[gentoo-commits] proj/sci:master commit in: profiles/, sci-biology/chiron/

[gentoo-commits] proj/sci:master commit in: profiles/, sci-biology/chiron/

[Andrew Ammerlaan]

commit:     797241ba80bff8d62325714f8770582a11484d87
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue Apr 25 11:31:16 2023 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue Apr 25 11:31:16 2023 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=797241ba

sci-biology/chiron: treeclean

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 profiles/package.mask                    |  4 ----
 sci-biology/chiron/chiron-0.6.1.1.ebuild | 29 -----------------------------
 sci-biology/chiron/metadata.xml          | 12 ------------
 3 files changed, 45 deletions(-)

diff --git a/profiles/package.mask b/profiles/package.mask
index 20d20abc8..d39812beb 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -29,7 +29,3 @@
 ## app-misc/some-package
 
 #--- END OF EXAMPLES ---
-
-# Andrew Ammerlaan <andrewammerlaan@gentoo.org) (12 Jan 2023)
-# Needs bump of PYTHON_COMPAT to at least python3_10
-sci-biology/chiron

diff --git a/sci-biology/chiron/chiron-0.6.1.1.ebuild b/sci-biology/chiron/chiron-0.6.1.1.ebuild
deleted file mode 100644
index 162a03129..000000000
--- a/sci-biology/chiron/chiron-0.6.1.1.ebuild
+++ /dev/null
@@ -1,29 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{8..9} )
-DISTUTILS_USE_SETUPTOOLS=rdepend
-
-inherit distutils-r1
-
-DESCRIPTION="A deep neural network basecaller for nanopore sequencing"
-HOMEPAGE="https://github.com/haotianteng/chiron
-	https://www.biorxiv.org/content/early/2017/09/12/179531"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-
-LICENSE="MPL-2.0"
-SLOT="0"
-KEYWORDS="~amd64"
-
-RDEPEND="
-	dev-python/h5py[${PYTHON_USEDEP}]
-	sci-biology/mappy[${PYTHON_USEDEP}]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-python/statsmodels[${PYTHON_USEDEP}]
-	dev-python/tqdm[${PYTHON_USEDEP}]
-	sci-biology/biopython[${PYTHON_USEDEP}]
-	dev-python/packaging[${PYTHON_USEDEP}]
-	sci-libs/tensorflow[${PYTHON_USEDEP}]
-"

diff --git a/sci-biology/chiron/metadata.xml b/sci-biology/chiron/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-biology/chiron/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-</pkgmetadata>