[gentoo-commits] proj/sci:master commit in: sci-biology/prokka/

["Andrew Ammerlaan" <andrewammerlaan@gentoo.org>]

commit:     30a7dd01d0de685f5785c33971269754801eb3b8
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue May  2 12:27:17 2023 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue May  2 12:27:17 2023 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=30a7dd01

sci-biology/prokka: treeclean

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 sci-biology/prokka/metadata.xml         | 15 --------------
 sci-biology/prokka/prokka-1.14.6.ebuild | 36 ---------------------------------
 2 files changed, 51 deletions(-)

diff --git a/sci-biology/prokka/metadata.xml b/sci-biology/prokka/metadata.xml
deleted file mode 100644
index 9272f0d9c..000000000
--- a/sci-biology/prokka/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-	<upstream>
-		<remote-id type="github">tseemann/prokka</remote-id>
-	</upstream>
-</pkgmetadata>

diff --git a/sci-biology/prokka/prokka-1.14.6.ebuild b/sci-biology/prokka/prokka-1.14.6.ebuild
deleted file mode 100644
index b56fd143f..000000000
--- a/sci-biology/prokka/prokka-1.14.6.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-DESCRIPTION="Prokaryotic whole genome annotation pipeline"
-HOMEPAGE="https://vicbioinformatics.com/software.prokka.shtml"
-SRC_URI="https://github.com/tseemann/prokka/archive/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64"
-
-RDEPEND="
-	sys-process/parallel
-	sci-biology/bioperl
-	sci-biology/prodigal
-	|| ( sci-biology/ncbi-tools++ sci-biology/ncbi-blast+ )
-	sci-biology/hmmer:*
-	sci-biology/infernal
-	sci-biology/exonerate
-	sci-biology/barrnap"
-DEPEND="${RDEPEND}"
-# sci-biology/minced
-# >=sci-biolohy/hmmer-3.1
-# Aragorn
-# >=RNAmmer-1.2
-# >=HMMmmer-2.0 (that is not sci-biology/hmmer)
-# SignalP >= 3.0
-# sequin
-# tbl2asn >= 23.0 from wget --mirror -nH -nd ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/linux64.tbl2asn.gz
-
-src_install() {
-	default
-	dobin bin/prokka
-}