* [gentoo-commits] proj/sci:master commit in: sci-biology/ruffus/
@ 2014-03-23 21:02 Martin Mokrejs
0 siblings, 0 replies; 5+ messages in thread
From: Martin Mokrejs @ 2014-03-23 21:02 UTC (permalink / raw
To: gentoo-commits
commit: dfd7fccda543f814d4f7d9b840ad85c6f003bef5
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 23 21:01:34 2014 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 23 21:01:34 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=dfd7fccd
sci-biology/ruffus: new package, maybe better to place it under dev-python/
---
sci-biology/ruffus/ChangeLog | 10 ++++++++++
sci-biology/ruffus/metadata.xml | 9 +++++++++
sci-biology/ruffus/ruffus-9999.ebuild | 24 ++++++++++++++++++++++++
3 files changed, 43 insertions(+)
diff --git a/sci-biology/ruffus/ChangeLog b/sci-biology/ruffus/ChangeLog
new file mode 100644
index 0000000..57c9ac6
--- /dev/null
+++ b/sci-biology/ruffus/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/ruffus
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*ruffus-9999 (23 Mar 2014)
+
+ 23 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ +ruffus-9999.ebuild, +metadata.xml:
+ new package, works but needs some versioned checkout
+
diff --git a/sci-biology/ruffus/metadata.xml b/sci-biology/ruffus/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/ruffus/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
diff --git a/sci-biology/ruffus/ruffus-9999.ebuild b/sci-biology/ruffus/ruffus-9999.ebuild
new file mode 100644
index 0000000..b75b961
--- /dev/null
+++ b/sci-biology/ruffus/ruffus-9999.ebuild
@@ -0,0 +1,24 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PYTHON_COMPAT=( python{2_6,2_7} )
+
+inherit distutils-r1 git-r3
+
+DESCRIPTION="Python module to support computational pipelines"
+HOMEPAGE="http://www.ruffus.org.uk"
+# SRC_URI="http://code.google.com/p/ruffus/downloads/detail?name=ruffus-2.4beta3.tar.gz"
+EGIT_REPO_URI="http://code.google.com/p/ruffus"
+# git@github.com:bunbun/ruffus.git
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]
+ media-gfx/graphviz"
+RDEPEND="${DEPEND}"
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ruffus/
@ 2017-02-18 16:07 Martin Mokrejs
0 siblings, 0 replies; 5+ messages in thread
From: Martin Mokrejs @ 2017-02-18 16:07 UTC (permalink / raw
To: gentoo-commits
commit: a37d9cfcade3812e2dd861a39186e343550e3a91
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Feb 18 16:07:27 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Feb 18 16:07:27 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a37d9cfc
sci-biology/ruffus: add last release version
Package-Manager: Portage-2.3.3, Repoman-2.3.1
sci-biology/ruffus/ruffus-2.6.3.ebuild | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
diff --git a/sci-biology/ruffus/ruffus-2.6.3.ebuild b/sci-biology/ruffus/ruffus-2.6.3.ebuild
new file mode 100644
index 000000000..72854390c
--- /dev/null
+++ b/sci-biology/ruffus/ruffus-2.6.3.ebuild
@@ -0,0 +1,23 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1
+
+DESCRIPTION="Python module to support computational pipelines"
+HOMEPAGE="http://www.ruffus.org.uk"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+# git@github.com:bunbun/ruffus.git
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]
+ media-gfx/graphviz"
+RDEPEND="${DEPEND}"
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ruffus/
@ 2017-07-28 20:05 Martin Mokrejs
0 siblings, 0 replies; 5+ messages in thread
From: Martin Mokrejs @ 2017-07-28 20:05 UTC (permalink / raw
To: gentoo-commits
commit: ea56a43cf0e2a5ead0e9549eed6fb8a9f32f9415
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Jul 28 19:16:30 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jul 28 20:05:19 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ea56a43c
sci-biology/ruffus: pint EGIT_REPO_URI to the archive URL of code.google.com
Package-Manager: Portage-2.3.6, Repoman-2.3.3
sci-biology/ruffus/ruffus-9999.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-biology/ruffus/ruffus-9999.ebuild b/sci-biology/ruffus/ruffus-9999.ebuild
index a786ba432..9c12d9170 100644
--- a/sci-biology/ruffus/ruffus-9999.ebuild
+++ b/sci-biology/ruffus/ruffus-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -10,7 +10,7 @@ inherit distutils-r1 git-r3
DESCRIPTION="Python module to support computational pipelines"
HOMEPAGE="http://www.ruffus.org.uk"
# SRC_URI="http://code.google.com/p/ruffus/downloads/detail?name=ruffus-2.4beta3.tar.gz"
-EGIT_REPO_URI="http://code.google.com/p/ruffus"
+EGIT_REPO_URI="https://code.google.com/archive/p/ruffus"
# git@github.com:bunbun/ruffus.git
LICENSE="MIT"
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ruffus/
@ 2021-01-03 6:31 Horea Christian
0 siblings, 0 replies; 5+ messages in thread
From: Horea Christian @ 2021-01-03 6:31 UTC (permalink / raw
To: gentoo-commits
commit: 3cba6c804e2e0d0177c238f41556a8f2ede57251
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Jan 2 13:44:32 2021 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sun Jan 3 06:25:30 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3cba6c80
sci-biology/ruffus: version bump, bump py targets, enable sphinx
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
.../{ruffus-2.6.3.ebuild => ruffus-2.8.4.ebuild} | 20 +++++++++++--------
sci-biology/ruffus/ruffus-9999.ebuild | 23 ----------------------
2 files changed, 12 insertions(+), 31 deletions(-)
diff --git a/sci-biology/ruffus/ruffus-2.6.3.ebuild b/sci-biology/ruffus/ruffus-2.8.4.ebuild
similarity index 52%
rename from sci-biology/ruffus/ruffus-2.6.3.ebuild
rename to sci-biology/ruffus/ruffus-2.8.4.ebuild
index b4417d29c..beda7db9a 100644
--- a/sci-biology/ruffus/ruffus-2.6.3.ebuild
+++ b/sci-biology/ruffus/ruffus-2.8.4.ebuild
@@ -1,22 +1,26 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
-PYTHON_COMPAT=( python2_7 )
+PYTHON_COMPAT=( python3_{7,8,9} )
inherit distutils-r1
DESCRIPTION="Python module to support computational pipelines"
HOMEPAGE="http://www.ruffus.org.uk"
SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-# git@github.com:bunbun/ruffus.git
LICENSE="MIT"
SLOT="0"
KEYWORDS="~amd64 ~x86"
-IUSE=""
-DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]
- media-gfx/graphviz"
-RDEPEND="${DEPEND}"
+# TODO: why does this not work: Duplicate pipeline
+RESTRICT="test"
+
+RDEPEND="
+ media-gfx/graphviz
+"
+
+distutils_enable_sphinx doc dev-python/sphinx_rtd_theme
+distutils_enable_tests pytest
diff --git a/sci-biology/ruffus/ruffus-9999.ebuild b/sci-biology/ruffus/ruffus-9999.ebuild
deleted file mode 100644
index 9c12d9170..000000000
--- a/sci-biology/ruffus/ruffus-9999.ebuild
+++ /dev/null
@@ -1,23 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1 git-r3
-
-DESCRIPTION="Python module to support computational pipelines"
-HOMEPAGE="http://www.ruffus.org.uk"
-# SRC_URI="http://code.google.com/p/ruffus/downloads/detail?name=ruffus-2.4beta3.tar.gz"
-EGIT_REPO_URI="https://code.google.com/archive/p/ruffus"
-# git@github.com:bunbun/ruffus.git
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]
- media-gfx/graphviz"
-RDEPEND="${DEPEND}"
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/ruffus/
@ 2023-05-02 12:15 Andrew Ammerlaan
0 siblings, 0 replies; 5+ messages in thread
From: Andrew Ammerlaan @ 2023-05-02 12:15 UTC (permalink / raw
To: gentoo-commits
commit: 5d079903f9d5a83ffb92acc10ceae431c208f6eb
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue May 2 12:11:13 2023 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue May 2 12:15:18 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=5d079903
sci-biology/ruffus: treeclean
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/ruffus/metadata.xml | 15 ---------------
sci-biology/ruffus/ruffus-2.8.4.ebuild | 26 --------------------------
2 files changed, 41 deletions(-)
diff --git a/sci-biology/ruffus/metadata.xml b/sci-biology/ruffus/metadata.xml
deleted file mode 100644
index 1a91c19c5..000000000
--- a/sci-biology/ruffus/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="pypi">ruffus</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/sci-biology/ruffus/ruffus-2.8.4.ebuild b/sci-biology/ruffus/ruffus-2.8.4.ebuild
deleted file mode 100644
index 28a03c4e6..000000000
--- a/sci-biology/ruffus/ruffus-2.8.4.ebuild
+++ /dev/null
@@ -1,26 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{7,8,9} )
-
-inherit distutils-r1
-
-DESCRIPTION="Python module to support computational pipelines"
-HOMEPAGE="http://www.ruffus.org.uk"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-# TODO: why does this not work: Duplicate pipeline
-RESTRICT="test"
-
-RDEPEND="
- media-gfx/graphviz
-"
-
-distutils_enable_sphinx doc dev-python/sphinx-rtd-theme
-distutils_enable_tests pytest
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