From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (2048 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 61A5A15A7DA for ; Fri, 17 Mar 2023 13:35:35 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 9EC7A2BC11E; Fri, 17 Mar 2023 13:35:34 +0000 (UTC) Received: from smtp.gentoo.org (woodpecker.gentoo.org [140.211.166.183]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 748192BC11D for ; Fri, 17 Mar 2023 13:35:34 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 923F0335CB7 for ; Fri, 17 Mar 2023 13:35:33 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 2F4928D4 for ; Fri, 17 Mar 2023 13:35:32 +0000 (UTC) From: "Andrew Ammerlaan" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Andrew Ammerlaan" Message-ID: <1679060086.739bbba2330bc2891ca90633e1fc70d56a08eece.andrewammerlaan@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: dev-python/snakemake/ X-VCS-Repository: proj/sci X-VCS-Files: dev-python/snakemake/metadata.xml dev-python/snakemake/snakemake-5.32.2.ebuild X-VCS-Directories: dev-python/snakemake/ X-VCS-Committer: andrewammerlaan X-VCS-Committer-Name: Andrew Ammerlaan X-VCS-Revision: 739bbba2330bc2891ca90633e1fc70d56a08eece X-VCS-Branch: master Date: Fri, 17 Mar 2023 13:35:32 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: fb75cc15-6bc6-40da-a09e-d8d8e91101a4 X-Archives-Hash: b15205ca108b00271c00e9bc1594c792 commit: 739bbba2330bc2891ca90633e1fc70d56a08eece Author: Andrew Ammerlaan gentoo org> AuthorDate: Fri Mar 17 12:19:12 2023 +0000 Commit: Andrew Ammerlaan gentoo org> CommitDate: Fri Mar 17 13:34:46 2023 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=739bbba2 Revert "dev-python/snakemake: treeclean" This reverts commit f853476e85be13cb1ac9f36e8fbb25ca5e12c464. Signed-off-by: Andrew Ammerlaan gentoo.org> dev-python/snakemake/metadata.xml | 13 +++++++ dev-python/snakemake/snakemake-5.32.2.ebuild | 56 ++++++++++++++++++++++++++++ 2 files changed, 69 insertions(+) diff --git a/dev-python/snakemake/metadata.xml b/dev-python/snakemake/metadata.xml new file mode 100644 index 000000000..d9550c50f --- /dev/null +++ b/dev-python/snakemake/metadata.xml @@ -0,0 +1,13 @@ + + + + + mschu.dev@gmail.com + Michael Schubert + + + johanneskoester/snakemake + snakemake + snakemake/snakemake + + diff --git a/dev-python/snakemake/snakemake-5.32.2.ebuild b/dev-python/snakemake/snakemake-5.32.2.ebuild new file mode 100644 index 000000000..59d2f061a --- /dev/null +++ b/dev-python/snakemake/snakemake-5.32.2.ebuild @@ -0,0 +1,56 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{8..9} ) +DISTUTILS_USE_SETUPTOOLS=rdepend + +inherit distutils-r1 + +DESCRIPTION="Make-like task language" +HOMEPAGE="https://snakemake.readthedocs.io" +SRC_URI="https://github.com/${PN}/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +# missing test dep google.cloud +RESTRICT="test" + +BDEPEND="test? ( + dev-python/requests-mock[${PYTHON_USEDEP}] + dev-python/google-api-python-client[${PYTHON_USEDEP}] + dev-python/jinja[${PYTHON_USEDEP}] + dev-python/networkx[${PYTHON_USEDEP}] + dev-python/pygments[${PYTHON_USEDEP}] + dev-python/pygraphviz[${PYTHON_USEDEP}] + dev-python/oauth2client[${PYTHON_USEDEP}] + net-libs/google-cloud-cpp +)" + +RDEPEND=" + dev-python/appdirs[${PYTHON_USEDEP}] + dev-python/ConfigArgParse[${PYTHON_USEDEP}] + dev-python/datrie[${PYTHON_USEDEP}] + dev-python/docutils[${PYTHON_USEDEP}] + dev-python/GitPython[${PYTHON_USEDEP}] + dev-python/jsonschema[${PYTHON_USEDEP}] + dev-python/nbformat[${PYTHON_USEDEP}] + dev-python/psutil[${PYTHON_USEDEP}] + dev-python/pyyaml[${PYTHON_USEDEP}] + dev-python/ratelimit[${PYTHON_USEDEP}] + dev-python/requests[${PYTHON_USEDEP}] + dev-python/toposort[${PYTHON_USEDEP}] + dev-python/wrapt[${PYTHON_USEDEP}] + sci-mathematics/pulp[${PYTHON_USEDEP}] +" + +distutils_enable_sphinx docs \ + dev-python/sphinxcontrib-napoleon \ + dev-python/sphinx-argparse \ + dev-python/sphinx_rtd_theme \ + dev-python/docutils \ + dev-python/recommonmark +distutils_enable_tests pytest