From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (2048 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 24F9F15ACFC for ; Tue, 2 May 2023 12:26:00 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 0203AE08A5; Tue, 2 May 2023 12:25:59 +0000 (UTC) Received: from smtp.gentoo.org (dev.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id E38ADE08A5 for ; Tue, 2 May 2023 12:25:58 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 7FEA9340441 for ; Tue, 2 May 2023 12:25:57 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id EE8B7A64 for ; Tue, 2 May 2023 12:25:54 +0000 (UTC) From: "Andrew Ammerlaan" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Andrew Ammerlaan" Message-ID: <1683030302.2063f30830d744d566cddc2c454ec70e5600dae7.andrewammerlaan@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/gffutils/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/gffutils/gffutils-0.10.1.ebuild X-VCS-Directories: sci-biology/gffutils/ X-VCS-Committer: andrewammerlaan X-VCS-Committer-Name: Andrew Ammerlaan X-VCS-Revision: 2063f30830d744d566cddc2c454ec70e5600dae7 X-VCS-Branch: master Date: Tue, 2 May 2023 12:25:54 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 9a5a716b-da30-4a50-8f28-c4fd87dea205 X-Archives-Hash: ee879b8d42689fc5ef0fbcf19075d116 commit: 2063f30830d744d566cddc2c454ec70e5600dae7 Author: Andrew Ammerlaan gentoo org> AuthorDate: Tue May 2 12:25:02 2023 +0000 Commit: Andrew Ammerlaan gentoo org> CommitDate: Tue May 2 12:25:02 2023 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=2063f308 sci-biology/gffutils: drop 0.10.1 Signed-off-by: Andrew Ammerlaan gentoo.org> sci-biology/gffutils/gffutils-0.10.1.ebuild | 42 ----------------------------- 1 file changed, 42 deletions(-) diff --git a/sci-biology/gffutils/gffutils-0.10.1.ebuild b/sci-biology/gffutils/gffutils-0.10.1.ebuild deleted file mode 100644 index 96bceed2f..000000000 --- a/sci-biology/gffutils/gffutils-0.10.1.ebuild +++ /dev/null @@ -1,42 +0,0 @@ -# Copyright 1999-2023 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{10..11} ) - -inherit distutils-r1 - -DESCRIPTION="GFF and GTF file manipulation and interconversion" -HOMEPAGE="https://gffutils.readthedocs.io/en/latest/" -SRC_URI="https://github.com/daler/gffutils/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="test" -# Nose tests no longer supported -RESTRICT="test" - -RDEPEND=" - dev-python/simplejson[${PYTHON_USEDEP}] - dev-python/argh[${PYTHON_USEDEP}] - dev-python/argcomplete[${PYTHON_USEDEP}] - sci-biology/biopython[${PYTHON_USEDEP}] - sci-biology/pybedtools[${PYTHON_USEDEP}] - sci-biology/pyfaidx[${PYTHON_USEDEP}] -" -DEPEND="${RDEPEND}" - -python_prepare_all() { - if use test; then - sed -i -e "s:/tmp/gffutils-test:${T}:g" gffutils/test/test.py || die - fi - distutils-r1_python_prepare_all -} - -distutils_enable_tests nose -python_test() { - distutils_install_for_testing - nosetests -v -x --with-doctest -a '!slow' || die -}