[gentoo-commits] proj/sci:master commit in: sci-biology/tmhmm/, profiles/

[gentoo-commits] proj/sci:master commit in: sci-biology/tmhmm/, profiles/

[Andrew Ammerlaan]

commit:     0ceb993976976439639c7414d3e2aa2be5bb64de
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue Apr 25 11:26:06 2023 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue Apr 25 11:26:06 2023 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=0ceb9939

sci-biology/tmhmm: treeclean

Bug: https://bugs.gentoo.org/902383
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 profiles/package.mask               |  1 -
 sci-biology/tmhmm/metadata.xml      |  8 --------
 sci-biology/tmhmm/tmhmm-2.0c.ebuild | 39 -------------------------------------
 3 files changed, 48 deletions(-)

diff --git a/profiles/package.mask b/profiles/package.mask
index 51da8d80c..15acd8546 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -41,7 +41,6 @@ sci-biology/RSeQC
 
 # Andrew Ammerlaan <andrewammerlaan@gentoo.org) (10 Feb 2023)
 # Fetch restricted ebuilds without proper manifest entry
-sci-biology/tmhmm
 sci-chemistry/ligplot+
 sci-chemistry/nmrview
 sci-chemistry/rosetta-tools

diff --git a/sci-biology/tmhmm/metadata.xml b/sci-biology/tmhmm/metadata.xml
deleted file mode 100644
index 8417d1580..000000000
--- a/sci-biology/tmhmm/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-</pkgmetadata>

diff --git a/sci-biology/tmhmm/tmhmm-2.0c.ebuild b/sci-biology/tmhmm/tmhmm-2.0c.ebuild
deleted file mode 100644
index dc50101fa..000000000
--- a/sci-biology/tmhmm/tmhmm-2.0c.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-DESCRIPTION="Prediction of transmembrane helices in proteins"
-HOMEPAGE="http://www.cbs.dtu.dk/services/TMHMM/"
-SRC_URI="${P}.Linux.tar.gz"
-
-LICENSE="tmhmm"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-RESTRICT="fetch"
-
-S="TMHMM${PV}"
-
-pkg_nofetch() {
-	einfo "Please visit ${HOMEPAGE} and obtain the file"
-	einfo "\"${SRC_URI}\", then place it into your DISTDIR folder"
-}
-
-src_prepare() {
-	default
-	sed -i '1 i #!/usr/bin/env perl' "${S}"/bin/tmhmm* || die
-	sed -i '1 a $opt_basedir = "/opt/tmhmm";' "${S}"/bin/tmhmm || die
-}
-
-src_install() {
-	exeinto /opt/${PN}/bin
-	doexe bin/*
-
-	insinto /opt/${PN}/lib
-	doins lib/*
-
-	dosym ../${PN}/bin/tmhmm /opt/bin/tmhmm
-
-	dodoc README TMHMM2.0.html
-}