[gentoo-commits] proj/sci:master commit in: dev-python/gffpandas/

[gentoo-commits] proj/sci:master commit in: dev-python/gffpandas/

[Andrew Ammerlaan]

commit:     1d627c06654e471d2c1511af0722e2f8294f8485
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Sun Jul 18 11:01:32 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Sun Jul 18 11:01:32 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=1d627c06

dev-python/gffpandas: fix test/doc/prepare

Package-Manager: Portage-3.0.20, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 dev-python/gffpandas/gffpandas-1.2.0.ebuild | 17 ++++++++++++-----
 1 file changed, 12 insertions(+), 5 deletions(-)

diff --git a/dev-python/gffpandas/gffpandas-1.2.0.ebuild b/dev-python/gffpandas/gffpandas-1.2.0.ebuild
index 461712be5..12ec9927c 100644
--- a/dev-python/gffpandas/gffpandas-1.2.0.ebuild
+++ b/dev-python/gffpandas/gffpandas-1.2.0.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_{7..9} )
+PYTHON_COMPAT=( python3_{8..10} )
 
 inherit distutils-r1
 
@@ -15,8 +15,15 @@ SRC_URI="https://github.com/foerstner-lab/${PN}/archive/v${PV}.tar.gz -> ${P}.ta
 LICENSE="ISC"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
-RESTRICT="test"
 
-DEPEND="dev-python/pandas[${PYTHON_USEDEP}]"
-RDEPEND="${DEPEND}"
-BDEPEND=""
+RDEPEND="dev-python/pandas[${PYTHON_USEDEP}]"
+
+distutils_enable_tests pytest
+distutils_enable_sphinx docs/source dev-python/sphinx_rtd_theme
+
+python_prepare_all() {
+	# Do not depend on pytest-runner
+	sed -i -e '/pytest-runner/d' setup.py || die
+
+	distutils-r1_python_prepare_all
+}

[gentoo-commits] proj/sci:master commit in: dev-python/gffpandas/

[Andrew Ammerlaan]

commit:     ef95210f00ed8d25fd7ce4d02c269a9f40555438
Author:     Martin Mokrejs <mmokrejs <AT> gmail <DOT> com>
AuthorDate: Fri Mar 19 10:17:14 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Sun Jul 18 10:55:20 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=ef95210f

dev-python/gffpandas: proposal for a new package

Also, not setup correctly, something is wrong

Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Martin Mokrejs <mmokrejs <AT> gmail.com>
Closes: https://github.com/gentoo/sci/pull/1069
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 dev-python/gffpandas/gffpandas-1.2.0.ebuild | 22 ++++++++++++++++++++++
 dev-python/gffpandas/metadata.xml           | 16 ++++++++++++++++
 2 files changed, 38 insertions(+)

diff --git a/dev-python/gffpandas/gffpandas-1.2.0.ebuild b/dev-python/gffpandas/gffpandas-1.2.0.ebuild
new file mode 100644
index 000000000..461712be5
--- /dev/null
+++ b/dev-python/gffpandas/gffpandas-1.2.0.ebuild
@@ -0,0 +1,22 @@
+# Copyright 2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{7..9} )
+
+inherit distutils-r1
+
+DESCRIPTION="Python library to Filter and sort GFF3 annotations"
+HOMEPAGE="https://github.com/foerstner-lab/gffpandas
+	https://gffpandas.readthedocs.io/en/latest/"
+SRC_URI="https://github.com/foerstner-lab/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="ISC"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+RESTRICT="test"
+
+DEPEND="dev-python/pandas[${PYTHON_USEDEP}]"
+RDEPEND="${DEPEND}"
+BDEPEND=""

diff --git a/dev-python/gffpandas/metadata.xml b/dev-python/gffpandas/metadata.xml
new file mode 100644
index 000000000..c3d31ba1d
--- /dev/null
+++ b/dev-python/gffpandas/metadata.xml
@@ -0,0 +1,16 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<email>mmokrejs@fold.natur.cuni.cz</email>
+		<name>Martin Mokrejs</name>
+	</maintainer>
+	<maintainer type="project">
+		<email>sci-biology@gentoo.org</email>
+		<name>Gentoo Biology Project</name>
+	</maintainer>
+	<upstream>
+		<remote-id type="github">foerstner-lab/gffpandas</remote-id>
+		<remote-id type="pypi">gffpandas</remote-id>
+	</upstream>
+</pkgmetadata>

[gentoo-commits] proj/sci:master commit in: dev-python/gffpandas/

[Horea Christian]

commit:     12064c3addc5790e966aaa6eb43454ec1faa483d
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Feb 16 08:07:31 2023 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Feb 16 08:07:42 2023 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=12064c3a

dev-python/gffpandas: GH SRC_URI file suffix

Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 dev-python/gffpandas/gffpandas-1.2.0.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/dev-python/gffpandas/gffpandas-1.2.0.ebuild b/dev-python/gffpandas/gffpandas-1.2.0.ebuild
index d6a5d3979..e0fe2f621 100644
--- a/dev-python/gffpandas/gffpandas-1.2.0.ebuild
+++ b/dev-python/gffpandas/gffpandas-1.2.0.ebuild
@@ -10,7 +10,7 @@ inherit distutils-r1
 DESCRIPTION="Python library to Filter and sort GFF3 annotations"
 HOMEPAGE="https://github.com/foerstner-lab/gffpandas
 	https://gffpandas.readthedocs.io/en/latest/"
-SRC_URI="https://github.com/foerstner-lab/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+SRC_URI="https://github.com/foerstner-lab/${PN}/archive/v${PV}.tar.gz -> ${P}.gh.tar.gz"
 
 LICENSE="ISC"
 SLOT="0"

[gentoo-commits] proj/sci:master commit in: dev-python/gffpandas/

[Horea Christian]

commit:     f8914f204ba6afb18ec93b5957a26147d1df6326
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Feb 16 08:06:06 2023 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Feb 16 08:06:16 2023 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=f8914f20

dev-python/gffpandas: update EAPI 7 -> 8, dock package name fix

Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 dev-python/gffpandas/gffpandas-1.2.0.ebuild | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/dev-python/gffpandas/gffpandas-1.2.0.ebuild b/dev-python/gffpandas/gffpandas-1.2.0.ebuild
index 96ed950c1..d6a5d3979 100644
--- a/dev-python/gffpandas/gffpandas-1.2.0.ebuild
+++ b/dev-python/gffpandas/gffpandas-1.2.0.ebuild
@@ -1,7 +1,7 @@
-# Copyright 2021 Gentoo Authors
+# Copyright 2021-2023 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=7
+EAPI=8
 
 PYTHON_COMPAT=( python3_10 )
 
@@ -19,7 +19,7 @@ KEYWORDS="~amd64 ~x86"
 RDEPEND="dev-python/pandas[${PYTHON_USEDEP}]"
 
 distutils_enable_tests pytest
-distutils_enable_sphinx docs/source dev-python/sphinx_rtd_theme
+distutils_enable_sphinx docs/source dev-python/sphinx-rtd-theme
 
 python_prepare_all() {
 	# Do not depend on pytest-runner