* [gentoo-commits] proj/sci:master commit in: sci-biology/screed/
@ 2014-03-18 19:28 Justin Lecher
0 siblings, 0 replies; 7+ messages in thread
From: Justin Lecher @ 2014-03-18 19:28 UTC (permalink / raw
To: gentoo-commits
commit: f3663b43630a4c24cf97d954cd3fe30b3fe6282f
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Mar 18 19:26:16 2014 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Mar 18 19:26:16 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f3663b43
sci-biology/screed: New addition written by me
Package-Manager: portage-2.2.8-r1
---
sci-biology/screed/ChangeLog | 10 ++++++++++
sci-biology/screed/metadata.xml | 5 +++++
sci-biology/screed/screed-0.7.1.ebuild | 19 +++++++++++++++++++
3 files changed, 34 insertions(+)
diff --git a/sci-biology/screed/ChangeLog b/sci-biology/screed/ChangeLog
new file mode 100644
index 0000000..277d423
--- /dev/null
+++ b/sci-biology/screed/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/screed
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*screed-0.7.1 (18 Mar 2014)
+
+ 18 Mar 2014; Justin Lecher <jlec@gentoo.org> +screed-0.7.1.ebuild,
+ +metadata.xml:
+ New addition written by me
+
diff --git a/sci-biology/screed/metadata.xml b/sci-biology/screed/metadata.xml
new file mode 100644
index 0000000..f17a827
--- /dev/null
+++ b/sci-biology/screed/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+</pkgmetadata>
diff --git a/sci-biology/screed/screed-0.7.1.ebuild b/sci-biology/screed/screed-0.7.1.ebuild
new file mode 100644
index 0000000..c67749b
--- /dev/null
+++ b/sci-biology/screed/screed-0.7.1.ebuild
@@ -0,0 +1,19 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1
+
+DESCRIPTION="A short read database"
+HOMEPAGE="https://pypi.python.org/pypi/screed http://github.com/ged-lab/screed/"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/screed/
@ 2014-03-22 9:45 Justin Lecher
0 siblings, 0 replies; 7+ messages in thread
From: Justin Lecher @ 2014-03-22 9:45 UTC (permalink / raw
To: gentoo-commits
commit: 0db93b208eb5a2a132b35fec09e22f7461d24de1
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Mar 18 19:26:16 2014 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Mar 22 09:44:40 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0db93b20
sci-biology/screed: New addition written by me
Package-Manager: portage-2.2.8-r1
---
sci-biology/screed/ChangeLog | 10 ++++++++++
sci-biology/screed/metadata.xml | 5 +++++
sci-biology/screed/screed-0.7.1.ebuild | 19 +++++++++++++++++++
3 files changed, 34 insertions(+)
diff --git a/sci-biology/screed/ChangeLog b/sci-biology/screed/ChangeLog
new file mode 100644
index 0000000..277d423
--- /dev/null
+++ b/sci-biology/screed/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/screed
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*screed-0.7.1 (18 Mar 2014)
+
+ 18 Mar 2014; Justin Lecher <jlec@gentoo.org> +screed-0.7.1.ebuild,
+ +metadata.xml:
+ New addition written by me
+
diff --git a/sci-biology/screed/metadata.xml b/sci-biology/screed/metadata.xml
new file mode 100644
index 0000000..f17a827
--- /dev/null
+++ b/sci-biology/screed/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+</pkgmetadata>
diff --git a/sci-biology/screed/screed-0.7.1.ebuild b/sci-biology/screed/screed-0.7.1.ebuild
new file mode 100644
index 0000000..c67749b
--- /dev/null
+++ b/sci-biology/screed/screed-0.7.1.ebuild
@@ -0,0 +1,19 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1
+
+DESCRIPTION="A short read database"
+HOMEPAGE="https://pypi.python.org/pypi/screed http://github.com/ged-lab/screed/"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/screed/
@ 2014-09-16 17:01 Christoph Junghans
0 siblings, 0 replies; 7+ messages in thread
From: Christoph Junghans @ 2014-09-16 17:01 UTC (permalink / raw
To: gentoo-commits
commit: 8305cfad07535c31b121a776c899a558f028ff2b
Author: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Tue Sep 16 16:25:11 2014 +0000
Commit: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Tue Sep 16 16:25:11 2014 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=8305cfad
removed empty line
Package-Manager: portage-2.2.8-r1
---
sci-biology/screed/ChangeLog | 4 +++-
sci-biology/screed/screed-0.7.1.ebuild | 1 -
2 files changed, 3 insertions(+), 2 deletions(-)
diff --git a/sci-biology/screed/ChangeLog b/sci-biology/screed/ChangeLog
index 277d423..28c0561 100644
--- a/sci-biology/screed/ChangeLog
+++ b/sci-biology/screed/ChangeLog
@@ -2,9 +2,11 @@
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 16 Sep 2014; Christoph Junghans <ottxor@gentoo.org> screed-0.7.1.ebuild:
+ removed empty line
+
*screed-0.7.1 (18 Mar 2014)
18 Mar 2014; Justin Lecher <jlec@gentoo.org> +screed-0.7.1.ebuild,
+metadata.xml:
New addition written by me
-
diff --git a/sci-biology/screed/screed-0.7.1.ebuild b/sci-biology/screed/screed-0.7.1.ebuild
index c67749b..481e89a 100644
--- a/sci-biology/screed/screed-0.7.1.ebuild
+++ b/sci-biology/screed/screed-0.7.1.ebuild
@@ -16,4 +16,3 @@ SLOT="0"
LICENSE="BSD"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE=""
-
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/screed/
@ 2015-06-05 11:20 Justin Lecher
0 siblings, 0 replies; 7+ messages in thread
From: Justin Lecher @ 2015-06-05 11:20 UTC (permalink / raw
To: gentoo-commits
commit: a624fd61ce5c0409a41f25d795fc20f84f181255
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Jun 5 11:12:41 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Jun 5 11:12:41 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a624fd61
sci-biology/screed: Add github to remote-id in metadata.xml
Package-Manager: portage-2.2.20
sci-biology/screed/ChangeLog | 5 ++++-
sci-biology/screed/metadata.xml | 1 +
2 files changed, 5 insertions(+), 1 deletion(-)
diff --git a/sci-biology/screed/ChangeLog b/sci-biology/screed/ChangeLog
index 28c0561..66b9d34 100644
--- a/sci-biology/screed/ChangeLog
+++ b/sci-biology/screed/ChangeLog
@@ -1,7 +1,10 @@
# ChangeLog for sci-biology/screed
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 05 Jun 2015; Justin Lecher <jlec@gentoo.org> metadata.xml:
+ sci-biology/screed: Add github to remote-id in metadata.xml
+
16 Sep 2014; Christoph Junghans <ottxor@gentoo.org> screed-0.7.1.ebuild:
removed empty line
diff --git a/sci-biology/screed/metadata.xml b/sci-biology/screed/metadata.xml
index d0fc4fe..a773552 100644
--- a/sci-biology/screed/metadata.xml
+++ b/sci-biology/screed/metadata.xml
@@ -4,5 +4,6 @@
<herd>sci-biology</herd>
<upstream>
<remote-id type="pypi">screed</remote-id>
+ <remote-id type="github">ged-lab/screed</remote-id>
</upstream>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/screed/
@ 2016-09-01 10:24 Martin Mokrejs
0 siblings, 0 replies; 7+ messages in thread
From: Martin Mokrejs @ 2016-09-01 10:24 UTC (permalink / raw
To: gentoo-commits
commit: a551d96f895943058cf60d73a702f066b5ad494f
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Sep 1 10:24:10 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Sep 1 10:24:10 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a551d96f
sci-biology/screed: version bump
Package-Manager: portage-2.3.0
sci-biology/screed/{screed-0.7.1.ebuild => screed-0.9.ebuild} | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/sci-biology/screed/screed-0.7.1.ebuild b/sci-biology/screed/screed-0.9.ebuild
similarity index 67%
rename from sci-biology/screed/screed-0.7.1.ebuild
rename to sci-biology/screed/screed-0.9.ebuild
index d8dd474..4df89f4 100644
--- a/sci-biology/screed/screed-0.7.1.ebuild
+++ b/sci-biology/screed/screed-0.9.ebuild
@@ -1,14 +1,14 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
-PYTHON_COMPAT=( python2_7 )
+PYTHON_COMPAT=( python2_7 python3_1 python3_3 python3_4 python3_5 )
inherit distutils-r1
-DESCRIPTION="A short read database"
+DESCRIPTION="Short read sequence utilities"
HOMEPAGE="https://pypi.python.org/pypi/screed http://github.com/ged-lab/screed/"
SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/screed/
@ 2020-12-30 19:25 Aisha Tammy
0 siblings, 0 replies; 7+ messages in thread
From: Aisha Tammy @ 2020-12-30 19:25 UTC (permalink / raw
To: gentoo-commits
commit: daa22b9ef0e50837ee522d59befd90c6de9a701b
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Wed Dec 30 18:35:10 2020 +0000
Commit: Aisha Tammy <gentoo <AT> aisha <DOT> cc>
CommitDate: Wed Dec 30 19:02:35 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=daa22b9e
sci-biology/screed: version bump 1.0.4
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
Signed-off-by: Aisha Tammy <gentoo <AT> aisha.cc>
.../screed/{screed-0.9.ebuild => screed-1.0.4.ebuild} | 17 +++++++++++++----
1 file changed, 13 insertions(+), 4 deletions(-)
diff --git a/sci-biology/screed/screed-0.9.ebuild b/sci-biology/screed/screed-1.0.4.ebuild
similarity index 53%
rename from sci-biology/screed/screed-0.9.ebuild
rename to sci-biology/screed/screed-1.0.4.ebuild
index fe8f49405..eab1748f4 100644
--- a/sci-biology/screed/screed-0.9.ebuild
+++ b/sci-biology/screed/screed-1.0.4.ebuild
@@ -1,9 +1,9 @@
# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
-PYTHON_COMPAT=( python2_7 python3_3 python3_4 python3_5 )
+PYTHON_COMPAT=( python3_{7,8,9} )
inherit distutils-r1
@@ -13,5 +13,14 @@ SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
SLOT="0"
LICENSE="BSD"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+distutils_enable_tests --install pytest
+
+RDEPEND="dev-python/bz2file[${PYTHON_USEDEP}]"
+
+python_prepare_all() {
+ # do not depend on pytest-runner
+ sed -i "/pytest-runner/d" setup.py || die
+ distutils-r1_python_prepare_all
+}
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/screed/
@ 2023-05-02 12:15 Andrew Ammerlaan
0 siblings, 0 replies; 7+ messages in thread
From: Andrew Ammerlaan @ 2023-05-02 12:15 UTC (permalink / raw
To: gentoo-commits
commit: f61e0f0d43f14de5f690a9b6b925174df369564a
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue May 2 12:11:24 2023 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue May 2 12:15:19 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f61e0f0d
sci-biology/screed: treeclean
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/screed/metadata.xml | 12 ------------
sci-biology/screed/screed-1.0.4.ebuild | 26 --------------------------
2 files changed, 38 deletions(-)
diff --git a/sci-biology/screed/metadata.xml b/sci-biology/screed/metadata.xml
deleted file mode 100644
index 297401f3d..000000000
--- a/sci-biology/screed/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="github">ged-lab/screed</remote-id>
- <remote-id type="pypi">screed</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/sci-biology/screed/screed-1.0.4.ebuild b/sci-biology/screed/screed-1.0.4.ebuild
deleted file mode 100644
index eab1748f4..000000000
--- a/sci-biology/screed/screed-1.0.4.ebuild
+++ /dev/null
@@ -1,26 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{7,8,9} )
-
-inherit distutils-r1
-
-DESCRIPTION="Short read sequence utilities"
-HOMEPAGE="https://pypi.python.org/pypi/screed https://github.com/ged-lab/screed/"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~x86"
-
-distutils_enable_tests --install pytest
-
-RDEPEND="dev-python/bz2file[${PYTHON_USEDEP}]"
-
-python_prepare_all() {
- # do not depend on pytest-runner
- sed -i "/pytest-runner/d" setup.py || die
- distutils-r1_python_prepare_all
-}
^ permalink raw reply related [flat|nested] 7+ messages in thread
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2016-09-01 10:24 Martin Mokrejs
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2014-03-22 9:45 Justin Lecher
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