From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (2048 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 9D14F15ACFB for ; Tue, 25 Apr 2023 11:28:20 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 8B4D3E09B4; Tue, 25 Apr 2023 11:28:19 +0000 (UTC) Received: from smtp.gentoo.org (woodpecker.gentoo.org [140.211.166.183]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 6FE3EE09B4 for ; Tue, 25 Apr 2023 11:28:19 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 5E828340EE0 for ; Tue, 25 Apr 2023 11:28:18 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id D1366A4F for ; Tue, 25 Apr 2023 11:28:16 +0000 (UTC) From: "Andrew Ammerlaan" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Andrew Ammerlaan" Message-ID: <1682421966.0ceb993976976439639c7414d3e2aa2be5bb64de.andrewammerlaan@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/tmhmm/, profiles/ X-VCS-Repository: proj/sci X-VCS-Files: profiles/package.mask sci-biology/tmhmm/metadata.xml sci-biology/tmhmm/tmhmm-2.0c.ebuild X-VCS-Directories: sci-biology/tmhmm/ profiles/ X-VCS-Committer: andrewammerlaan X-VCS-Committer-Name: Andrew Ammerlaan X-VCS-Revision: 0ceb993976976439639c7414d3e2aa2be5bb64de X-VCS-Branch: master Date: Tue, 25 Apr 2023 11:28:16 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 30538a1d-8600-447b-ba78-8eb56ac00554 X-Archives-Hash: e48b0f3e53fac8dde39a2e6f086a90a1 commit: 0ceb993976976439639c7414d3e2aa2be5bb64de Author: Andrew Ammerlaan gentoo org> AuthorDate: Tue Apr 25 11:26:06 2023 +0000 Commit: Andrew Ammerlaan gentoo org> CommitDate: Tue Apr 25 11:26:06 2023 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0ceb9939 sci-biology/tmhmm: treeclean Bug: https://bugs.gentoo.org/902383 Signed-off-by: Andrew Ammerlaan gentoo.org> profiles/package.mask | 1 - sci-biology/tmhmm/metadata.xml | 8 -------- sci-biology/tmhmm/tmhmm-2.0c.ebuild | 39 ------------------------------------- 3 files changed, 48 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index 51da8d80c..15acd8546 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -41,7 +41,6 @@ sci-biology/RSeQC # Andrew Ammerlaan - - - - sci-biology@gentoo.org - Gentoo Biology Project - - diff --git a/sci-biology/tmhmm/tmhmm-2.0c.ebuild b/sci-biology/tmhmm/tmhmm-2.0c.ebuild deleted file mode 100644 index dc50101fa..000000000 --- a/sci-biology/tmhmm/tmhmm-2.0c.ebuild +++ /dev/null @@ -1,39 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -DESCRIPTION="Prediction of transmembrane helices in proteins" -HOMEPAGE="http://www.cbs.dtu.dk/services/TMHMM/" -SRC_URI="${P}.Linux.tar.gz" - -LICENSE="tmhmm" -SLOT="0" -KEYWORDS="~amd64 ~x86" - -RESTRICT="fetch" - -S="TMHMM${PV}" - -pkg_nofetch() { - einfo "Please visit ${HOMEPAGE} and obtain the file" - einfo "\"${SRC_URI}\", then place it into your DISTDIR folder" -} - -src_prepare() { - default - sed -i '1 i #!/usr/bin/env perl' "${S}"/bin/tmhmm* || die - sed -i '1 a $opt_basedir = "/opt/tmhmm";' "${S}"/bin/tmhmm || die -} - -src_install() { - exeinto /opt/${PN}/bin - doexe bin/* - - insinto /opt/${PN}/lib - doins lib/* - - dosym ../${PN}/bin/tmhmm /opt/bin/tmhmm - - dodoc README TMHMM2.0.html -}