From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (2048 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 8804215ACFC for ; Tue, 2 May 2023 12:27:32 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id CBC67E08B0; Tue, 2 May 2023 12:27:31 +0000 (UTC) Received: from smtp.gentoo.org (dev.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id B6238E08AE for ; Tue, 2 May 2023 12:27:31 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 0B0C7340FF9 for ; Tue, 2 May 2023 12:27:31 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 98092A5D for ; Tue, 2 May 2023 12:27:29 +0000 (UTC) From: "Andrew Ammerlaan" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Andrew Ammerlaan" Message-ID: <1683030437.30a7dd01d0de685f5785c33971269754801eb3b8.andrewammerlaan@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/prokka/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/prokka/metadata.xml sci-biology/prokka/prokka-1.14.6.ebuild X-VCS-Directories: sci-biology/prokka/ X-VCS-Committer: andrewammerlaan X-VCS-Committer-Name: Andrew Ammerlaan X-VCS-Revision: 30a7dd01d0de685f5785c33971269754801eb3b8 X-VCS-Branch: master Date: Tue, 2 May 2023 12:27:29 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: f71ce9f5-0eeb-4d1a-882b-8277cd9f1088 X-Archives-Hash: 1e038fc438106728fe8d008db5bb2a7e commit: 30a7dd01d0de685f5785c33971269754801eb3b8 Author: Andrew Ammerlaan gentoo org> AuthorDate: Tue May 2 12:27:17 2023 +0000 Commit: Andrew Ammerlaan gentoo org> CommitDate: Tue May 2 12:27:17 2023 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=30a7dd01 sci-biology/prokka: treeclean Signed-off-by: Andrew Ammerlaan gentoo.org> sci-biology/prokka/metadata.xml | 15 -------------- sci-biology/prokka/prokka-1.14.6.ebuild | 36 --------------------------------- 2 files changed, 51 deletions(-) diff --git a/sci-biology/prokka/metadata.xml b/sci-biology/prokka/metadata.xml deleted file mode 100644 index 9272f0d9c..000000000 --- a/sci-biology/prokka/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ - - - - - mmokrejs@fold.natur.cuni.cz - Martin Mokrejs - - - sci-biology@gentoo.org - Gentoo Biology Project - - - tseemann/prokka - - diff --git a/sci-biology/prokka/prokka-1.14.6.ebuild b/sci-biology/prokka/prokka-1.14.6.ebuild deleted file mode 100644 index b56fd143f..000000000 --- a/sci-biology/prokka/prokka-1.14.6.ebuild +++ /dev/null @@ -1,36 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -DESCRIPTION="Prokaryotic whole genome annotation pipeline" -HOMEPAGE="https://vicbioinformatics.com/software.prokka.shtml" -SRC_URI="https://github.com/tseemann/prokka/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64" - -RDEPEND=" - sys-process/parallel - sci-biology/bioperl - sci-biology/prodigal - || ( sci-biology/ncbi-tools++ sci-biology/ncbi-blast+ ) - sci-biology/hmmer:* - sci-biology/infernal - sci-biology/exonerate - sci-biology/barrnap" -DEPEND="${RDEPEND}" -# sci-biology/minced -# >=sci-biolohy/hmmer-3.1 -# Aragorn -# >=RNAmmer-1.2 -# >=HMMmmer-2.0 (that is not sci-biology/hmmer) -# SignalP >= 3.0 -# sequin -# tbl2asn >= 23.0 from wget --mirror -nH -nd ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/linux64.tbl2asn.gz - -src_install() { - default - dobin bin/prokka -}