* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2021-06-18 19:18 David Seifert
0 siblings, 0 replies; 38+ messages in thread
From: David Seifert @ 2021-06-18 19:18 UTC (permalink / raw
To: gentoo-commits
commit: 52534e4620935c7d19b225911ecc96ab838ee1e8
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Fri Jun 18 19:17:26 2021 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Fri Jun 18 19:17:26 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=52534e46
sci-chemistry/dssp: Depend on dev-libs/boost:=[threads(+)]
Package-Manager: Portage-3.0.20, Repoman-3.0.3
Signed-off-by: David Seifert <soap <AT> gentoo.org>
sci-chemistry/dssp/{dssp-2.2.1-r1.ebuild => dssp-2.2.1-r2.ebuild} | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-chemistry/dssp/dssp-2.2.1-r1.ebuild b/sci-chemistry/dssp/dssp-2.2.1-r2.ebuild
similarity index 92%
rename from sci-chemistry/dssp/dssp-2.2.1-r1.ebuild
rename to sci-chemistry/dssp/dssp-2.2.1-r2.ebuild
index b660e9ef3c9..63075d4d429 100644
--- a/sci-chemistry/dssp/dssp-2.2.1-r1.ebuild
+++ b/sci-chemistry/dssp/dssp-2.2.1-r2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -14,7 +14,7 @@ SLOT="0"
KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
IUSE=""
-RDEPEND="dev-libs/boost:=[threads]"
+RDEPEND="dev-libs/boost:=[threads(+)]"
DEPEND="${RDEPEND}"
PATCHES=(
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2021-09-02 12:01 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2021-09-02 12:01 UTC (permalink / raw
To: gentoo-commits
commit: 4e4e045da2570733e3a7cf50ed1712945d44dc2f
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Thu Sep 2 11:59:21 2021 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Thu Sep 2 12:00:49 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4e4e045d
sci-chemistry/dssp: Bump to 3.0.11
It is the latest version that seems to work with gmx do_dssp from my tests,
also the one packaged in Fedora currently
Closes: https://bugs.gentoo.org/802417
Closes: https://bugs.gentoo.org/808669
Package-Manager: Portage-3.0.22, Repoman-3.0.3
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/Manifest | 1 +
sci-chemistry/dssp/dssp-3.0.11.ebuild | 42 +++++++++++++++++++++++++++++++++++
2 files changed, 43 insertions(+)
diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest
index 170fb6728d5..95f2e93d4a4 100644
--- a/sci-chemistry/dssp/Manifest
+++ b/sci-chemistry/dssp/Manifest
@@ -1,2 +1,3 @@
DIST dssp-2.2.1.tgz 47141 BLAKE2B 34d8b2db8797a8c23763766c0214337f03584c4be52c1bc820a0df0db6a5f78ac0229aafdd47a60b8fd6f4832abf0399663c53f9e898c75f08ecbe22b141c8da SHA512 4a273714d6b3230daea166caa7f4117d5ccb225bea0cf1bc2eb61539b6cc8e227d0ba19047d61f0ad0d1d6bc2efdec9c193bd44341e15ef0950acb4a22498811
+DIST dssp-3.0.11.tar.gz 168085 BLAKE2B e1c42fd22cfb2287f10b5deae48b56a4583d4a67737a3485dcbd160d1597a15c2d5105c3794c875d8001abede1c014efb4f7f5b7c250f867bdf9ed95a0860217 SHA512 a0cfe44e517ff1f909ef2928b62ae2c639c6bddfd8a0fb538883f647fd2771e00da68e0fd2521aa02ba3c6d1b0c9b784b7fe142392af3a3abf6ea89f1546bd9d
DIST dssp-4.0.1_p20210831.tar.gz 121793 BLAKE2B 1e028b086b418772a93db350f8084d1786996ff6ea935d236b1431d8f4a07c0b33ebf374a4c4d5d4d243952f3f56e29a548ce09763863a1e0c529755fba6c211 SHA512 62f1ac781dd3d6f3436e6c155ae1a470d0baf6a6d9f6d6729034a7a5ef41550f76d0473c688d235279336306c9f3598377c056cddd6d00a89a826fbb04c1bfb3
diff --git a/sci-chemistry/dssp/dssp-3.0.11.ebuild b/sci-chemistry/dssp/dssp-3.0.11.ebuild
new file mode 100644
index 00000000000..b0771e31047
--- /dev/null
+++ b/sci-chemistry/dssp/dssp-3.0.11.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit autotools
+
+MY_PN="hssp"
+MY_P="${MY_PN}-${PV}"
+
+DESCRIPTION="The protein secondary structure standard"
+HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/cmbi/hssp"
+SRC_URI="https://github.com/cmbi/${MY_PN}/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="Boost-1.0"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+RDEPEND="
+ dev-lang/perl:=
+ dev-libs/boost:=[bzip2,zlib,threads(+)]
+"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+ default
+
+ # Fix version
+ sed -i -e "s/3.0.10/${PV}/" configure.ac || die
+
+ sed -i -e '/-Werror/d' Makefile.am || die
+
+ eautoreconf
+}
+
+src_install() {
+ default
+ dosym mkdssp /usr/bin/dssp
+ doenvd "${FILESDIR}"/30-${PN}
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2021-09-02 12:01 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2021-09-02 12:01 UTC (permalink / raw
To: gentoo-commits
commit: 73c30608dfed594378b78b10858023a7f0a19686
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Thu Sep 2 11:44:31 2021 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Thu Sep 2 12:00:42 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=73c30608
sci-chemistry/dssp: Bump to 4.0.1
Closes: https://bugs.gentoo.org/679142
Closes: https://bugs.gentoo.org/802417
Closes: https://bugs.gentoo.org/808669
Package-Manager: Portage-3.0.22, Repoman-3.0.3
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/Manifest | 1 +
sci-chemistry/dssp/dssp-4.0.1_p20210831.ebuild | 33 ++++++++++++++++++++++++++
2 files changed, 34 insertions(+)
diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest
index ada8aac8e5c..170fb6728d5 100644
--- a/sci-chemistry/dssp/Manifest
+++ b/sci-chemistry/dssp/Manifest
@@ -1 +1,2 @@
DIST dssp-2.2.1.tgz 47141 BLAKE2B 34d8b2db8797a8c23763766c0214337f03584c4be52c1bc820a0df0db6a5f78ac0229aafdd47a60b8fd6f4832abf0399663c53f9e898c75f08ecbe22b141c8da SHA512 4a273714d6b3230daea166caa7f4117d5ccb225bea0cf1bc2eb61539b6cc8e227d0ba19047d61f0ad0d1d6bc2efdec9c193bd44341e15ef0950acb4a22498811
+DIST dssp-4.0.1_p20210831.tar.gz 121793 BLAKE2B 1e028b086b418772a93db350f8084d1786996ff6ea935d236b1431d8f4a07c0b33ebf374a4c4d5d4d243952f3f56e29a548ce09763863a1e0c529755fba6c211 SHA512 62f1ac781dd3d6f3436e6c155ae1a470d0baf6a6d9f6d6729034a7a5ef41550f76d0473c688d235279336306c9f3598377c056cddd6d00a89a826fbb04c1bfb3
diff --git a/sci-chemistry/dssp/dssp-4.0.1_p20210831.ebuild b/sci-chemistry/dssp/dssp-4.0.1_p20210831.ebuild
new file mode 100644
index 00000000000..407efe50622
--- /dev/null
+++ b/sci-chemistry/dssp/dssp-4.0.1_p20210831.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+inherit cmake
+
+DESCRIPTION="The protein secondary structure standard"
+HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/PDB-REDO/dssp"
+
+COMMIT="728cc7c6c8d95460d8db453cf7adb25a89ba15f6"
+SRC_URI="https://github.com/PDB-REDO/${PN}/archive/${COMMIT}.tar.gz -> ${P}.tar.gz"
+S="${WORKDIR}/${PN}-${COMMIT}"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+BDEPEND="
+ >=dev-libs/boost-1.70.0:=[threads(+)]
+ >=sci-libs/libcifpp-1.1.1
+"
+DEPEND=""
+RDEPEND="${BDEPEND}"
+
+pkg_postinst() {
+ if has_version sci-chemistry/gromacs; then
+ ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:"
+ ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129"
+ ewarn
+ ewarn "Feel free to mask newer versions if needed."
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2021-09-02 12:01 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2021-09-02 12:01 UTC (permalink / raw
To: gentoo-commits
commit: 4d3a8d0a257c556b69fbdd61b378aafeb2a511b8
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Thu Sep 2 06:50:36 2021 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Thu Sep 2 12:00:37 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4d3a8d0a
sci-chemistry/dssp: Take the package
I use it a lot from gromacs
Package-Manager: Portage-3.0.22, Repoman-3.0.3
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/metadata.xml | 7 +++----
1 file changed, 3 insertions(+), 4 deletions(-)
diff --git a/sci-chemistry/dssp/metadata.xml b/sci-chemistry/dssp/metadata.xml
index 8937bad0b17..020b40648ee 100644
--- a/sci-chemistry/dssp/metadata.xml
+++ b/sci-chemistry/dssp/metadata.xml
@@ -1,8 +1,7 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <maintainer type="project">
- <email>sci-chemistry@gentoo.org</email>
- <name>Gentoo Chemistry Project</name>
- </maintainer>
+ <maintainer type="person">
+ <email>pacho@gentoo.org</email>
+ </maintainer>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2021-09-02 12:01 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2021-09-02 12:01 UTC (permalink / raw
To: gentoo-commits
commit: 8af47ad6d84726f323c295c3494ab36292a05bf0
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Thu Sep 2 11:50:07 2021 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Thu Sep 2 12:00:46 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8af47ad6
sci-chemistry/dssp: Needs boost with zlib and bzip2
Package-Manager: Portage-3.0.22, Repoman-3.0.3
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/dssp-2.2.1-r3.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-chemistry/dssp/dssp-2.2.1-r3.ebuild b/sci-chemistry/dssp/dssp-2.2.1-r3.ebuild
index 17a89bb51ff..8697005fc2c 100644
--- a/sci-chemistry/dssp/dssp-2.2.1-r3.ebuild
+++ b/sci-chemistry/dssp/dssp-2.2.1-r3.ebuild
@@ -14,7 +14,7 @@ SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE=""
-RDEPEND="dev-libs/boost:=[threads(+)]"
+RDEPEND="dev-libs/boost:=[bzip2,zlib,threads(+)]"
DEPEND="${RDEPEND}"
PATCHES=(
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2021-09-02 12:01 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2021-09-02 12:01 UTC (permalink / raw
To: gentoo-commits
commit: 54a9ba7ce3518fd4974ddd7834584a0c3dad9980
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Thu Sep 2 11:50:57 2021 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Thu Sep 2 12:00:48 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=54a9ba7c
sci-chemistry/dssp: Needs boost with zlib and bzip2 support
Closes: https://bugs.gentoo.org/802417
Package-Manager: Portage-3.0.22, Repoman-3.0.3
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/dssp-4.0.1_p20210831.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-chemistry/dssp/dssp-4.0.1_p20210831.ebuild b/sci-chemistry/dssp/dssp-4.0.1_p20210831.ebuild
index 407efe50622..a5e5af9c742 100644
--- a/sci-chemistry/dssp/dssp-4.0.1_p20210831.ebuild
+++ b/sci-chemistry/dssp/dssp-4.0.1_p20210831.ebuild
@@ -17,7 +17,7 @@ KEYWORDS="~amd64"
IUSE=""
BDEPEND="
- >=dev-libs/boost-1.70.0:=[threads(+)]
+ >=dev-libs/boost-1.70.0:=[bzip2,zlib,threads(+)]
>=sci-libs/libcifpp-1.1.1
"
DEPEND=""
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2021-10-03 18:45 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2021-10-03 18:45 UTC (permalink / raw
To: gentoo-commits
commit: 3ae2f860fb5615e5618a6c4ebc3da0a4e49f63b1
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Sun Oct 3 18:45:40 2021 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Sun Oct 3 18:45:40 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3ae2f860
sci-chemistry/dssp: Bump to 4.0.3
Package-Manager: Portage-3.0.24, Repoman-3.0.3
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/Manifest | 1 +
sci-chemistry/dssp/dssp-4.0.3.ebuild | 31 +++++++++++++++++++++++++++++++
2 files changed, 32 insertions(+)
diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest
index 95f2e93d4a4..9fd132f8a29 100644
--- a/sci-chemistry/dssp/Manifest
+++ b/sci-chemistry/dssp/Manifest
@@ -1,3 +1,4 @@
DIST dssp-2.2.1.tgz 47141 BLAKE2B 34d8b2db8797a8c23763766c0214337f03584c4be52c1bc820a0df0db6a5f78ac0229aafdd47a60b8fd6f4832abf0399663c53f9e898c75f08ecbe22b141c8da SHA512 4a273714d6b3230daea166caa7f4117d5ccb225bea0cf1bc2eb61539b6cc8e227d0ba19047d61f0ad0d1d6bc2efdec9c193bd44341e15ef0950acb4a22498811
DIST dssp-3.0.11.tar.gz 168085 BLAKE2B e1c42fd22cfb2287f10b5deae48b56a4583d4a67737a3485dcbd160d1597a15c2d5105c3794c875d8001abede1c014efb4f7f5b7c250f867bdf9ed95a0860217 SHA512 a0cfe44e517ff1f909ef2928b62ae2c639c6bddfd8a0fb538883f647fd2771e00da68e0fd2521aa02ba3c6d1b0c9b784b7fe142392af3a3abf6ea89f1546bd9d
DIST dssp-4.0.1_p20210831.tar.gz 121793 BLAKE2B 1e028b086b418772a93db350f8084d1786996ff6ea935d236b1431d8f4a07c0b33ebf374a4c4d5d4d243952f3f56e29a548ce09763863a1e0c529755fba6c211 SHA512 62f1ac781dd3d6f3436e6c155ae1a470d0baf6a6d9f6d6729034a7a5ef41550f76d0473c688d235279336306c9f3598377c056cddd6d00a89a826fbb04c1bfb3
+DIST dssp-4.0.3.tar.gz 122872 BLAKE2B f88c330370645b4bd4e89656ad676e443a33c38d7882145bc60e329f823eb761777713df6c7ae44550d10bcd22256ac16db358587cadd39efd6268dd869655d4 SHA512 31ca481b097c9c59f407e35eb8175638b5e4102991007090b5b4ea30db0b076f97cff45d0aa9ae01a826f7673258464b572d68714f00e210db26020cea4be094
diff --git a/sci-chemistry/dssp/dssp-4.0.3.ebuild b/sci-chemistry/dssp/dssp-4.0.3.ebuild
new file mode 100644
index 00000000000..d9d8a5740c8
--- /dev/null
+++ b/sci-chemistry/dssp/dssp-4.0.3.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+inherit cmake
+
+DESCRIPTION="The protein secondary structure standard"
+HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/PDB-REDO/dssp"
+
+SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+BDEPEND="
+ >=dev-libs/boost-1.70.0:=[zlib,threads(+)]
+ >=sci-libs/libcifpp-2.0.0
+"
+DEPEND=""
+RDEPEND="${BDEPEND}"
+
+pkg_postinst() {
+ if has_version sci-chemistry/gromacs; then
+ ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:"
+ ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129"
+ ewarn
+ ewarn "Feel free to mask newer versions if needed."
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2021-10-04 11:00 Agostino Sarubbo
0 siblings, 0 replies; 38+ messages in thread
From: Agostino Sarubbo @ 2021-10-04 11:00 UTC (permalink / raw
To: gentoo-commits
commit: 86e20d58e48c56abd8c639be0949d5211b949114
Author: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Mon Oct 4 11:00:11 2021 +0000
Commit: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Mon Oct 4 11:00:11 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=86e20d58
sci-chemistry/dssp: amd64 stable wrt bug #816123
Package-Manager: Portage-3.0.20, Repoman-3.0.3
RepoMan-Options: --include-arches="amd64"
Signed-off-by: Agostino Sarubbo <ago <AT> gentoo.org>
sci-chemistry/dssp/dssp-2.2.1-r3.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-chemistry/dssp/dssp-2.2.1-r3.ebuild b/sci-chemistry/dssp/dssp-2.2.1-r3.ebuild
index 8697005fc2c..040e7bd31ff 100644
--- a/sci-chemistry/dssp/dssp-2.2.1-r3.ebuild
+++ b/sci-chemistry/dssp/dssp-2.2.1-r3.ebuild
@@ -11,7 +11,7 @@ SRC_URI="ftp://ftp.cmbi.ru.nl/pub/molbio/software/dssp-2/${P}.tgz"
LICENSE="Boost-1.0"
SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE=""
RDEPEND="dev-libs/boost:=[bzip2,zlib,threads(+)]"
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2021-10-05 6:48 Agostino Sarubbo
0 siblings, 0 replies; 38+ messages in thread
From: Agostino Sarubbo @ 2021-10-05 6:48 UTC (permalink / raw
To: gentoo-commits
commit: c6c03fc6b88d9c27f4caff82c45816392b729f75
Author: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Tue Oct 5 06:48:23 2021 +0000
Commit: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Tue Oct 5 06:48:23 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c6c03fc6
sci-chemistry/dssp: x86 stable wrt bug #816123
Package-Manager: Portage-3.0.20, Repoman-3.0.3
RepoMan-Options: --include-arches="x86"
Signed-off-by: Agostino Sarubbo <ago <AT> gentoo.org>
sci-chemistry/dssp/dssp-2.2.1-r3.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-chemistry/dssp/dssp-2.2.1-r3.ebuild b/sci-chemistry/dssp/dssp-2.2.1-r3.ebuild
index 040e7bd31ff..208f006e4f5 100644
--- a/sci-chemistry/dssp/dssp-2.2.1-r3.ebuild
+++ b/sci-chemistry/dssp/dssp-2.2.1-r3.ebuild
@@ -11,7 +11,7 @@ SRC_URI="ftp://ftp.cmbi.ru.nl/pub/molbio/software/dssp-2/${P}.tgz"
LICENSE="Boost-1.0"
SLOT="0"
-KEYWORDS="amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
IUSE=""
RDEPEND="dev-libs/boost:=[bzip2,zlib,threads(+)]"
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2021-10-10 20:48 Sam James
0 siblings, 0 replies; 38+ messages in thread
From: Sam James @ 2021-10-10 20:48 UTC (permalink / raw
To: gentoo-commits
commit: a17355be0a046e1dcdc5abac3ec821f88a904278
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Sun Oct 10 20:47:48 2021 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Sun Oct 10 20:47:48 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a17355be
sci-chemistry/dssp: Keyword 4.0.1_p20210831 x86, #811417
Signed-off-by: Sam James <sam <AT> gentoo.org>
sci-chemistry/dssp/dssp-4.0.1_p20210831.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-chemistry/dssp/dssp-4.0.1_p20210831.ebuild b/sci-chemistry/dssp/dssp-4.0.1_p20210831.ebuild
index a5e5af9c742..ca051ca5a0d 100644
--- a/sci-chemistry/dssp/dssp-4.0.1_p20210831.ebuild
+++ b/sci-chemistry/dssp/dssp-4.0.1_p20210831.ebuild
@@ -13,7 +13,7 @@ S="${WORKDIR}/${PN}-${COMMIT}"
LICENSE="BSD-2"
SLOT="0"
-KEYWORDS="~amd64"
+KEYWORDS="~amd64 ~x86"
IUSE=""
BDEPEND="
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2021-11-06 8:53 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2021-11-06 8:53 UTC (permalink / raw
To: gentoo-commits
commit: 73ffa274b37fea4fb561d68cbe1cb74d1294b9b8
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Sat Nov 6 08:07:48 2021 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Sat Nov 6 08:52:56 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=73ffa274
sci-chemistry/dssp: Drop old
Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/Manifest | 1 -
sci-chemistry/dssp/dssp-2.2.1-r2.ebuild | 45 --------------------------
sci-chemistry/dssp/dssp-4.0.1_p20210831.ebuild | 33 -------------------
3 files changed, 79 deletions(-)
diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest
index 9fd132f8a29..2eecf341c88 100644
--- a/sci-chemistry/dssp/Manifest
+++ b/sci-chemistry/dssp/Manifest
@@ -1,4 +1,3 @@
DIST dssp-2.2.1.tgz 47141 BLAKE2B 34d8b2db8797a8c23763766c0214337f03584c4be52c1bc820a0df0db6a5f78ac0229aafdd47a60b8fd6f4832abf0399663c53f9e898c75f08ecbe22b141c8da SHA512 4a273714d6b3230daea166caa7f4117d5ccb225bea0cf1bc2eb61539b6cc8e227d0ba19047d61f0ad0d1d6bc2efdec9c193bd44341e15ef0950acb4a22498811
DIST dssp-3.0.11.tar.gz 168085 BLAKE2B e1c42fd22cfb2287f10b5deae48b56a4583d4a67737a3485dcbd160d1597a15c2d5105c3794c875d8001abede1c014efb4f7f5b7c250f867bdf9ed95a0860217 SHA512 a0cfe44e517ff1f909ef2928b62ae2c639c6bddfd8a0fb538883f647fd2771e00da68e0fd2521aa02ba3c6d1b0c9b784b7fe142392af3a3abf6ea89f1546bd9d
-DIST dssp-4.0.1_p20210831.tar.gz 121793 BLAKE2B 1e028b086b418772a93db350f8084d1786996ff6ea935d236b1431d8f4a07c0b33ebf374a4c4d5d4d243952f3f56e29a548ce09763863a1e0c529755fba6c211 SHA512 62f1ac781dd3d6f3436e6c155ae1a470d0baf6a6d9f6d6729034a7a5ef41550f76d0473c688d235279336306c9f3598377c056cddd6d00a89a826fbb04c1bfb3
DIST dssp-4.0.3.tar.gz 122872 BLAKE2B f88c330370645b4bd4e89656ad676e443a33c38d7882145bc60e329f823eb761777713df6c7ae44550d10bcd22256ac16db358587cadd39efd6268dd869655d4 SHA512 31ca481b097c9c59f407e35eb8175638b5e4102991007090b5b4ea30db0b076f97cff45d0aa9ae01a826f7673258464b572d68714f00e210db26020cea4be094
diff --git a/sci-chemistry/dssp/dssp-2.2.1-r2.ebuild b/sci-chemistry/dssp/dssp-2.2.1-r2.ebuild
deleted file mode 100644
index 63075d4d429..00000000000
--- a/sci-chemistry/dssp/dssp-2.2.1-r2.ebuild
+++ /dev/null
@@ -1,45 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit toolchain-funcs
-
-DESCRIPTION="The protein secondary structure standard"
-HOMEPAGE="http://swift.cmbi.ru.nl/gv/dssp/"
-SRC_URI="ftp://ftp.cmbi.ru.nl/pub/molbio/software/dssp-2/${P}.tgz"
-
-LICENSE="Boost-1.0"
-SLOT="0"
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="dev-libs/boost:=[threads(+)]"
-DEPEND="${RDEPEND}"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-2.1.0-gentoo.patch
- "${FILESDIR}"/${PN}-2.2.1-boost-1.65-tr1-removal.patch
-)
-
-src_configure() {
- tc-export CXX
-
- cat >> make.config <<- EOF || die
- BOOST_LIB_SUFFIX = -mt
- BOOST_LIB_DIR = "${EPREFIX}/usr/$(get_libdir)"
- BOOST_INC_DIR = "${EPREFIX}/usr/include"
- EOF
-}
-
-src_install() {
- dobin mkdssp
- dosym mkdssp /usr/bin/dssp
- doman doc/mkdssp.1
- dodoc README.txt changelog
-
- cat >> "${T}"/30-${PN} <<- EOF || die
- DSSP="${EPREFIX}"/usr/bin/${PN}
- EOF
- doenvd "${T}"/30-${PN}
-}
diff --git a/sci-chemistry/dssp/dssp-4.0.1_p20210831.ebuild b/sci-chemistry/dssp/dssp-4.0.1_p20210831.ebuild
deleted file mode 100644
index ca051ca5a0d..00000000000
--- a/sci-chemistry/dssp/dssp-4.0.1_p20210831.ebuild
+++ /dev/null
@@ -1,33 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-inherit cmake
-
-DESCRIPTION="The protein secondary structure standard"
-HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/PDB-REDO/dssp"
-
-COMMIT="728cc7c6c8d95460d8db453cf7adb25a89ba15f6"
-SRC_URI="https://github.com/PDB-REDO/${PN}/archive/${COMMIT}.tar.gz -> ${P}.tar.gz"
-S="${WORKDIR}/${PN}-${COMMIT}"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-BDEPEND="
- >=dev-libs/boost-1.70.0:=[bzip2,zlib,threads(+)]
- >=sci-libs/libcifpp-1.1.1
-"
-DEPEND=""
-RDEPEND="${BDEPEND}"
-
-pkg_postinst() {
- if has_version sci-chemistry/gromacs; then
- ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:"
- ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129"
- ewarn
- ewarn "Feel free to mask newer versions if needed."
- fi
-}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2021-11-06 8:53 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2021-11-06 8:53 UTC (permalink / raw
To: gentoo-commits
commit: c2a04400a8881f2c599fe6aaf09769b3787ea541
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Sat Nov 6 08:07:20 2021 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Sat Nov 6 08:52:55 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c2a04400
sci-chemistry/dssp: gromacs-2022 will support dssp-4
Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/dssp-4.0.3.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-chemistry/dssp/dssp-4.0.3.ebuild b/sci-chemistry/dssp/dssp-4.0.3.ebuild
index d9d8a5740c8..31f86f7e3cf 100644
--- a/sci-chemistry/dssp/dssp-4.0.3.ebuild
+++ b/sci-chemistry/dssp/dssp-4.0.3.ebuild
@@ -22,7 +22,7 @@ DEPEND=""
RDEPEND="${BDEPEND}"
pkg_postinst() {
- if has_version sci-chemistry/gromacs; then
+ if has_version "<=sci-chemistry/gromacs-2022"; then
ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:"
ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129"
ewarn
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2021-11-16 3:14 Sam James
0 siblings, 0 replies; 38+ messages in thread
From: Sam James @ 2021-11-16 3:14 UTC (permalink / raw
To: gentoo-commits
commit: f2e7ecee7f1b69e02a11e242f2efbcb2df46bd33
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Tue Nov 16 03:12:37 2021 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Tue Nov 16 03:12:37 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f2e7ecee
sci-chemistry/dssp: don't run useless (for downstream) cppcheck test
It's not useful for us to determine if the package is working
correctly so skip it.
Closes: https://bugs.gentoo.org/823894
Signed-off-by: Sam James <sam <AT> gentoo.org>
sci-chemistry/dssp/dssp-3.0.11.ebuild | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/sci-chemistry/dssp/dssp-3.0.11.ebuild b/sci-chemistry/dssp/dssp-3.0.11.ebuild
index b0771e31047d..f18a72f38a94 100644
--- a/sci-chemistry/dssp/dssp-3.0.11.ebuild
+++ b/sci-chemistry/dssp/dssp-3.0.11.ebuild
@@ -14,7 +14,8 @@ SRC_URI="https://github.com/cmbi/${MY_PN}/archive/refs/tags/${PV}.tar.gz -> ${P}
LICENSE="Boost-1.0"
SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
+# It's just cppcheck (at least in 3.0.11)
+RESTRICT="test"
RDEPEND="
dev-lang/perl:=
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2021-11-16 7:50 Agostino Sarubbo
0 siblings, 0 replies; 38+ messages in thread
From: Agostino Sarubbo @ 2021-11-16 7:50 UTC (permalink / raw
To: gentoo-commits
commit: 5c812d47da1f173868631dec0bad92d57cc8f474
Author: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Tue Nov 16 07:50:36 2021 +0000
Commit: Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Tue Nov 16 07:50:36 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5c812d47
sci-chemistry/dssp: x86 stable wrt bug #823826
Package-Manager: Portage-3.0.20, Repoman-3.0.3
RepoMan-Options: --include-arches="x86"
Signed-off-by: Agostino Sarubbo <ago <AT> gentoo.org>
sci-chemistry/dssp/dssp-3.0.11.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-chemistry/dssp/dssp-3.0.11.ebuild b/sci-chemistry/dssp/dssp-3.0.11.ebuild
index f18a72f38a94..6df25cdeced6 100644
--- a/sci-chemistry/dssp/dssp-3.0.11.ebuild
+++ b/sci-chemistry/dssp/dssp-3.0.11.ebuild
@@ -13,7 +13,7 @@ SRC_URI="https://github.com/cmbi/${MY_PN}/archive/refs/tags/${PV}.tar.gz -> ${P}
LICENSE="Boost-1.0"
SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~amd64 x86 ~amd64-linux ~x86-linux"
# It's just cppcheck (at least in 3.0.11)
RESTRICT="test"
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2021-11-16 10:08 Jakov Smolić
0 siblings, 0 replies; 38+ messages in thread
From: Jakov Smolić @ 2021-11-16 10:08 UTC (permalink / raw
To: gentoo-commits
commit: f8dcbf609265a67a9511afedee734f48b2c3e52a
Author: Jakov Smolić <jsmolic <AT> gentoo <DOT> org>
AuthorDate: Tue Nov 16 10:08:01 2021 +0000
Commit: Jakov Smolić <jsmolic <AT> gentoo <DOT> org>
CommitDate: Tue Nov 16 10:08:01 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f8dcbf60
sci-chemistry/dssp: Stabilize 3.0.11 amd64, #823826
Signed-off-by: Jakov Smolić <jsmolic <AT> gentoo.org>
sci-chemistry/dssp/dssp-3.0.11.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-chemistry/dssp/dssp-3.0.11.ebuild b/sci-chemistry/dssp/dssp-3.0.11.ebuild
index 6df25cdeced6..002c7d491d18 100644
--- a/sci-chemistry/dssp/dssp-3.0.11.ebuild
+++ b/sci-chemistry/dssp/dssp-3.0.11.ebuild
@@ -13,7 +13,7 @@ SRC_URI="https://github.com/cmbi/${MY_PN}/archive/refs/tags/${PV}.tar.gz -> ${P}
LICENSE="Boost-1.0"
SLOT="0"
-KEYWORDS="~amd64 x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
# It's just cppcheck (at least in 3.0.11)
RESTRICT="test"
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2022-03-13 18:36 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2022-03-13 18:36 UTC (permalink / raw
To: gentoo-commits
commit: 55c361837ab6af4c0a43d9515c2e8e7f96102d89
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Sun Mar 13 18:32:12 2022 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Sun Mar 13 18:36:36 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=55c36183
sci-chemistry/dssp: Bump to 4.0.4
Closes: https://bugs.gentoo.org/834882
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/Manifest | 1 +
sci-chemistry/dssp/dssp-4.0.4.ebuild | 31 +++++++++++++++++++++++++++++++
2 files changed, 32 insertions(+)
diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest
index 2eecf341c882..3fd55461432a 100644
--- a/sci-chemistry/dssp/Manifest
+++ b/sci-chemistry/dssp/Manifest
@@ -1,3 +1,4 @@
DIST dssp-2.2.1.tgz 47141 BLAKE2B 34d8b2db8797a8c23763766c0214337f03584c4be52c1bc820a0df0db6a5f78ac0229aafdd47a60b8fd6f4832abf0399663c53f9e898c75f08ecbe22b141c8da SHA512 4a273714d6b3230daea166caa7f4117d5ccb225bea0cf1bc2eb61539b6cc8e227d0ba19047d61f0ad0d1d6bc2efdec9c193bd44341e15ef0950acb4a22498811
DIST dssp-3.0.11.tar.gz 168085 BLAKE2B e1c42fd22cfb2287f10b5deae48b56a4583d4a67737a3485dcbd160d1597a15c2d5105c3794c875d8001abede1c014efb4f7f5b7c250f867bdf9ed95a0860217 SHA512 a0cfe44e517ff1f909ef2928b62ae2c639c6bddfd8a0fb538883f647fd2771e00da68e0fd2521aa02ba3c6d1b0c9b784b7fe142392af3a3abf6ea89f1546bd9d
DIST dssp-4.0.3.tar.gz 122872 BLAKE2B f88c330370645b4bd4e89656ad676e443a33c38d7882145bc60e329f823eb761777713df6c7ae44550d10bcd22256ac16db358587cadd39efd6268dd869655d4 SHA512 31ca481b097c9c59f407e35eb8175638b5e4102991007090b5b4ea30db0b076f97cff45d0aa9ae01a826f7673258464b572d68714f00e210db26020cea4be094
+DIST dssp-4.0.4.tar.gz 122183 BLAKE2B b12702c482ad58f09d96e9c85759ebe9455961978277e25d1ee554d07a643b342acf2dbcd3c18d539f058b970c24888a43827b6bac47899ca61bf96dd0c2723b SHA512 e0646bb20f10617174b0970c549fd44990750f46f7a550e4c3bc89487a8d3b7a175d53b2abb0684f9d96203a23d64ae67c6c10688fd4f5f59ff19995f9149ef8
diff --git a/sci-chemistry/dssp/dssp-4.0.4.ebuild b/sci-chemistry/dssp/dssp-4.0.4.ebuild
new file mode 100644
index 000000000000..bc27c568c321
--- /dev/null
+++ b/sci-chemistry/dssp/dssp-4.0.4.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="The protein secondary structure standard"
+HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/PDB-REDO/dssp"
+
+SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+BDEPEND="
+ >=dev-libs/boost-1.70.0:=[zlib,threads(+)]
+ >=sci-libs/libcifpp-2.0.0
+"
+DEPEND=""
+RDEPEND="${BDEPEND}"
+
+pkg_postinst() {
+ if has_version "<=sci-chemistry/gromacs-2022"; then
+ ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:"
+ ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129"
+ ewarn
+ ewarn "Feel free to mask newer versions if needed."
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2022-03-17 13:36 Jakov Smolić
0 siblings, 0 replies; 38+ messages in thread
From: Jakov Smolić @ 2022-03-17 13:36 UTC (permalink / raw
To: gentoo-commits
commit: f289b8c253aa73634be785af929cbe4d3677d88c
Author: Jakov Smolić <jsmolic <AT> gentoo <DOT> org>
AuthorDate: Thu Mar 17 13:36:26 2022 +0000
Commit: Jakov Smolić <jsmolic <AT> gentoo <DOT> org>
CommitDate: Thu Mar 17 13:36:26 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f289b8c2
sci-chemistry/dssp: Keyword 4.0.4 x86, #834864
Signed-off-by: Jakov Smolić <jsmolic <AT> gentoo.org>
sci-chemistry/dssp/dssp-4.0.4.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-chemistry/dssp/dssp-4.0.4.ebuild b/sci-chemistry/dssp/dssp-4.0.4.ebuild
index bc27c568c321..5fe497f48e02 100644
--- a/sci-chemistry/dssp/dssp-4.0.4.ebuild
+++ b/sci-chemistry/dssp/dssp-4.0.4.ebuild
@@ -11,7 +11,7 @@ SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/${PV}.tar.gz -> ${P
LICENSE="BSD-2"
SLOT="0"
-KEYWORDS="~amd64"
+KEYWORDS="~amd64 ~x86"
IUSE=""
BDEPEND="
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2022-06-02 4:03 Sam James
0 siblings, 0 replies; 38+ messages in thread
From: Sam James @ 2022-06-02 4:03 UTC (permalink / raw
To: gentoo-commits
commit: 0acad7810d68284f4e20d2161366b3e6bf66fe7f
Author: Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Thu Jun 2 04:03:16 2022 +0000
Commit: Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Thu Jun 2 04:03:16 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0acad781
sci-chemistry/dssp: Keyword 3.0.11 arm, #834865
Signed-off-by: Sam James <sam <AT> gentoo.org>
sci-chemistry/dssp/dssp-3.0.11.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-chemistry/dssp/dssp-3.0.11.ebuild b/sci-chemistry/dssp/dssp-3.0.11.ebuild
index 002c7d491d18..6c96c618667b 100644
--- a/sci-chemistry/dssp/dssp-3.0.11.ebuild
+++ b/sci-chemistry/dssp/dssp-3.0.11.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
@@ -13,7 +13,7 @@ SRC_URI="https://github.com/cmbi/${MY_PN}/archive/refs/tags/${PV}.tar.gz -> ${P}
LICENSE="Boost-1.0"
SLOT="0"
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~arm x86 ~amd64-linux ~x86-linux"
# It's just cppcheck (at least in 3.0.11)
RESTRICT="test"
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2022-07-06 5:18 Arthur Zamarin
0 siblings, 0 replies; 38+ messages in thread
From: Arthur Zamarin @ 2022-07-06 5:18 UTC (permalink / raw
To: gentoo-commits
commit: f6f742def37526a585a364c6e9117d0ec901369c
Author: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
AuthorDate: Wed Jul 6 05:17:52 2022 +0000
Commit: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
CommitDate: Wed Jul 6 05:17:52 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f6f742de
sci-chemistry/dssp: Keyword 3.0.11 arm64, #856388
Signed-off-by: Arthur Zamarin <arthurzam <AT> gentoo.org>
sci-chemistry/dssp/dssp-3.0.11.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-chemistry/dssp/dssp-3.0.11.ebuild b/sci-chemistry/dssp/dssp-3.0.11.ebuild
index 6c96c618667b..c072fd95aebc 100644
--- a/sci-chemistry/dssp/dssp-3.0.11.ebuild
+++ b/sci-chemistry/dssp/dssp-3.0.11.ebuild
@@ -13,7 +13,7 @@ SRC_URI="https://github.com/cmbi/${MY_PN}/archive/refs/tags/${PV}.tar.gz -> ${P}
LICENSE="Boost-1.0"
SLOT="0"
-KEYWORDS="amd64 ~arm x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~arm ~arm64 x86 ~amd64-linux ~x86-linux"
# It's just cppcheck (at least in 3.0.11)
RESTRICT="test"
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2022-09-04 12:23 David Seifert
0 siblings, 0 replies; 38+ messages in thread
From: David Seifert @ 2022-09-04 12:23 UTC (permalink / raw
To: gentoo-commits
commit: 47f68efe19de54b1dc1500bd183fe6a2f9dfa1aa
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Sep 4 12:22:29 2022 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Sep 4 12:22:29 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=47f68efe
sci-chemistry/dssp: remove boost[threads(+)] usedep
Signed-off-by: David Seifert <soap <AT> gentoo.org>
sci-chemistry/dssp/dssp-2.2.1-r3.ebuild | 4 ++--
sci-chemistry/dssp/dssp-3.0.11.ebuild | 2 +-
sci-chemistry/dssp/dssp-4.0.3.ebuild | 4 ++--
sci-chemistry/dssp/dssp-4.0.4.ebuild | 2 +-
4 files changed, 6 insertions(+), 6 deletions(-)
diff --git a/sci-chemistry/dssp/dssp-2.2.1-r3.ebuild b/sci-chemistry/dssp/dssp-2.2.1-r3.ebuild
index 208f006e4f5b..bbb138f6dbc2 100644
--- a/sci-chemistry/dssp/dssp-2.2.1-r3.ebuild
+++ b/sci-chemistry/dssp/dssp-2.2.1-r3.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
@@ -14,7 +14,7 @@ SLOT="0"
KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
IUSE=""
-RDEPEND="dev-libs/boost:=[bzip2,zlib,threads(+)]"
+RDEPEND="dev-libs/boost:=[bzip2,zlib]"
DEPEND="${RDEPEND}"
PATCHES=(
diff --git a/sci-chemistry/dssp/dssp-3.0.11.ebuild b/sci-chemistry/dssp/dssp-3.0.11.ebuild
index c072fd95aebc..8c0852ec98ff 100644
--- a/sci-chemistry/dssp/dssp-3.0.11.ebuild
+++ b/sci-chemistry/dssp/dssp-3.0.11.ebuild
@@ -19,7 +19,7 @@ RESTRICT="test"
RDEPEND="
dev-lang/perl:=
- dev-libs/boost:=[bzip2,zlib,threads(+)]
+ dev-libs/boost:=[bzip2,zlib]
"
DEPEND="${RDEPEND}"
diff --git a/sci-chemistry/dssp/dssp-4.0.3.ebuild b/sci-chemistry/dssp/dssp-4.0.3.ebuild
index 31f86f7e3cf4..812efe35b9e9 100644
--- a/sci-chemistry/dssp/dssp-4.0.3.ebuild
+++ b/sci-chemistry/dssp/dssp-4.0.3.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -15,7 +15,7 @@ KEYWORDS="~amd64"
IUSE=""
BDEPEND="
- >=dev-libs/boost-1.70.0:=[zlib,threads(+)]
+ >=dev-libs/boost-1.70.0:=[zlib]
>=sci-libs/libcifpp-2.0.0
"
DEPEND=""
diff --git a/sci-chemistry/dssp/dssp-4.0.4.ebuild b/sci-chemistry/dssp/dssp-4.0.4.ebuild
index 5fe497f48e02..fab19ceb9f6f 100644
--- a/sci-chemistry/dssp/dssp-4.0.4.ebuild
+++ b/sci-chemistry/dssp/dssp-4.0.4.ebuild
@@ -15,7 +15,7 @@ KEYWORDS="~amd64 ~x86"
IUSE=""
BDEPEND="
- >=dev-libs/boost-1.70.0:=[zlib,threads(+)]
+ >=dev-libs/boost-1.70.0:=[zlib]
>=sci-libs/libcifpp-2.0.0
"
DEPEND=""
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2022-09-04 13:03 David Seifert
0 siblings, 0 replies; 38+ messages in thread
From: David Seifert @ 2022-09-04 13:03 UTC (permalink / raw
To: gentoo-commits
commit: 2b374ca27f77790398d2e8832fd64fcca66eadef
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Sep 4 13:03:26 2022 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Sep 4 13:03:26 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=2b374ca2
sci-chemistry/dssp: remove stale boost lower bounds
Signed-off-by: David Seifert <soap <AT> gentoo.org>
sci-chemistry/dssp/dssp-4.0.3.ebuild | 2 +-
sci-chemistry/dssp/dssp-4.0.4.ebuild | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-chemistry/dssp/dssp-4.0.3.ebuild b/sci-chemistry/dssp/dssp-4.0.3.ebuild
index 812efe35b9e9..ab80314db053 100644
--- a/sci-chemistry/dssp/dssp-4.0.3.ebuild
+++ b/sci-chemistry/dssp/dssp-4.0.3.ebuild
@@ -15,7 +15,7 @@ KEYWORDS="~amd64"
IUSE=""
BDEPEND="
- >=dev-libs/boost-1.70.0:=[zlib]
+ dev-libs/boost:=[zlib]
>=sci-libs/libcifpp-2.0.0
"
DEPEND=""
diff --git a/sci-chemistry/dssp/dssp-4.0.4.ebuild b/sci-chemistry/dssp/dssp-4.0.4.ebuild
index fab19ceb9f6f..756e23958f93 100644
--- a/sci-chemistry/dssp/dssp-4.0.4.ebuild
+++ b/sci-chemistry/dssp/dssp-4.0.4.ebuild
@@ -15,7 +15,7 @@ KEYWORDS="~amd64 ~x86"
IUSE=""
BDEPEND="
- >=dev-libs/boost-1.70.0:=[zlib]
+ dev-libs/boost:=[zlib]
>=sci-libs/libcifpp-2.0.0
"
DEPEND=""
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2022-12-04 14:50 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2022-12-04 14:50 UTC (permalink / raw
To: gentoo-commits
commit: 93c67589ff500a85c34af6f4f16ee0e3694b4530
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Sun Dec 4 14:00:22 2022 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Sun Dec 4 14:49:19 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=93c67589
sci-chemistry/dssp: add 4.2.0
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/Manifest | 1 +
sci-chemistry/dssp/dssp-4.2.0.ebuild | 31 +++++++++++++++++++++++++++++++
2 files changed, 32 insertions(+)
diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest
index 3fd55461432a..0dd96b30e667 100644
--- a/sci-chemistry/dssp/Manifest
+++ b/sci-chemistry/dssp/Manifest
@@ -2,3 +2,4 @@ DIST dssp-2.2.1.tgz 47141 BLAKE2B 34d8b2db8797a8c23763766c0214337f03584c4be52c1b
DIST dssp-3.0.11.tar.gz 168085 BLAKE2B e1c42fd22cfb2287f10b5deae48b56a4583d4a67737a3485dcbd160d1597a15c2d5105c3794c875d8001abede1c014efb4f7f5b7c250f867bdf9ed95a0860217 SHA512 a0cfe44e517ff1f909ef2928b62ae2c639c6bddfd8a0fb538883f647fd2771e00da68e0fd2521aa02ba3c6d1b0c9b784b7fe142392af3a3abf6ea89f1546bd9d
DIST dssp-4.0.3.tar.gz 122872 BLAKE2B f88c330370645b4bd4e89656ad676e443a33c38d7882145bc60e329f823eb761777713df6c7ae44550d10bcd22256ac16db358587cadd39efd6268dd869655d4 SHA512 31ca481b097c9c59f407e35eb8175638b5e4102991007090b5b4ea30db0b076f97cff45d0aa9ae01a826f7673258464b572d68714f00e210db26020cea4be094
DIST dssp-4.0.4.tar.gz 122183 BLAKE2B b12702c482ad58f09d96e9c85759ebe9455961978277e25d1ee554d07a643b342acf2dbcd3c18d539f058b970c24888a43827b6bac47899ca61bf96dd0c2723b SHA512 e0646bb20f10617174b0970c549fd44990750f46f7a550e4c3bc89487a8d3b7a175d53b2abb0684f9d96203a23d64ae67c6c10688fd4f5f59ff19995f9149ef8
+DIST dssp-4.2.0.tar.gz 157104 BLAKE2B 4caffb5f7cfe2a130e3ac6c5efa41689bbbb8ee054333cd4320cf77ac36dccaa128fe816ca57b6bd287271924122de4252076628098db415c854df6f09c17ac2 SHA512 b86c736ea9fdf62be923f8a69bae56f7298cd01e6623c1f3eee6951e20483d24438b1318924e980b6a98b19c77cb84d4ba66260a575b63e7c536ecba0478c4a5
diff --git a/sci-chemistry/dssp/dssp-4.2.0.ebuild b/sci-chemistry/dssp/dssp-4.2.0.ebuild
new file mode 100644
index 000000000000..2aa19298ec94
--- /dev/null
+++ b/sci-chemistry/dssp/dssp-4.2.0.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="The protein secondary structure standard"
+HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/PDB-REDO/dssp"
+SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+BDEPEND="
+ dev-libs/boost:=[zlib]
+ >=dev-libs/libmcfp-1.2.2
+ >=sci-libs/libcifpp-5.0.4
+"
+DEPEND=""
+RDEPEND="${BDEPEND}"
+
+pkg_postinst() {
+ if has_version "<=sci-chemistry/gromacs-2022"; then
+ ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:"
+ ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129"
+ ewarn
+ ewarn "Feel free to mask newer versions if needed."
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2022-12-04 14:50 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2022-12-04 14:50 UTC (permalink / raw
To: gentoo-commits
commit: aa62e6a636e2faa63ca4b428de2283f45af64d37
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Sun Dec 4 14:02:28 2022 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Sun Dec 4 14:49:19 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=aa62e6a6
sci-chemistry/dssp: add github upstream metadata
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/metadata.xml | 3 +++
1 file changed, 3 insertions(+)
diff --git a/sci-chemistry/dssp/metadata.xml b/sci-chemistry/dssp/metadata.xml
index 572c7daf2ccf..e3c02bf1bb6f 100644
--- a/sci-chemistry/dssp/metadata.xml
+++ b/sci-chemistry/dssp/metadata.xml
@@ -4,4 +4,7 @@
<maintainer type="person">
<email>pacho@gentoo.org</email>
</maintainer>
+ <upstream>
+ <remote-id type="github">PDB-REDO/dssp</remote-id>
+ </upstream>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2022-12-05 20:17 Arthur Zamarin
0 siblings, 0 replies; 38+ messages in thread
From: Arthur Zamarin @ 2022-12-05 20:17 UTC (permalink / raw
To: gentoo-commits
commit: a5a5e8efdf1d275cbad80b6a23ff71e6869c0061
Author: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
AuthorDate: Mon Dec 5 20:17:30 2022 +0000
Commit: Arthur Zamarin <arthurzam <AT> gentoo <DOT> org>
CommitDate: Mon Dec 5 20:17:30 2022 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a5a5e8ef
sci-chemistry/dssp: Keyword 4.2.0 x86, #884313
Signed-off-by: Arthur Zamarin <arthurzam <AT> gentoo.org>
sci-chemistry/dssp/dssp-4.2.0.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-chemistry/dssp/dssp-4.2.0.ebuild b/sci-chemistry/dssp/dssp-4.2.0.ebuild
index 2aa19298ec94..3aa043cf45af 100644
--- a/sci-chemistry/dssp/dssp-4.2.0.ebuild
+++ b/sci-chemistry/dssp/dssp-4.2.0.ebuild
@@ -10,7 +10,7 @@ SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${
LICENSE="BSD-2"
SLOT="0"
-KEYWORDS="~amd64"
+KEYWORDS="~amd64 ~x86"
IUSE=""
BDEPEND="
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2023-01-02 14:04 Andreas Sturmlechner
0 siblings, 0 replies; 38+ messages in thread
From: Andreas Sturmlechner @ 2023-01-02 14:04 UTC (permalink / raw
To: gentoo-commits
commit: 666c5b76ea7ac62abc7cb2c90f0e090e6565980a
Author: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
AuthorDate: Sun Dec 25 22:55:50 2022 +0000
Commit: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
CommitDate: Mon Jan 2 14:03:56 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=666c5b76
sci-chemistry/dssp: drop 4.0.3
Signed-off-by: Andreas Sturmlechner <asturm <AT> gentoo.org>
sci-chemistry/dssp/Manifest | 1 -
sci-chemistry/dssp/dssp-4.0.3.ebuild | 31 -------------------------------
2 files changed, 32 deletions(-)
diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest
index 0dd96b30e667..adb164c9b6da 100644
--- a/sci-chemistry/dssp/Manifest
+++ b/sci-chemistry/dssp/Manifest
@@ -1,5 +1,4 @@
DIST dssp-2.2.1.tgz 47141 BLAKE2B 34d8b2db8797a8c23763766c0214337f03584c4be52c1bc820a0df0db6a5f78ac0229aafdd47a60b8fd6f4832abf0399663c53f9e898c75f08ecbe22b141c8da SHA512 4a273714d6b3230daea166caa7f4117d5ccb225bea0cf1bc2eb61539b6cc8e227d0ba19047d61f0ad0d1d6bc2efdec9c193bd44341e15ef0950acb4a22498811
DIST dssp-3.0.11.tar.gz 168085 BLAKE2B e1c42fd22cfb2287f10b5deae48b56a4583d4a67737a3485dcbd160d1597a15c2d5105c3794c875d8001abede1c014efb4f7f5b7c250f867bdf9ed95a0860217 SHA512 a0cfe44e517ff1f909ef2928b62ae2c639c6bddfd8a0fb538883f647fd2771e00da68e0fd2521aa02ba3c6d1b0c9b784b7fe142392af3a3abf6ea89f1546bd9d
-DIST dssp-4.0.3.tar.gz 122872 BLAKE2B f88c330370645b4bd4e89656ad676e443a33c38d7882145bc60e329f823eb761777713df6c7ae44550d10bcd22256ac16db358587cadd39efd6268dd869655d4 SHA512 31ca481b097c9c59f407e35eb8175638b5e4102991007090b5b4ea30db0b076f97cff45d0aa9ae01a826f7673258464b572d68714f00e210db26020cea4be094
DIST dssp-4.0.4.tar.gz 122183 BLAKE2B b12702c482ad58f09d96e9c85759ebe9455961978277e25d1ee554d07a643b342acf2dbcd3c18d539f058b970c24888a43827b6bac47899ca61bf96dd0c2723b SHA512 e0646bb20f10617174b0970c549fd44990750f46f7a550e4c3bc89487a8d3b7a175d53b2abb0684f9d96203a23d64ae67c6c10688fd4f5f59ff19995f9149ef8
DIST dssp-4.2.0.tar.gz 157104 BLAKE2B 4caffb5f7cfe2a130e3ac6c5efa41689bbbb8ee054333cd4320cf77ac36dccaa128fe816ca57b6bd287271924122de4252076628098db415c854df6f09c17ac2 SHA512 b86c736ea9fdf62be923f8a69bae56f7298cd01e6623c1f3eee6951e20483d24438b1318924e980b6a98b19c77cb84d4ba66260a575b63e7c536ecba0478c4a5
diff --git a/sci-chemistry/dssp/dssp-4.0.3.ebuild b/sci-chemistry/dssp/dssp-4.0.3.ebuild
deleted file mode 100644
index ab80314db053..000000000000
--- a/sci-chemistry/dssp/dssp-4.0.3.ebuild
+++ /dev/null
@@ -1,31 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-inherit cmake
-
-DESCRIPTION="The protein secondary structure standard"
-HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/PDB-REDO/dssp"
-
-SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-BDEPEND="
- dev-libs/boost:=[zlib]
- >=sci-libs/libcifpp-2.0.0
-"
-DEPEND=""
-RDEPEND="${BDEPEND}"
-
-pkg_postinst() {
- if has_version "<=sci-chemistry/gromacs-2022"; then
- ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:"
- ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129"
- ewarn
- ewarn "Feel free to mask newer versions if needed."
- fi
-}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2023-02-26 15:51 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2023-02-26 15:51 UTC (permalink / raw
To: gentoo-commits
commit: 717d2f5faff75dfb343da5fc8d7bd6091a67342c
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Sun Feb 26 15:51:19 2023 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Sun Feb 26 15:51:33 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=717d2f5f
sci-chemistry/dssp: drop 4.0.4
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/Manifest | 1 -
sci-chemistry/dssp/dssp-4.0.4.ebuild | 31 -------------------------------
2 files changed, 32 deletions(-)
diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest
index e98a71770449..8f5d275bf005 100644
--- a/sci-chemistry/dssp/Manifest
+++ b/sci-chemistry/dssp/Manifest
@@ -1,5 +1,4 @@
DIST dssp-2.2.1.tgz 47141 BLAKE2B 34d8b2db8797a8c23763766c0214337f03584c4be52c1bc820a0df0db6a5f78ac0229aafdd47a60b8fd6f4832abf0399663c53f9e898c75f08ecbe22b141c8da SHA512 4a273714d6b3230daea166caa7f4117d5ccb225bea0cf1bc2eb61539b6cc8e227d0ba19047d61f0ad0d1d6bc2efdec9c193bd44341e15ef0950acb4a22498811
DIST dssp-3.0.11.tar.gz 168085 BLAKE2B e1c42fd22cfb2287f10b5deae48b56a4583d4a67737a3485dcbd160d1597a15c2d5105c3794c875d8001abede1c014efb4f7f5b7c250f867bdf9ed95a0860217 SHA512 a0cfe44e517ff1f909ef2928b62ae2c639c6bddfd8a0fb538883f647fd2771e00da68e0fd2521aa02ba3c6d1b0c9b784b7fe142392af3a3abf6ea89f1546bd9d
-DIST dssp-4.0.4.tar.gz 122183 BLAKE2B b12702c482ad58f09d96e9c85759ebe9455961978277e25d1ee554d07a643b342acf2dbcd3c18d539f058b970c24888a43827b6bac47899ca61bf96dd0c2723b SHA512 e0646bb20f10617174b0970c549fd44990750f46f7a550e4c3bc89487a8d3b7a175d53b2abb0684f9d96203a23d64ae67c6c10688fd4f5f59ff19995f9149ef8
DIST dssp-4.2.0.tar.gz 157104 BLAKE2B 4caffb5f7cfe2a130e3ac6c5efa41689bbbb8ee054333cd4320cf77ac36dccaa128fe816ca57b6bd287271924122de4252076628098db415c854df6f09c17ac2 SHA512 b86c736ea9fdf62be923f8a69bae56f7298cd01e6623c1f3eee6951e20483d24438b1318924e980b6a98b19c77cb84d4ba66260a575b63e7c536ecba0478c4a5
DIST dssp-4.2.2.1.tar.gz 144413 BLAKE2B 97c587bc0b4ef3d212ae81d568f817aab54f1dd2a77d170746e9b0d3f1bd63873d21fb0a7fc38c0300fc091f21241820d5d009d42a9e3e33dcc608c046185d9f SHA512 6daa41aea766940bf40afaee068daef341a7f79cae79d967b8da00e7002bdb602deaed40e452a5f0cea9aa2041a5c8678dfcae2e0f595cc5a0856392162dcdff
diff --git a/sci-chemistry/dssp/dssp-4.0.4.ebuild b/sci-chemistry/dssp/dssp-4.0.4.ebuild
deleted file mode 100644
index 756e23958f93..000000000000
--- a/sci-chemistry/dssp/dssp-4.0.4.ebuild
+++ /dev/null
@@ -1,31 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-inherit cmake
-
-DESCRIPTION="The protein secondary structure standard"
-HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/PDB-REDO/dssp"
-
-SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-BDEPEND="
- dev-libs/boost:=[zlib]
- >=sci-libs/libcifpp-2.0.0
-"
-DEPEND=""
-RDEPEND="${BDEPEND}"
-
-pkg_postinst() {
- if has_version "<=sci-chemistry/gromacs-2022"; then
- ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:"
- ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129"
- ewarn
- ewarn "Feel free to mask newer versions if needed."
- fi
-}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2023-02-26 15:51 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2023-02-26 15:51 UTC (permalink / raw
To: gentoo-commits
commit: 266ba3510001630233931bb9bd9dae60a233658a
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Sun Feb 26 15:50:20 2023 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Sun Feb 26 15:51:33 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=266ba351
sci-chemistry/dssp: add 4.2.2.1
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/Manifest | 1 +
sci-chemistry/dssp/dssp-4.2.2.1.ebuild | 31 +++++++++++++++++++++++++++++++
2 files changed, 32 insertions(+)
diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest
index adb164c9b6da..e98a71770449 100644
--- a/sci-chemistry/dssp/Manifest
+++ b/sci-chemistry/dssp/Manifest
@@ -2,3 +2,4 @@ DIST dssp-2.2.1.tgz 47141 BLAKE2B 34d8b2db8797a8c23763766c0214337f03584c4be52c1b
DIST dssp-3.0.11.tar.gz 168085 BLAKE2B e1c42fd22cfb2287f10b5deae48b56a4583d4a67737a3485dcbd160d1597a15c2d5105c3794c875d8001abede1c014efb4f7f5b7c250f867bdf9ed95a0860217 SHA512 a0cfe44e517ff1f909ef2928b62ae2c639c6bddfd8a0fb538883f647fd2771e00da68e0fd2521aa02ba3c6d1b0c9b784b7fe142392af3a3abf6ea89f1546bd9d
DIST dssp-4.0.4.tar.gz 122183 BLAKE2B b12702c482ad58f09d96e9c85759ebe9455961978277e25d1ee554d07a643b342acf2dbcd3c18d539f058b970c24888a43827b6bac47899ca61bf96dd0c2723b SHA512 e0646bb20f10617174b0970c549fd44990750f46f7a550e4c3bc89487a8d3b7a175d53b2abb0684f9d96203a23d64ae67c6c10688fd4f5f59ff19995f9149ef8
DIST dssp-4.2.0.tar.gz 157104 BLAKE2B 4caffb5f7cfe2a130e3ac6c5efa41689bbbb8ee054333cd4320cf77ac36dccaa128fe816ca57b6bd287271924122de4252076628098db415c854df6f09c17ac2 SHA512 b86c736ea9fdf62be923f8a69bae56f7298cd01e6623c1f3eee6951e20483d24438b1318924e980b6a98b19c77cb84d4ba66260a575b63e7c536ecba0478c4a5
+DIST dssp-4.2.2.1.tar.gz 144413 BLAKE2B 97c587bc0b4ef3d212ae81d568f817aab54f1dd2a77d170746e9b0d3f1bd63873d21fb0a7fc38c0300fc091f21241820d5d009d42a9e3e33dcc608c046185d9f SHA512 6daa41aea766940bf40afaee068daef341a7f79cae79d967b8da00e7002bdb602deaed40e452a5f0cea9aa2041a5c8678dfcae2e0f595cc5a0856392162dcdff
diff --git a/sci-chemistry/dssp/dssp-4.2.2.1.ebuild b/sci-chemistry/dssp/dssp-4.2.2.1.ebuild
new file mode 100644
index 000000000000..32167a786c22
--- /dev/null
+++ b/sci-chemistry/dssp/dssp-4.2.2.1.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="The protein secondary structure standard"
+HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/PDB-REDO/dssp"
+SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+BDEPEND="
+ dev-libs/boost:=[zlib]
+ >=dev-libs/libmcfp-1.2.2
+ >=sci-libs/libcifpp-5.0.8
+"
+DEPEND=""
+RDEPEND="${BDEPEND}"
+
+pkg_postinst() {
+ if has_version "<=sci-chemistry/gromacs-2022"; then
+ ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:"
+ ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129"
+ ewarn
+ ewarn "Feel free to mask newer versions if needed."
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2023-04-18 15:08 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2023-04-18 15:08 UTC (permalink / raw
To: gentoo-commits
commit: 747348cd715af4b79af7743be6eee1f51b34186d
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Tue Apr 18 14:59:40 2023 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Tue Apr 18 14:59:40 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=747348cd
sci-chemistry/dssp: drop 4.2.0
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/Manifest | 1 -
sci-chemistry/dssp/dssp-4.2.0.ebuild | 31 -------------------------------
2 files changed, 32 deletions(-)
diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest
index 8f5d275bf005..a0bf5ede05c2 100644
--- a/sci-chemistry/dssp/Manifest
+++ b/sci-chemistry/dssp/Manifest
@@ -1,4 +1,3 @@
DIST dssp-2.2.1.tgz 47141 BLAKE2B 34d8b2db8797a8c23763766c0214337f03584c4be52c1bc820a0df0db6a5f78ac0229aafdd47a60b8fd6f4832abf0399663c53f9e898c75f08ecbe22b141c8da SHA512 4a273714d6b3230daea166caa7f4117d5ccb225bea0cf1bc2eb61539b6cc8e227d0ba19047d61f0ad0d1d6bc2efdec9c193bd44341e15ef0950acb4a22498811
DIST dssp-3.0.11.tar.gz 168085 BLAKE2B e1c42fd22cfb2287f10b5deae48b56a4583d4a67737a3485dcbd160d1597a15c2d5105c3794c875d8001abede1c014efb4f7f5b7c250f867bdf9ed95a0860217 SHA512 a0cfe44e517ff1f909ef2928b62ae2c639c6bddfd8a0fb538883f647fd2771e00da68e0fd2521aa02ba3c6d1b0c9b784b7fe142392af3a3abf6ea89f1546bd9d
-DIST dssp-4.2.0.tar.gz 157104 BLAKE2B 4caffb5f7cfe2a130e3ac6c5efa41689bbbb8ee054333cd4320cf77ac36dccaa128fe816ca57b6bd287271924122de4252076628098db415c854df6f09c17ac2 SHA512 b86c736ea9fdf62be923f8a69bae56f7298cd01e6623c1f3eee6951e20483d24438b1318924e980b6a98b19c77cb84d4ba66260a575b63e7c536ecba0478c4a5
DIST dssp-4.2.2.1.tar.gz 144413 BLAKE2B 97c587bc0b4ef3d212ae81d568f817aab54f1dd2a77d170746e9b0d3f1bd63873d21fb0a7fc38c0300fc091f21241820d5d009d42a9e3e33dcc608c046185d9f SHA512 6daa41aea766940bf40afaee068daef341a7f79cae79d967b8da00e7002bdb602deaed40e452a5f0cea9aa2041a5c8678dfcae2e0f595cc5a0856392162dcdff
diff --git a/sci-chemistry/dssp/dssp-4.2.0.ebuild b/sci-chemistry/dssp/dssp-4.2.0.ebuild
deleted file mode 100644
index 3aa043cf45af..000000000000
--- a/sci-chemistry/dssp/dssp-4.2.0.ebuild
+++ /dev/null
@@ -1,31 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-inherit cmake
-
-DESCRIPTION="The protein secondary structure standard"
-HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/PDB-REDO/dssp"
-SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-BDEPEND="
- dev-libs/boost:=[zlib]
- >=dev-libs/libmcfp-1.2.2
- >=sci-libs/libcifpp-5.0.4
-"
-DEPEND=""
-RDEPEND="${BDEPEND}"
-
-pkg_postinst() {
- if has_version "<=sci-chemistry/gromacs-2022"; then
- ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:"
- ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129"
- ewarn
- ewarn "Feel free to mask newer versions if needed."
- fi
-}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2023-06-08 9:39 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2023-06-08 9:39 UTC (permalink / raw
To: gentoo-commits
commit: 0d1b3a277ae6fe5b8167ab5e628b39ae67a35cfa
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Thu Jun 8 08:58:07 2023 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Thu Jun 8 09:38:56 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0d1b3a27
sci-chemistry/dssp: add 4.3.1
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/Manifest | 1 +
sci-chemistry/dssp/dssp-4.3.1.ebuild | 39 ++++++++++++++++++++++++++++++++++++
2 files changed, 40 insertions(+)
diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest
index a0bf5ede05c2..00d6647cdc54 100644
--- a/sci-chemistry/dssp/Manifest
+++ b/sci-chemistry/dssp/Manifest
@@ -1,3 +1,4 @@
DIST dssp-2.2.1.tgz 47141 BLAKE2B 34d8b2db8797a8c23763766c0214337f03584c4be52c1bc820a0df0db6a5f78ac0229aafdd47a60b8fd6f4832abf0399663c53f9e898c75f08ecbe22b141c8da SHA512 4a273714d6b3230daea166caa7f4117d5ccb225bea0cf1bc2eb61539b6cc8e227d0ba19047d61f0ad0d1d6bc2efdec9c193bd44341e15ef0950acb4a22498811
DIST dssp-3.0.11.tar.gz 168085 BLAKE2B e1c42fd22cfb2287f10b5deae48b56a4583d4a67737a3485dcbd160d1597a15c2d5105c3794c875d8001abede1c014efb4f7f5b7c250f867bdf9ed95a0860217 SHA512 a0cfe44e517ff1f909ef2928b62ae2c639c6bddfd8a0fb538883f647fd2771e00da68e0fd2521aa02ba3c6d1b0c9b784b7fe142392af3a3abf6ea89f1546bd9d
DIST dssp-4.2.2.1.tar.gz 144413 BLAKE2B 97c587bc0b4ef3d212ae81d568f817aab54f1dd2a77d170746e9b0d3f1bd63873d21fb0a7fc38c0300fc091f21241820d5d009d42a9e3e33dcc608c046185d9f SHA512 6daa41aea766940bf40afaee068daef341a7f79cae79d967b8da00e7002bdb602deaed40e452a5f0cea9aa2041a5c8678dfcae2e0f595cc5a0856392162dcdff
+DIST dssp-4.3.1.tar.gz 226842 BLAKE2B 86318f05b8381d94fa9c65a956f5fb607ef8072b0395d912e20697ba36836c449ddff31a4a64d0005bbfe34899f71853c0f15a911042389fc894934c08fc34c8 SHA512 4dc1a3f5c7ba258ebf548674c7b33c36b0e3a7d14911394eb8d2955c235f3cb1d6c50cb03f411db55a8a9d7aa93e4d03354c47f9f0126b0bdcbf40dc9391d403
diff --git a/sci-chemistry/dssp/dssp-4.3.1.ebuild b/sci-chemistry/dssp/dssp-4.3.1.ebuild
new file mode 100644
index 000000000000..daf7c4f9314d
--- /dev/null
+++ b/sci-chemistry/dssp/dssp-4.3.1.ebuild
@@ -0,0 +1,39 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="The protein secondary structure standard"
+HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/PDB-REDO/dssp"
+SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+BDEPEND="
+ dev-libs/boost:=[zlib]
+ >=dev-libs/libmcfp-1.2.2
+ >=sci-libs/libcifpp-5.1.0
+"
+DEPEND=""
+RDEPEND="${BDEPEND}"
+
+src_configure() {
+ # gxrio not packaged
+ local mycmakeargs=(
+ -DBUILD_WEBSERVER=OFF
+ )
+ cmake_src_configure
+}
+
+pkg_postinst() {
+ if has_version "<=sci-chemistry/gromacs-2022"; then
+ ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:"
+ ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129"
+ ewarn
+ ewarn "Feel free to mask newer versions if needed."
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2023-07-20 8:12 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2023-07-20 8:12 UTC (permalink / raw
To: gentoo-commits
commit: 4b98c9b10b181708973e6af4aaf2800fcb5f4f4b
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Thu Jul 20 08:11:11 2023 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Thu Jul 20 08:11:58 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4b98c9b1
sci-chemistry/dssp: add 4.4.0
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/Manifest | 1 +
sci-chemistry/dssp/dssp-4.4.0.ebuild | 39 ++++++++++++++++++++++++++++++++++++
2 files changed, 40 insertions(+)
diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest
index 00d6647cdc54..3647716fcce1 100644
--- a/sci-chemistry/dssp/Manifest
+++ b/sci-chemistry/dssp/Manifest
@@ -2,3 +2,4 @@ DIST dssp-2.2.1.tgz 47141 BLAKE2B 34d8b2db8797a8c23763766c0214337f03584c4be52c1b
DIST dssp-3.0.11.tar.gz 168085 BLAKE2B e1c42fd22cfb2287f10b5deae48b56a4583d4a67737a3485dcbd160d1597a15c2d5105c3794c875d8001abede1c014efb4f7f5b7c250f867bdf9ed95a0860217 SHA512 a0cfe44e517ff1f909ef2928b62ae2c639c6bddfd8a0fb538883f647fd2771e00da68e0fd2521aa02ba3c6d1b0c9b784b7fe142392af3a3abf6ea89f1546bd9d
DIST dssp-4.2.2.1.tar.gz 144413 BLAKE2B 97c587bc0b4ef3d212ae81d568f817aab54f1dd2a77d170746e9b0d3f1bd63873d21fb0a7fc38c0300fc091f21241820d5d009d42a9e3e33dcc608c046185d9f SHA512 6daa41aea766940bf40afaee068daef341a7f79cae79d967b8da00e7002bdb602deaed40e452a5f0cea9aa2041a5c8678dfcae2e0f595cc5a0856392162dcdff
DIST dssp-4.3.1.tar.gz 226842 BLAKE2B 86318f05b8381d94fa9c65a956f5fb607ef8072b0395d912e20697ba36836c449ddff31a4a64d0005bbfe34899f71853c0f15a911042389fc894934c08fc34c8 SHA512 4dc1a3f5c7ba258ebf548674c7b33c36b0e3a7d14911394eb8d2955c235f3cb1d6c50cb03f411db55a8a9d7aa93e4d03354c47f9f0126b0bdcbf40dc9391d403
+DIST dssp-4.4.0.tar.gz 161773 BLAKE2B 87673be73f3163ba6fa090cc7acd4f864d41922033da9d126535b84e2da4defaaa8781a8cda6e80103dc75359718cd867b9baf90c74ae3ff923e212b520998a2 SHA512 1b09306c05587c278fcd881e0d3c169d44d960d8578f310adbd79b054683c257d0ee00d6bdfb5b0d7cd81c224f3572c2c7538a42d964817d587632128b96daa9
diff --git a/sci-chemistry/dssp/dssp-4.4.0.ebuild b/sci-chemistry/dssp/dssp-4.4.0.ebuild
new file mode 100644
index 000000000000..daf7c4f9314d
--- /dev/null
+++ b/sci-chemistry/dssp/dssp-4.4.0.ebuild
@@ -0,0 +1,39 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="The protein secondary structure standard"
+HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/PDB-REDO/dssp"
+SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+BDEPEND="
+ dev-libs/boost:=[zlib]
+ >=dev-libs/libmcfp-1.2.2
+ >=sci-libs/libcifpp-5.1.0
+"
+DEPEND=""
+RDEPEND="${BDEPEND}"
+
+src_configure() {
+ # gxrio not packaged
+ local mycmakeargs=(
+ -DBUILD_WEBSERVER=OFF
+ )
+ cmake_src_configure
+}
+
+pkg_postinst() {
+ if has_version "<=sci-chemistry/gromacs-2022"; then
+ ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:"
+ ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129"
+ ewarn
+ ewarn "Feel free to mask newer versions if needed."
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2023-07-20 8:12 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2023-07-20 8:12 UTC (permalink / raw
To: gentoo-commits
commit: ec43d9dce0305722e4ed28bb568bdeb44ebc74b0
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Thu Jul 20 08:11:21 2023 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Thu Jul 20 08:11:59 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ec43d9dc
sci-chemistry/dssp: drop 4.2.2.1
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/Manifest | 1 -
sci-chemistry/dssp/dssp-4.2.2.1.ebuild | 31 -------------------------------
2 files changed, 32 deletions(-)
diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest
index 3647716fcce1..d8219dde5151 100644
--- a/sci-chemistry/dssp/Manifest
+++ b/sci-chemistry/dssp/Manifest
@@ -1,5 +1,4 @@
DIST dssp-2.2.1.tgz 47141 BLAKE2B 34d8b2db8797a8c23763766c0214337f03584c4be52c1bc820a0df0db6a5f78ac0229aafdd47a60b8fd6f4832abf0399663c53f9e898c75f08ecbe22b141c8da SHA512 4a273714d6b3230daea166caa7f4117d5ccb225bea0cf1bc2eb61539b6cc8e227d0ba19047d61f0ad0d1d6bc2efdec9c193bd44341e15ef0950acb4a22498811
DIST dssp-3.0.11.tar.gz 168085 BLAKE2B e1c42fd22cfb2287f10b5deae48b56a4583d4a67737a3485dcbd160d1597a15c2d5105c3794c875d8001abede1c014efb4f7f5b7c250f867bdf9ed95a0860217 SHA512 a0cfe44e517ff1f909ef2928b62ae2c639c6bddfd8a0fb538883f647fd2771e00da68e0fd2521aa02ba3c6d1b0c9b784b7fe142392af3a3abf6ea89f1546bd9d
-DIST dssp-4.2.2.1.tar.gz 144413 BLAKE2B 97c587bc0b4ef3d212ae81d568f817aab54f1dd2a77d170746e9b0d3f1bd63873d21fb0a7fc38c0300fc091f21241820d5d009d42a9e3e33dcc608c046185d9f SHA512 6daa41aea766940bf40afaee068daef341a7f79cae79d967b8da00e7002bdb602deaed40e452a5f0cea9aa2041a5c8678dfcae2e0f595cc5a0856392162dcdff
DIST dssp-4.3.1.tar.gz 226842 BLAKE2B 86318f05b8381d94fa9c65a956f5fb607ef8072b0395d912e20697ba36836c449ddff31a4a64d0005bbfe34899f71853c0f15a911042389fc894934c08fc34c8 SHA512 4dc1a3f5c7ba258ebf548674c7b33c36b0e3a7d14911394eb8d2955c235f3cb1d6c50cb03f411db55a8a9d7aa93e4d03354c47f9f0126b0bdcbf40dc9391d403
DIST dssp-4.4.0.tar.gz 161773 BLAKE2B 87673be73f3163ba6fa090cc7acd4f864d41922033da9d126535b84e2da4defaaa8781a8cda6e80103dc75359718cd867b9baf90c74ae3ff923e212b520998a2 SHA512 1b09306c05587c278fcd881e0d3c169d44d960d8578f310adbd79b054683c257d0ee00d6bdfb5b0d7cd81c224f3572c2c7538a42d964817d587632128b96daa9
diff --git a/sci-chemistry/dssp/dssp-4.2.2.1.ebuild b/sci-chemistry/dssp/dssp-4.2.2.1.ebuild
deleted file mode 100644
index 32167a786c22..000000000000
--- a/sci-chemistry/dssp/dssp-4.2.2.1.ebuild
+++ /dev/null
@@ -1,31 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-inherit cmake
-
-DESCRIPTION="The protein secondary structure standard"
-HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/PDB-REDO/dssp"
-SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-BDEPEND="
- dev-libs/boost:=[zlib]
- >=dev-libs/libmcfp-1.2.2
- >=sci-libs/libcifpp-5.0.8
-"
-DEPEND=""
-RDEPEND="${BDEPEND}"
-
-pkg_postinst() {
- if has_version "<=sci-chemistry/gromacs-2022"; then
- ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:"
- ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129"
- ewarn
- ewarn "Feel free to mask newer versions if needed."
- fi
-}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2023-07-21 8:01 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2023-07-21 8:01 UTC (permalink / raw
To: gentoo-commits
commit: 4eef8956d16195c0f9ce801271727c1c9327f2d3
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Fri Jul 21 08:00:51 2023 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Fri Jul 21 08:01:18 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4eef8956
sci-chemistry/dssp: drop 4.4.0
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/Manifest | 1 -
sci-chemistry/dssp/dssp-4.4.0.ebuild | 39 ------------------------------------
2 files changed, 40 deletions(-)
diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest
index f4b46c4fa494..efda44191d90 100644
--- a/sci-chemistry/dssp/Manifest
+++ b/sci-chemistry/dssp/Manifest
@@ -1,5 +1,4 @@
DIST dssp-2.2.1.tgz 47141 BLAKE2B 34d8b2db8797a8c23763766c0214337f03584c4be52c1bc820a0df0db6a5f78ac0229aafdd47a60b8fd6f4832abf0399663c53f9e898c75f08ecbe22b141c8da SHA512 4a273714d6b3230daea166caa7f4117d5ccb225bea0cf1bc2eb61539b6cc8e227d0ba19047d61f0ad0d1d6bc2efdec9c193bd44341e15ef0950acb4a22498811
DIST dssp-3.0.11.tar.gz 168085 BLAKE2B e1c42fd22cfb2287f10b5deae48b56a4583d4a67737a3485dcbd160d1597a15c2d5105c3794c875d8001abede1c014efb4f7f5b7c250f867bdf9ed95a0860217 SHA512 a0cfe44e517ff1f909ef2928b62ae2c639c6bddfd8a0fb538883f647fd2771e00da68e0fd2521aa02ba3c6d1b0c9b784b7fe142392af3a3abf6ea89f1546bd9d
DIST dssp-4.3.1.tar.gz 226842 BLAKE2B 86318f05b8381d94fa9c65a956f5fb607ef8072b0395d912e20697ba36836c449ddff31a4a64d0005bbfe34899f71853c0f15a911042389fc894934c08fc34c8 SHA512 4dc1a3f5c7ba258ebf548674c7b33c36b0e3a7d14911394eb8d2955c235f3cb1d6c50cb03f411db55a8a9d7aa93e4d03354c47f9f0126b0bdcbf40dc9391d403
-DIST dssp-4.4.0.tar.gz 161773 BLAKE2B 87673be73f3163ba6fa090cc7acd4f864d41922033da9d126535b84e2da4defaaa8781a8cda6e80103dc75359718cd867b9baf90c74ae3ff923e212b520998a2 SHA512 1b09306c05587c278fcd881e0d3c169d44d960d8578f310adbd79b054683c257d0ee00d6bdfb5b0d7cd81c224f3572c2c7538a42d964817d587632128b96daa9
DIST dssp-4.4.1.tar.gz 161797 BLAKE2B d6bfb40a730f39e9d5a0988ce22a9dd377ec08a09e29f77e5afaac26d512cf87f6e289c1e4e3e63cfef7354b10fb57bf410bcc169604b1b6a6078380e4f08d26 SHA512 1bcf9e16efc5d3a7de11e24ed63e47d3263123af4670b8f3daa97cdf7cc33202fb4d564acac3024ed4edcce1ef8278f71f5312f27a234d2957afa6f563c88ed6
diff --git a/sci-chemistry/dssp/dssp-4.4.0.ebuild b/sci-chemistry/dssp/dssp-4.4.0.ebuild
deleted file mode 100644
index daf7c4f9314d..000000000000
--- a/sci-chemistry/dssp/dssp-4.4.0.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-inherit cmake
-
-DESCRIPTION="The protein secondary structure standard"
-HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/PDB-REDO/dssp"
-SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-BDEPEND="
- dev-libs/boost:=[zlib]
- >=dev-libs/libmcfp-1.2.2
- >=sci-libs/libcifpp-5.1.0
-"
-DEPEND=""
-RDEPEND="${BDEPEND}"
-
-src_configure() {
- # gxrio not packaged
- local mycmakeargs=(
- -DBUILD_WEBSERVER=OFF
- )
- cmake_src_configure
-}
-
-pkg_postinst() {
- if has_version "<=sci-chemistry/gromacs-2022"; then
- ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:"
- ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129"
- ewarn
- ewarn "Feel free to mask newer versions if needed."
- fi
-}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2023-07-21 8:01 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2023-07-21 8:01 UTC (permalink / raw
To: gentoo-commits
commit: ddf8fcf2b6c6e590991202b108173b2e9792fe3d
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Fri Jul 21 08:00:36 2023 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Fri Jul 21 08:01:18 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ddf8fcf2
sci-chemistry/dssp: add 4.4.1
Closes: https://bugs.gentoo.org/910585
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/Manifest | 1 +
sci-chemistry/dssp/dssp-4.4.1.ebuild | 54 ++++++++++++++++++++++++++++++++++++
2 files changed, 55 insertions(+)
diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest
index d8219dde5151..f4b46c4fa494 100644
--- a/sci-chemistry/dssp/Manifest
+++ b/sci-chemistry/dssp/Manifest
@@ -2,3 +2,4 @@ DIST dssp-2.2.1.tgz 47141 BLAKE2B 34d8b2db8797a8c23763766c0214337f03584c4be52c1b
DIST dssp-3.0.11.tar.gz 168085 BLAKE2B e1c42fd22cfb2287f10b5deae48b56a4583d4a67737a3485dcbd160d1597a15c2d5105c3794c875d8001abede1c014efb4f7f5b7c250f867bdf9ed95a0860217 SHA512 a0cfe44e517ff1f909ef2928b62ae2c639c6bddfd8a0fb538883f647fd2771e00da68e0fd2521aa02ba3c6d1b0c9b784b7fe142392af3a3abf6ea89f1546bd9d
DIST dssp-4.3.1.tar.gz 226842 BLAKE2B 86318f05b8381d94fa9c65a956f5fb607ef8072b0395d912e20697ba36836c449ddff31a4a64d0005bbfe34899f71853c0f15a911042389fc894934c08fc34c8 SHA512 4dc1a3f5c7ba258ebf548674c7b33c36b0e3a7d14911394eb8d2955c235f3cb1d6c50cb03f411db55a8a9d7aa93e4d03354c47f9f0126b0bdcbf40dc9391d403
DIST dssp-4.4.0.tar.gz 161773 BLAKE2B 87673be73f3163ba6fa090cc7acd4f864d41922033da9d126535b84e2da4defaaa8781a8cda6e80103dc75359718cd867b9baf90c74ae3ff923e212b520998a2 SHA512 1b09306c05587c278fcd881e0d3c169d44d960d8578f310adbd79b054683c257d0ee00d6bdfb5b0d7cd81c224f3572c2c7538a42d964817d587632128b96daa9
+DIST dssp-4.4.1.tar.gz 161797 BLAKE2B d6bfb40a730f39e9d5a0988ce22a9dd377ec08a09e29f77e5afaac26d512cf87f6e289c1e4e3e63cfef7354b10fb57bf410bcc169604b1b6a6078380e4f08d26 SHA512 1bcf9e16efc5d3a7de11e24ed63e47d3263123af4670b8f3daa97cdf7cc33202fb4d564acac3024ed4edcce1ef8278f71f5312f27a234d2957afa6f563c88ed6
diff --git a/sci-chemistry/dssp/dssp-4.4.1.ebuild b/sci-chemistry/dssp/dssp-4.4.1.ebuild
new file mode 100644
index 000000000000..d79883c4e211
--- /dev/null
+++ b/sci-chemistry/dssp/dssp-4.4.1.ebuild
@@ -0,0 +1,54 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="The protein secondary structure standard"
+HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/PDB-REDO/dssp"
+SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+# doc disabled as it only generates a PDF from the manpage for now
+# https://github.com/PDB-REDO/dssp/issues/64
+#IUSE="doc"
+
+CDEPEND="
+ dev-libs/boost:=[zlib]
+ >=dev-libs/libmcfp-1.2.2
+ >=sci-libs/libcifpp-5.1.0
+"
+BDEPEND="${CDEPEND}"
+# doc? (
+# || ( app-text/pandoc-bin[pandoc-symlink] app-text/pandoc )
+# dev-python/weasyprint
+# )
+DEPEND=""
+RDEPEND="${CDEPEND}"
+
+#src_prepare() {
+# # wkhtmltopdf is not available on Gentoo
+# sed -i -e \
+# 's/-t html/-t html --pdf-engine=weasyprint/' \
+# CMakeLists.txt
+# cmake_src_prepare
+#}
+
+src_configure() {
+ local mycmakeargs=(
+ #-DGENERATE_DOCUMENTATION=$(usex doc)
+ -DGENERATE_DOCUMENTATION=NO
+ )
+ cmake_src_configure
+}
+
+pkg_postinst() {
+ if has_version "<=sci-chemistry/gromacs-2022"; then
+ ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:"
+ ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129"
+ ewarn
+ ewarn "Feel free to mask newer versions if needed."
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2023-10-26 15:09 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2023-10-26 15:09 UTC (permalink / raw
To: gentoo-commits
commit: aeaa1af9440c77657790fd8d0248f1a248fff926
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Thu Oct 26 14:27:38 2023 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Thu Oct 26 15:09:41 2023 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=aeaa1af9
sci-chemistry/dssp: add 4.4.4.1
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/Manifest | 1 +
sci-chemistry/dssp/dssp-4.4.4.1.ebuild | 54 ++++++++++++++++++++++++++++++++++
2 files changed, 55 insertions(+)
diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest
index efda44191d90..ab8d9af141e6 100644
--- a/sci-chemistry/dssp/Manifest
+++ b/sci-chemistry/dssp/Manifest
@@ -2,3 +2,4 @@ DIST dssp-2.2.1.tgz 47141 BLAKE2B 34d8b2db8797a8c23763766c0214337f03584c4be52c1b
DIST dssp-3.0.11.tar.gz 168085 BLAKE2B e1c42fd22cfb2287f10b5deae48b56a4583d4a67737a3485dcbd160d1597a15c2d5105c3794c875d8001abede1c014efb4f7f5b7c250f867bdf9ed95a0860217 SHA512 a0cfe44e517ff1f909ef2928b62ae2c639c6bddfd8a0fb538883f647fd2771e00da68e0fd2521aa02ba3c6d1b0c9b784b7fe142392af3a3abf6ea89f1546bd9d
DIST dssp-4.3.1.tar.gz 226842 BLAKE2B 86318f05b8381d94fa9c65a956f5fb607ef8072b0395d912e20697ba36836c449ddff31a4a64d0005bbfe34899f71853c0f15a911042389fc894934c08fc34c8 SHA512 4dc1a3f5c7ba258ebf548674c7b33c36b0e3a7d14911394eb8d2955c235f3cb1d6c50cb03f411db55a8a9d7aa93e4d03354c47f9f0126b0bdcbf40dc9391d403
DIST dssp-4.4.1.tar.gz 161797 BLAKE2B d6bfb40a730f39e9d5a0988ce22a9dd377ec08a09e29f77e5afaac26d512cf87f6e289c1e4e3e63cfef7354b10fb57bf410bcc169604b1b6a6078380e4f08d26 SHA512 1bcf9e16efc5d3a7de11e24ed63e47d3263123af4670b8f3daa97cdf7cc33202fb4d564acac3024ed4edcce1ef8278f71f5312f27a234d2957afa6f563c88ed6
+DIST dssp-4.4.4.1.tar.gz 162809 BLAKE2B 6c3f588a48778cf5f20b40b93736e150a4d366bf44d214b4064362c2a3bce69db415f5d12568a8523d99e2e5a47749d450ff0251dc3035628dbef9343d37e99a SHA512 291810391d74da7ab65bcf4aab61fa4ae1a5518a361fa02d5c15ed0e5c94139fde65e7612a978f5326bd7d93f2ac6ea01b2b65514d6b64f4d062adf112c48deb
diff --git a/sci-chemistry/dssp/dssp-4.4.4.1.ebuild b/sci-chemistry/dssp/dssp-4.4.4.1.ebuild
new file mode 100644
index 000000000000..a274099244cf
--- /dev/null
+++ b/sci-chemistry/dssp/dssp-4.4.4.1.ebuild
@@ -0,0 +1,54 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="The protein secondary structure standard"
+HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/PDB-REDO/dssp"
+SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+# doc disabled as it only generates a PDF from the manpage for now
+# https://github.com/PDB-REDO/dssp/issues/64
+#IUSE="doc"
+
+CDEPEND="
+ dev-libs/boost:=[zlib]
+ >=dev-libs/libmcfp-1.2.2
+ >=sci-libs/libcifpp-5.2.0
+"
+BDEPEND="${CDEPEND}"
+# doc? (
+# || ( app-text/pandoc-bin[pandoc-symlink] app-text/pandoc )
+# dev-python/weasyprint
+# )
+DEPEND=""
+RDEPEND="${CDEPEND}"
+
+#src_prepare() {
+# # wkhtmltopdf is not available on Gentoo
+# sed -i -e \
+# 's/-t html/-t html --pdf-engine=weasyprint/' \
+# CMakeLists.txt
+# cmake_src_prepare
+#}
+
+src_configure() {
+ local mycmakeargs=(
+ #-DBUILD_DOCUMENTATION=$(usex doc)
+ -DBUILD_DOCUMENTATION=NO
+ )
+ cmake_src_configure
+}
+
+pkg_postinst() {
+ if has_version "<=sci-chemistry/gromacs-2022"; then
+ ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:"
+ ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129"
+ ewarn
+ ewarn "Feel free to mask newer versions if needed."
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2024-05-18 10:06 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2024-05-18 10:06 UTC (permalink / raw
To: gentoo-commits
commit: d5d7440bb66efbb4aa392e03a27cc9f9a858e819
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Sat May 18 10:06:13 2024 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Sat May 18 10:06:40 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d5d7440b
sci-chemistry/dssp: Fix EmptyGlobalAssignment warning
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/dssp-4.4.7.ebuild | 1 -
1 file changed, 1 deletion(-)
diff --git a/sci-chemistry/dssp/dssp-4.4.7.ebuild b/sci-chemistry/dssp/dssp-4.4.7.ebuild
index 4b22c93cb749..cebac1ce3a1a 100644
--- a/sci-chemistry/dssp/dssp-4.4.7.ebuild
+++ b/sci-chemistry/dssp/dssp-4.4.7.ebuild
@@ -25,7 +25,6 @@ BDEPEND="${CDEPEND}"
# || ( app-text/pandoc-bin[pandoc-symlink] app-text/pandoc )
# dev-python/weasyprint
# )
-DEPEND=""
RDEPEND="${CDEPEND}"
#src_prepare() {
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2024-05-18 10:06 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2024-05-18 10:06 UTC (permalink / raw
To: gentoo-commits
commit: 0262304a0e66328fe0b605343b0dcb05fca7f97c
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Sat May 18 10:03:52 2024 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Sat May 18 10:06:40 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0262304a
sci-chemistry/dssp: add 4.4.7
Closes: https://bugs.gentoo.org/924695
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/Manifest | 1 +
sci-chemistry/dssp/dssp-4.4.7.ebuild | 54 ++++++++++++++++++++++++++++++++++++
2 files changed, 55 insertions(+)
diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest
index ab8d9af141e6..8388d09b6c61 100644
--- a/sci-chemistry/dssp/Manifest
+++ b/sci-chemistry/dssp/Manifest
@@ -3,3 +3,4 @@ DIST dssp-3.0.11.tar.gz 168085 BLAKE2B e1c42fd22cfb2287f10b5deae48b56a4583d4a677
DIST dssp-4.3.1.tar.gz 226842 BLAKE2B 86318f05b8381d94fa9c65a956f5fb607ef8072b0395d912e20697ba36836c449ddff31a4a64d0005bbfe34899f71853c0f15a911042389fc894934c08fc34c8 SHA512 4dc1a3f5c7ba258ebf548674c7b33c36b0e3a7d14911394eb8d2955c235f3cb1d6c50cb03f411db55a8a9d7aa93e4d03354c47f9f0126b0bdcbf40dc9391d403
DIST dssp-4.4.1.tar.gz 161797 BLAKE2B d6bfb40a730f39e9d5a0988ce22a9dd377ec08a09e29f77e5afaac26d512cf87f6e289c1e4e3e63cfef7354b10fb57bf410bcc169604b1b6a6078380e4f08d26 SHA512 1bcf9e16efc5d3a7de11e24ed63e47d3263123af4670b8f3daa97cdf7cc33202fb4d564acac3024ed4edcce1ef8278f71f5312f27a234d2957afa6f563c88ed6
DIST dssp-4.4.4.1.tar.gz 162809 BLAKE2B 6c3f588a48778cf5f20b40b93736e150a4d366bf44d214b4064362c2a3bce69db415f5d12568a8523d99e2e5a47749d450ff0251dc3035628dbef9343d37e99a SHA512 291810391d74da7ab65bcf4aab61fa4ae1a5518a361fa02d5c15ed0e5c94139fde65e7612a978f5326bd7d93f2ac6ea01b2b65514d6b64f4d062adf112c48deb
+DIST dssp-4.4.7.tar.gz 163831 BLAKE2B 195c8fb183df00105098967850b01c0d6acf776f7cfa409fc536c8291e7a467da2adfb5f34d8191e33dbb29bfd254cd414c1b7b76ed3f3b854928c4dc8a5fcdd SHA512 2fe2d8a494b570934c0d28804fe69b6569089ded58ec92bf3d83b25ce60a3b9486490909e187b511328f13498ca9027869e922d95a355cf0e21c2564c2db1b5a
diff --git a/sci-chemistry/dssp/dssp-4.4.7.ebuild b/sci-chemistry/dssp/dssp-4.4.7.ebuild
new file mode 100644
index 000000000000..4b22c93cb749
--- /dev/null
+++ b/sci-chemistry/dssp/dssp-4.4.7.ebuild
@@ -0,0 +1,54 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="The protein secondary structure standard"
+HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/PDB-REDO/dssp"
+SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+# doc disabled as it only generates a PDF from the manpage for now
+# https://github.com/PDB-REDO/dssp/issues/64
+#IUSE="doc"
+
+CDEPEND="
+ dev-libs/boost:=[zlib]
+ >=dev-libs/libmcfp-1.2.2
+ >=sci-libs/libcifpp-7.0.3
+"
+BDEPEND="${CDEPEND}"
+# doc? (
+# || ( app-text/pandoc-bin[pandoc-symlink] app-text/pandoc )
+# dev-python/weasyprint
+# )
+DEPEND=""
+RDEPEND="${CDEPEND}"
+
+#src_prepare() {
+# # wkhtmltopdf is not available on Gentoo
+# sed -i -e \
+# 's/-t html/-t html --pdf-engine=weasyprint/' \
+# CMakeLists.txt
+# cmake_src_prepare
+#}
+
+src_configure() {
+ local mycmakeargs=(
+ #-DBUILD_DOCUMENTATION=$(usex doc)
+ -DBUILD_DOCUMENTATION=NO
+ )
+ cmake_src_configure
+}
+
+pkg_postinst() {
+ if has_version "<=sci-chemistry/gromacs-2022"; then
+ ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:"
+ ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129"
+ ewarn
+ ewarn "Feel free to mask newer versions if needed."
+ fi
+}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2024-05-18 10:06 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2024-05-18 10:06 UTC (permalink / raw
To: gentoo-commits
commit: 07938027cc64d6cd7a6014b13a2e78499ad17042
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Sat May 18 10:04:11 2024 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Sat May 18 10:06:40 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=07938027
sci-chemistry/dssp: drop 4.3.1, 4.4.1
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/Manifest | 2 --
sci-chemistry/dssp/dssp-4.3.1.ebuild | 39 --------------------------
sci-chemistry/dssp/dssp-4.4.1.ebuild | 54 ------------------------------------
3 files changed, 95 deletions(-)
diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest
index 8388d09b6c61..34adeb159346 100644
--- a/sci-chemistry/dssp/Manifest
+++ b/sci-chemistry/dssp/Manifest
@@ -1,6 +1,4 @@
DIST dssp-2.2.1.tgz 47141 BLAKE2B 34d8b2db8797a8c23763766c0214337f03584c4be52c1bc820a0df0db6a5f78ac0229aafdd47a60b8fd6f4832abf0399663c53f9e898c75f08ecbe22b141c8da SHA512 4a273714d6b3230daea166caa7f4117d5ccb225bea0cf1bc2eb61539b6cc8e227d0ba19047d61f0ad0d1d6bc2efdec9c193bd44341e15ef0950acb4a22498811
DIST dssp-3.0.11.tar.gz 168085 BLAKE2B e1c42fd22cfb2287f10b5deae48b56a4583d4a67737a3485dcbd160d1597a15c2d5105c3794c875d8001abede1c014efb4f7f5b7c250f867bdf9ed95a0860217 SHA512 a0cfe44e517ff1f909ef2928b62ae2c639c6bddfd8a0fb538883f647fd2771e00da68e0fd2521aa02ba3c6d1b0c9b784b7fe142392af3a3abf6ea89f1546bd9d
-DIST dssp-4.3.1.tar.gz 226842 BLAKE2B 86318f05b8381d94fa9c65a956f5fb607ef8072b0395d912e20697ba36836c449ddff31a4a64d0005bbfe34899f71853c0f15a911042389fc894934c08fc34c8 SHA512 4dc1a3f5c7ba258ebf548674c7b33c36b0e3a7d14911394eb8d2955c235f3cb1d6c50cb03f411db55a8a9d7aa93e4d03354c47f9f0126b0bdcbf40dc9391d403
-DIST dssp-4.4.1.tar.gz 161797 BLAKE2B d6bfb40a730f39e9d5a0988ce22a9dd377ec08a09e29f77e5afaac26d512cf87f6e289c1e4e3e63cfef7354b10fb57bf410bcc169604b1b6a6078380e4f08d26 SHA512 1bcf9e16efc5d3a7de11e24ed63e47d3263123af4670b8f3daa97cdf7cc33202fb4d564acac3024ed4edcce1ef8278f71f5312f27a234d2957afa6f563c88ed6
DIST dssp-4.4.4.1.tar.gz 162809 BLAKE2B 6c3f588a48778cf5f20b40b93736e150a4d366bf44d214b4064362c2a3bce69db415f5d12568a8523d99e2e5a47749d450ff0251dc3035628dbef9343d37e99a SHA512 291810391d74da7ab65bcf4aab61fa4ae1a5518a361fa02d5c15ed0e5c94139fde65e7612a978f5326bd7d93f2ac6ea01b2b65514d6b64f4d062adf112c48deb
DIST dssp-4.4.7.tar.gz 163831 BLAKE2B 195c8fb183df00105098967850b01c0d6acf776f7cfa409fc536c8291e7a467da2adfb5f34d8191e33dbb29bfd254cd414c1b7b76ed3f3b854928c4dc8a5fcdd SHA512 2fe2d8a494b570934c0d28804fe69b6569089ded58ec92bf3d83b25ce60a3b9486490909e187b511328f13498ca9027869e922d95a355cf0e21c2564c2db1b5a
diff --git a/sci-chemistry/dssp/dssp-4.3.1.ebuild b/sci-chemistry/dssp/dssp-4.3.1.ebuild
deleted file mode 100644
index daf7c4f9314d..000000000000
--- a/sci-chemistry/dssp/dssp-4.3.1.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-inherit cmake
-
-DESCRIPTION="The protein secondary structure standard"
-HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/PDB-REDO/dssp"
-SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-BDEPEND="
- dev-libs/boost:=[zlib]
- >=dev-libs/libmcfp-1.2.2
- >=sci-libs/libcifpp-5.1.0
-"
-DEPEND=""
-RDEPEND="${BDEPEND}"
-
-src_configure() {
- # gxrio not packaged
- local mycmakeargs=(
- -DBUILD_WEBSERVER=OFF
- )
- cmake_src_configure
-}
-
-pkg_postinst() {
- if has_version "<=sci-chemistry/gromacs-2022"; then
- ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:"
- ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129"
- ewarn
- ewarn "Feel free to mask newer versions if needed."
- fi
-}
diff --git a/sci-chemistry/dssp/dssp-4.4.1.ebuild b/sci-chemistry/dssp/dssp-4.4.1.ebuild
deleted file mode 100644
index d79883c4e211..000000000000
--- a/sci-chemistry/dssp/dssp-4.4.1.ebuild
+++ /dev/null
@@ -1,54 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-inherit cmake
-
-DESCRIPTION="The protein secondary structure standard"
-HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/PDB-REDO/dssp"
-SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-# doc disabled as it only generates a PDF from the manpage for now
-# https://github.com/PDB-REDO/dssp/issues/64
-#IUSE="doc"
-
-CDEPEND="
- dev-libs/boost:=[zlib]
- >=dev-libs/libmcfp-1.2.2
- >=sci-libs/libcifpp-5.1.0
-"
-BDEPEND="${CDEPEND}"
-# doc? (
-# || ( app-text/pandoc-bin[pandoc-symlink] app-text/pandoc )
-# dev-python/weasyprint
-# )
-DEPEND=""
-RDEPEND="${CDEPEND}"
-
-#src_prepare() {
-# # wkhtmltopdf is not available on Gentoo
-# sed -i -e \
-# 's/-t html/-t html --pdf-engine=weasyprint/' \
-# CMakeLists.txt
-# cmake_src_prepare
-#}
-
-src_configure() {
- local mycmakeargs=(
- #-DGENERATE_DOCUMENTATION=$(usex doc)
- -DGENERATE_DOCUMENTATION=NO
- )
- cmake_src_configure
-}
-
-pkg_postinst() {
- if has_version "<=sci-chemistry/gromacs-2022"; then
- ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:"
- ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129"
- ewarn
- ewarn "Feel free to mask newer versions if needed."
- fi
-}
^ permalink raw reply related [flat|nested] 38+ messages in thread
* [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/dssp/
@ 2024-06-01 11:08 Pacho Ramos
0 siblings, 0 replies; 38+ messages in thread
From: Pacho Ramos @ 2024-06-01 11:08 UTC (permalink / raw
To: gentoo-commits
commit: fbd3150360d6bfdc71eaa5ce19d6f5e9ccfe5033
Author: Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Sat Jun 1 10:52:13 2024 +0000
Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Sat Jun 1 11:05:42 2024 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fbd31503
sci-chemistry/dssp: Add missing dependency
Closes: https://bugs.gentoo.org/932159
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>
sci-chemistry/dssp/dssp-4.4.7.ebuild | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/sci-chemistry/dssp/dssp-4.4.7.ebuild b/sci-chemistry/dssp/dssp-4.4.7.ebuild
index cebac1ce3a1a..d5e51fe40fec 100644
--- a/sci-chemistry/dssp/dssp-4.4.7.ebuild
+++ b/sci-chemistry/dssp/dssp-4.4.7.ebuild
@@ -20,7 +20,9 @@ CDEPEND="
>=dev-libs/libmcfp-1.2.2
>=sci-libs/libcifpp-7.0.3
"
-BDEPEND="${CDEPEND}"
+BDEPEND="${CDEPEND}
+ dev-cpp/catch:0
+"
# doc? (
# || ( app-text/pandoc-bin[pandoc-symlink] app-text/pandoc )
# dev-python/weasyprint
^ permalink raw reply related [flat|nested] 38+ messages in thread
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