From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (2048 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id C87C315800F for ; Fri, 10 Feb 2023 13:53:50 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 1D6C4E07E1; Fri, 10 Feb 2023 13:53:50 +0000 (UTC) Received: from smtp.gentoo.org (mail.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 0A3CFE07E1 for ; Fri, 10 Feb 2023 13:53:50 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 3FF57340D67 for ; Fri, 10 Feb 2023 13:53:49 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id D67B8531 for ; Fri, 10 Feb 2023 13:53:47 +0000 (UTC) From: "Andrew Ammerlaan" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Andrew Ammerlaan" Message-ID: <1676037216.0b262811124d42d89b7f8897a58cbedbd71591b4.andrewammerlaan@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/phusion2/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/phusion2/metadata.xml sci-biology/phusion2/phusion2-3.0.ebuild X-VCS-Directories: sci-biology/phusion2/ X-VCS-Committer: andrewammerlaan X-VCS-Committer-Name: Andrew Ammerlaan X-VCS-Revision: 0b262811124d42d89b7f8897a58cbedbd71591b4 X-VCS-Branch: master Date: Fri, 10 Feb 2023 13:53:47 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 93942513-6d13-4ef9-9b2d-2890f2c84567 X-Archives-Hash: aa0eb03e97620f0523dee62393e6aca1 commit: 0b262811124d42d89b7f8897a58cbedbd71591b4 Author: Andrew Ammerlaan gentoo org> AuthorDate: Fri Feb 10 13:53:36 2023 +0000 Commit: Andrew Ammerlaan gentoo org> CommitDate: Fri Feb 10 13:53:36 2023 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0b262811 sci-biology/phusion2: treeclean, unavailable deps Signed-off-by: Andrew Ammerlaan gentoo.org> sci-biology/phusion2/metadata.xml | 15 ------------ sci-biology/phusion2/phusion2-3.0.ebuild | 39 -------------------------------- 2 files changed, 54 deletions(-) diff --git a/sci-biology/phusion2/metadata.xml b/sci-biology/phusion2/metadata.xml deleted file mode 100644 index 0f267b755..000000000 --- a/sci-biology/phusion2/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ - - - - - mmokrejs@fold.natur.cuni.cz - Martin Mokrejs - - - sci-biology@gentoo.org - Gentoo Biology Project - - - downloads - - diff --git a/sci-biology/phusion2/phusion2-3.0.ebuild b/sci-biology/phusion2/phusion2-3.0.ebuild deleted file mode 100644 index 8c90b0a8f..000000000 --- a/sci-biology/phusion2/phusion2-3.0.ebuild +++ /dev/null @@ -1,39 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -DESCRIPTION="Whole genome shotgun assembler using phrap (for Sanger-based reads)" -HOMEPAGE="https://sourceforge.net/projects/phusion2" -SRC_URI="https://downloads.sourceforge.net/project/${PN}/${P}.tar.gz" - -LICENSE="all-rights-reserved" # temporarily placed value -# from http://genome.cshlp.org/content/13/1/81.full -# Availability -# Phusion is undergoing a rewrite of the code to make this a portable package. It will be made available free of charge to academic sites, but requires licensing for commercial use. For more information please contact the authors. -SLOT="0" -#KEYWORDS="~amd64" -# dependency sci-biology/phrap removed from ::gentoo in f3cfb83adfc5dd1b85d0c9dce5ffbf166b25f4e4 -KEYWORDS="" - -DEPEND="app-shells/tcsh - sys-cluster/openmpi" -RDEPEND="${DEPEND} - sci-biology/phrap - dev-lang/perl" - -# contains bundled ssaha -# file collision with sci-biology/shrimp on /usr/bin/fasta2fastq - -S="${WORKDIR}" - -src_prepare(){ - default - rm -f phusion2 *.o - sed -e 's/^CFLAGS =/# CFLAGS =/' -i Makefile || die -} - -src_install(){ - dobin ctgreads.pl phusion2 - dodoc how_to_make_mates -}