,23 +0,0 @@
-<?xml version='1.0' encoding='UTF-8'?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>gentoo@chymera.eu</email>
- <name>Horea Christian</name>
- </maintainer>
- <maintainer type="project">
- <email>sci@gentoo.org</email>
- <name>Gentoo Science Project</name>
- </maintainer>
- <longdescription lang="en">
- Neo is a Python package for working with electrophysiology data in Python,
- together with support for reading a wide range of neurophysiology file
- formats, including Spike2, NeuroExplorer, AlphaOmega, Axon, Blackrock,
- Plexon, Tdt, and support for writing to a subset of these formats plus
- non-proprietary formats including HDF5.
- </longdescription>
- <upstream>
- <remote-id type="github">NeuralEnsemble/python-neo</remote-id>
- <remote-id type="pypi">neo</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/dev-python/neo/neo-0.11.0.ebuild b/dev-python/neo/neo-0.11.0.ebuild
deleted file mode 100644
index c66b2b951..000000000
--- a/dev-python/neo/neo-0.11.0.ebuild
+++ /dev/null
@@ -1,62 +0,0 @@
-# Copyright 2021-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..10} )
-DISTUTILS_USE_PEP517=setuptools
-inherit distutils-r1
-
-MY_PN="python-neo"
-
-DESCRIPTION="Read and represent a wide range of neurophysiology file formats in Python"
-HOMEPAGE="https://github.com/NeuralEnsemble/python-neo"
-SRC_URI="https://github.com/NeuralEnsemble/python-neo/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="test"
-
-RDEPEND="
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/quantities[${PYTHON_USEDEP}]
-"
-BDEPEND="
- test? (
- ${RDEPEND}
- dev-python/scipy[${PYTHON_USEDEP}]
- dev-python/h5py[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- dev-python/pillow[${PYTHON_USEDEP}]
- dev-python/probeinterface[${PYTHON_USEDEP}]
- dev-python/pynwb[${PYTHON_USEDEP}]
- dev-python/tqdm[${PYTHON_USEDEP}]
- dev-vcs/datalad[${PYTHON_USEDEP}]
- )
-"
-# Testing deps also need:
-# igor
-# pyedflib https://github.com/holgern/pyedflib
-# klusta
-# nixio
-# sonpy
-# ipython
-
-S="${WORKDIR}/${MY_PN}-${PV}"
-
-distutils_enable_tests pytest
-
-EPYTEST_DESELECT=(
- neo/test/utils/test_datasets.py::TestDownloadDataset::test_download_dataset
-)
-
-# Reported upstream
-# https://github.com/NeuralEnsemble/python-neo/issues/1037
-python_test() {
- local EPYTEST_IGNORE=(
- neo/test/iotest/*
- neo/test/rawiotest/*
- )
- epytest
-}
diff --git a/dev-python/neo/neo-0.11.1.ebuild b/dev-python/neo/neo-0.11.1.ebuild
deleted file mode 100644
index c7a36d0e3..000000000
--- a/dev-python/neo/neo-0.11.1.ebuild
+++ /dev/null
@@ -1,55 +0,0 @@
-# Copyright 2021-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..10} )
-DISTUTILS_USE_PEP517=setuptools
-inherit distutils-r1
-
-DESCRIPTION="Read and represent a wide range of neurophysiology file formats in Python"
-HOMEPAGE="https://github.com/NeuralEnsemble/python-neo"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-#SRC_URI="https://github.com/NeuralEnsemble/python-neo/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="test"
-
-RDEPEND="
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/quantities[${PYTHON_USEDEP}]
-"
-BDEPEND="
- test? (
- ${RDEPEND}
- dev-python/scipy[${PYTHON_USEDEP}]
- dev-python/h5py[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- dev-python/pillow[${PYTHON_USEDEP}]
- dev-python/probeinterface[${PYTHON_USEDEP}]
- dev-python/pynwb[${PYTHON_USEDEP}]
- dev-python/tqdm[${PYTHON_USEDEP}]
- dev-vcs/datalad[${PYTHON_USEDEP}]
- )
-"
-# Testing deps also need:
-# igor
-# pyedflib https://github.com/holgern/pyedflib
-# klusta
-# nixio
-# sonpy
-# ipython
-
-distutils_enable_tests pytest
-
-# Reported upstream
-# https://github.com/NeuralEnsemble/python-neo/issues/1037
-python_test() {
- local EPYTEST_IGNORE=(
- neo/test/iotest/*
- neo/test/rawiotest/*
- )
- epytest
-}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/neo/
@ 2023-05-02 21:52 Horea Christian
0 siblings, 0 replies; 6+ messages in thread
From: Horea Christian @ 2023-05-02 21:52 UTC (permalink / raw
To: gentoo-commits
commit: 053104aaf88b9c2dd64c850242b9249968881b0e
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue May 2 19:28:52 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue May 2 19:29:22 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=053104aa
dev-python/neo: brought back
This reverts commit bc1b39b9d1c02d4006dd5f82bbd466913ac51c58.
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/neo/metadata.xml | 23 +++++++++++++++
dev-python/neo/neo-0.11.0.ebuild | 62 ++++++++++++++++++++++++++++++++++++++++
dev-python/neo/neo-0.11.1.ebuild | 55 +++++++++++++++++++++++++++++++++++
3 files changed, 140 insertions(+)
diff --git a/dev-python/neo/metadata.xml b/dev-python/neo/metadata.xml
new file mode 100644
index 000000000..5a50da2a7
--- /dev/null
+++ b/dev-python/neo/metadata.xml
@@ -0,0 +1,23 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="person">
+ <email>gentoo@chymera.eu</email>
+ <name>Horea Christian</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>sci@gentoo.org</email>
+ <name>Gentoo Science Project</name>
+ </maintainer>
+ <longdescription lang="en">
+ Neo is a Python package for working with electrophysiology data in Python,
+ together with support for reading a wide range of neurophysiology file
+ formats, including Spike2, NeuroExplorer, AlphaOmega, Axon, Blackrock,
+ Plexon, Tdt, and support for writing to a subset of these formats plus
+ non-proprietary formats including HDF5.
+ </longdescription>
+ <upstream>
+ <remote-id type="github">NeuralEnsemble/python-neo</remote-id>
+ <remote-id type="pypi">neo</remote-id>
+ </upstream>
+</pkgmetadata>
diff --git a/dev-python/neo/neo-0.11.0.ebuild b/dev-python/neo/neo-0.11.0.ebuild
new file mode 100644
index 000000000..c66b2b951
--- /dev/null
+++ b/dev-python/neo/neo-0.11.0.ebuild
@@ -0,0 +1,62 @@
+# Copyright 2021-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..10} )
+DISTUTILS_USE_PEP517=setuptools
+inherit distutils-r1
+
+MY_PN="python-neo"
+
+DESCRIPTION="Read and represent a wide range of neurophysiology file formats in Python"
+HOMEPAGE="https://github.com/NeuralEnsemble/python-neo"
+SRC_URI="https://github.com/NeuralEnsemble/python-neo/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="test"
+
+RDEPEND="
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/quantities[${PYTHON_USEDEP}]
+"
+BDEPEND="
+ test? (
+ ${RDEPEND}
+ dev-python/scipy[${PYTHON_USEDEP}]
+ dev-python/h5py[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ dev-python/pillow[${PYTHON_USEDEP}]
+ dev-python/probeinterface[${PYTHON_USEDEP}]
+ dev-python/pynwb[${PYTHON_USEDEP}]
+ dev-python/tqdm[${PYTHON_USEDEP}]
+ dev-vcs/datalad[${PYTHON_USEDEP}]
+ )
+"
+# Testing deps also need:
+# igor
+# pyedflib https://github.com/holgern/pyedflib
+# klusta
+# nixio
+# sonpy
+# ipython
+
+S="${WORKDIR}/${MY_PN}-${PV}"
+
+distutils_enable_tests pytest
+
+EPYTEST_DESELECT=(
+ neo/test/utils/test_datasets.py::TestDownloadDataset::test_download_dataset
+)
+
+# Reported upstream
+# https://github.com/NeuralEnsemble/python-neo/issues/1037
+python_test() {
+ local EPYTEST_IGNORE=(
+ neo/test/iotest/*
+ neo/test/rawiotest/*
+ )
+ epytest
+}
diff --git a/dev-python/neo/neo-0.11.1.ebuild b/dev-python/neo/neo-0.11.1.ebuild
new file mode 100644
index 000000000..c7a36d0e3
--- /dev/null
+++ b/dev-python/neo/neo-0.11.1.ebuild
@@ -0,0 +1,55 @@
+# Copyright 2021-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..10} )
+DISTUTILS_USE_PEP517=setuptools
+inherit distutils-r1
+
+DESCRIPTION="Read and represent a wide range of neurophysiology file formats in Python"
+HOMEPAGE="https://github.com/NeuralEnsemble/python-neo"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+#SRC_URI="https://github.com/NeuralEnsemble/python-neo/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="test"
+
+RDEPEND="
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/quantities[${PYTHON_USEDEP}]
+"
+BDEPEND="
+ test? (
+ ${RDEPEND}
+ dev-python/scipy[${PYTHON_USEDEP}]
+ dev-python/h5py[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ dev-python/pillow[${PYTHON_USEDEP}]
+ dev-python/probeinterface[${PYTHON_USEDEP}]
+ dev-python/pynwb[${PYTHON_USEDEP}]
+ dev-python/tqdm[${PYTHON_USEDEP}]
+ dev-vcs/datalad[${PYTHON_USEDEP}]
+ )
+"
+# Testing deps also need:
+# igor
+# pyedflib https://github.com/holgern/pyedflib
+# klusta
+# nixio
+# sonpy
+# ipython
+
+distutils_enable_tests pytest
+
+# Reported upstream
+# https://github.com/NeuralEnsemble/python-neo/issues/1037
+python_test() {
+ local EPYTEST_IGNORE=(
+ neo/test/iotest/*
+ neo/test/rawiotest/*
+ )
+ epytest
+}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/neo/
@ 2023-05-02 21:53 Horea Christian
0 siblings, 0 replies; 6+ messages in thread
From: Horea Christian @ 2023-05-02 21:53 UTC (permalink / raw
To: gentoo-commits
commit: 9a8c18c25a6f8deda4090eecf214471d9d721e73
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue May 2 21:53:13 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue May 2 21:53:13 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9a8c18c2
dev-python/neo: update SRC_URI
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/neo/neo-0.11.0.ebuild | 5 ++---
dev-python/neo/neo-0.11.1.ebuild | 4 +---
2 files changed, 3 insertions(+), 6 deletions(-)
diff --git a/dev-python/neo/neo-0.11.0.ebuild b/dev-python/neo/neo-0.11.0.ebuild
index c66b2b951..dedbcea6e 100644
--- a/dev-python/neo/neo-0.11.0.ebuild
+++ b/dev-python/neo/neo-0.11.0.ebuild
@@ -3,15 +3,14 @@
EAPI=8
-PYTHON_COMPAT=( python3_{10..10} )
+PYTHON_COMPAT=( python3_{10..11} )
DISTUTILS_USE_PEP517=setuptools
-inherit distutils-r1
+inherit distutils-r1 pypi
MY_PN="python-neo"
DESCRIPTION="Read and represent a wide range of neurophysiology file formats in Python"
HOMEPAGE="https://github.com/NeuralEnsemble/python-neo"
-SRC_URI="https://github.com/NeuralEnsemble/python-neo/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="MIT"
SLOT="0"
diff --git a/dev-python/neo/neo-0.11.1.ebuild b/dev-python/neo/neo-0.11.1.ebuild
index c7a36d0e3..14e4e98c9 100644
--- a/dev-python/neo/neo-0.11.1.ebuild
+++ b/dev-python/neo/neo-0.11.1.ebuild
@@ -5,12 +5,10 @@ EAPI=8
PYTHON_COMPAT=( python3_{10..10} )
DISTUTILS_USE_PEP517=setuptools
-inherit distutils-r1
+inherit distutils-r1 pypi
DESCRIPTION="Read and represent a wide range of neurophysiology file formats in Python"
HOMEPAGE="https://github.com/NeuralEnsemble/python-neo"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-#SRC_URI="https://github.com/NeuralEnsemble/python-neo/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="MIT"
SLOT="0"
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/neo/
@ 2023-05-02 22:13 Horea Christian
0 siblings, 0 replies; 6+ messages in thread
From: Horea Christian @ 2023-05-02 22:13 UTC (permalink / raw
To: gentoo-commits
commit: 96ed26e34d59c0a0e87538be7ef875b6a07807fa
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue May 2 22:13:45 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue May 2 22:13:45 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=96ed26e3
dev-python/neo: enable py3.11
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/neo/neo-0.11.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-python/neo/neo-0.11.1.ebuild b/dev-python/neo/neo-0.11.1.ebuild
index 14e4e98c9..6f43494f8 100644
--- a/dev-python/neo/neo-0.11.1.ebuild
+++ b/dev-python/neo/neo-0.11.1.ebuild
@@ -3,7 +3,7 @@
EAPI=8
-PYTHON_COMPAT=( python3_{10..10} )
+PYTHON_COMPAT=( python3_{10..11} )
DISTUTILS_USE_PEP517=setuptools
inherit distutils-r1 pypi
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/neo/
@ 2023-12-14 19:17 Horea Christian
0 siblings, 0 replies; 6+ messages in thread
From: Horea Christian @ 2023-12-14 19:17 UTC (permalink / raw
To: gentoo-commits
commit: 04e727a714b5464b5e4a63a605bea5b6d6b42997
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Dec 14 19:17:41 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Dec 14 19:17:41 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=04e727a7
dev-python/neo: add 0.12.0
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/neo/neo-0.12.0.ebuild | 57 ++++++++++++++++++++++++++++++++++++++++
1 file changed, 57 insertions(+)
diff --git a/dev-python/neo/neo-0.12.0.ebuild b/dev-python/neo/neo-0.12.0.ebuild
new file mode 100644
index 000000000..6e058728e
--- /dev/null
+++ b/dev-python/neo/neo-0.12.0.ebuild
@@ -0,0 +1,57 @@
+# Copyright 2021-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..11} )
+DISTUTILS_USE_PEP517=setuptools
+inherit distutils-r1 pypi
+
+DESCRIPTION="Read and represent a wide range of neurophysiology file formats in Python"
+HOMEPAGE="https://github.com/NeuralEnsemble/python-neo"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="test"
+
+RDEPEND="
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/quantities[${PYTHON_USEDEP}]
+"
+BDEPEND="
+ test? (
+ ${RDEPEND}
+ dev-python/scipy[${PYTHON_USEDEP}]
+ dev-python/h5py[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ dev-python/pillow[${PYTHON_USEDEP}]
+ dev-python/probeinterface[${PYTHON_USEDEP}]
+ dev-python/pynwb[${PYTHON_USEDEP}]
+ dev-python/tqdm[${PYTHON_USEDEP}]
+ dev-vcs/datalad[${PYTHON_USEDEP}]
+ )
+"
+# Testing deps also need:
+# igor
+# pyedflib https://github.com/holgern/pyedflib
+# klusta
+# nixio
+# sonpy
+# ipython
+
+distutils_enable_tests pytest
+
+python_test() {
+ # Reported upstream
+ # https://github.com/NeuralEnsemble/python-neo/issues/1037
+ local EPYTEST_IGNORE=(
+ neo/test/iotest/*
+ neo/test/rawiotest/*
+ )
+ # Requires dynamic data download
+ local EPYTEST_DESELECT=(
+ neo/test/utils/test_datasets.py::TestDownloadDataset::test_download_dataset
+ )
+ epytest
+}
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