[gentoo-commits] proj/sci:master commit in: sci-biology/phusion2/

["Andrew Ammerlaan" <andrewammerlaan@gentoo.org>]

commit:     0b262811124d42d89b7f8897a58cbedbd71591b4
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Fri Feb 10 13:53:36 2023 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Fri Feb 10 13:53:36 2023 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=0b262811

sci-biology/phusion2: treeclean, unavailable deps

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 sci-biology/phusion2/metadata.xml        | 15 ------------
 sci-biology/phusion2/phusion2-3.0.ebuild | 39 --------------------------------
 2 files changed, 54 deletions(-)

diff --git a/sci-biology/phusion2/metadata.xml b/sci-biology/phusion2/metadata.xml
deleted file mode 100644
index 0f267b755..000000000
--- a/sci-biology/phusion2/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-	<upstream>
-		<remote-id type="sourceforge">downloads</remote-id>
-	</upstream>
-</pkgmetadata>

diff --git a/sci-biology/phusion2/phusion2-3.0.ebuild b/sci-biology/phusion2/phusion2-3.0.ebuild
deleted file mode 100644
index 8c90b0a8f..000000000
--- a/sci-biology/phusion2/phusion2-3.0.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-DESCRIPTION="Whole genome shotgun assembler using phrap (for Sanger-based reads)"
-HOMEPAGE="https://sourceforge.net/projects/phusion2"
-SRC_URI="https://downloads.sourceforge.net/project/${PN}/${P}.tar.gz"
-
-LICENSE="all-rights-reserved" # temporarily placed value
-# from http://genome.cshlp.org/content/13/1/81.full
-# Availability
-# Phusion is undergoing a rewrite of the code to make this a portable package. It will be made available free of charge to academic sites, but requires licensing for commercial use. For more information please contact the authors.
-SLOT="0"
-#KEYWORDS="~amd64"
-# dependency sci-biology/phrap removed from ::gentoo in f3cfb83adfc5dd1b85d0c9dce5ffbf166b25f4e4
-KEYWORDS=""
-
-DEPEND="app-shells/tcsh
-	sys-cluster/openmpi"
-RDEPEND="${DEPEND}
-	sci-biology/phrap
-	dev-lang/perl"
-
-# contains bundled ssaha
-# file collision with sci-biology/shrimp on /usr/bin/fasta2fastq
-
-S="${WORKDIR}"
-
-src_prepare(){
-	default
-	rm -f phusion2 *.o
-	sed -e 's/^CFLAGS =/# CFLAGS =/' -i Makefile || die
-}
-
-src_install(){
-	dobin ctgreads.pl phusion2
-	dodoc how_to_make_mates
-}