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From: "Ulrich Müller" <ulm@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] repo/gentoo:master commit in: licenses/
Date: Fri, 27 Jan 2023 20:48:22 +0000 (UTC)	[thread overview]
Message-ID: <1674852493.2e30a9e81001eec84edf07ba21be3bc9a3c034d6.ulm@gentoo> (raw)

commit:     2e30a9e81001eec84edf07ba21be3bc9a3c034d6
Author:     Ulrich Müller <ulm <AT> gentoo <DOT> org>
AuthorDate: Fri Jan 27 20:47:26 2023 +0000
Commit:     Ulrich Müller <ulm <AT> gentoo <DOT> org>
CommitDate: Fri Jan 27 20:48:13 2023 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=2e30a9e8

licenses: Remove unused phrap

Signed-off-by: Ulrich Müller <ulm <AT> gentoo.org>

 licenses/phrap | 210 ---------------------------------------------------------
 1 file changed, 210 deletions(-)

diff --git a/licenses/phrap b/licenses/phrap
deleted file mode 100644
index 0e1df110ade2..000000000000
--- a/licenses/phrap
+++ /dev/null
@@ -1,210 +0,0 @@
-ACADEMIC USER AGREEMENT
-
-Please read the entire agreement, fill in the information in the
-indicated positions (such as "NAME:"), and return the entire document
-to the indicated people.  Please send the document as the message--not
-as an attachment.
-
-Phrap:  A program for assembling DNA sequence data.
-
-Swat:  A program for searching one or more DNA or protein query sequences
-against a sequence database, using (an efficient implementation of) the
-Smith-Waterman-Gotoh algorithm.
-
-Cross_Match:  A general-purpose utility based on Swat for comparing any
-two sets of (long or short) DNA sequences.
-
-Phred:  A program that reads DNA sequencer trace data, calls bases,
-assigns quality values to the bases, and writes the base calls and quality
-values to output files.
-
-Consed:  A program for viewing and editing Phrap assemblies.
-
-To receive any of these programs you will need to agree to the following
-conditions. They should be taken seriously!
-
-1) You agree to read the documentation.  We welcome feedback on any
-inaccuracies.
-
-2) You agree to report any bugs to us.  (To fix bugs, we will need
-from you a dataset and a procedure that reproduces the problem; but do
-not send datasets without first emailing us to describe the nature of
-the bug.)
-
-3) You agree not to make the programs (including source code,
-executables, or any part thereof, in modified or unmodified form)
-available to anyone outside your group, and not to put them where they
-may be accessible to outside individuals without your direct knowledge
-(e.g. on a computer to which people outside your group have login
-privileges).  The documentation however may be freely distributed.
-Refer any requests for the programs to the authors.  If you are
-operating a computer facility which provides access to several
-independent investigators, you agree to set the permissions on the
-executables and source code to allow execute but not read access, so
-that the programs may not be copied. Investigators who want copies of
-the software for their own use must return a separate copy of this
-agreement.
-
-4) You agree not to use the programs for any commercial purpose,
-including but not limited to commercially restricted sequencing
-(defined as sequencing for which a company retains patenting or
-licensing rights regarding the sequence, or the right to restrict or
-delay dissemination of the sequence; with the sole exception that
-sequencing is not considered to be commercially restricted if it is
-federally funded and the investigators adopt the data release policies
-endorsed at the Wellcome Trust-sponsored Bermuda meeting,
-i.e. immediate release of data as it is generated).
- [If you wish to obtain the software for commercially restricted
-sequencing or any other commercial purposes, you will need to execute
-a separate licensing agreement with the University of Washington and
-pay a fee. In that case please contact:
-
-Lisa Heinz
-University of Washington TechTransfer, Digital Ventures
-Box 354990
-4311-11th Avenue NE, Suite 500
-Seattle, WA  98105-4608
-
-http://depts.washington.edu/techtran
-
-206-616-3451  FAX: 206-616-3322
-swxfr@u.washington.edu
-
-Do not contact her if the academic license applies.]
-
-5) You acknowledge that the software is experimental in nature and is
-supplied "AS IS", without obligation by the authors or the University
-of Washington to provide accompanying services or support.  The entire
-risk as to the quality and performance of the Software is with you.
-UW AND THE AUTHORS EXPRESSLY DISCLAIM ANY AND ALL WARRANTIES
-REGARDING THE SOFTWARE, WHETHER EXPRESS OR IMPLIED, INCLUDING BUT NOT
-LIMITED TO WARRANTIES PERTAINING TO MERCHANTABILITY OR FITNESS FOR A
-PARTICULAR PURPOSE.
-
-6) All members of your group with access to the software agree to the
-same conditions.
-
-
-
-Having read the above, if you are still interested in obtaining the
-programs, please return a copy of this entire message (which MUST be
-included so that it is clear what you are agreeing to) by email
-together with the following information:
-
-NAME: Your name in first name/last name order.
-
-NAME:  
-
-
-Example:
-NAME: John Dracula
-(Please do not use all capitals such as John DRACULA)
-
-ACKNOWLEDGEMENT: An acknowledgement that you and the members of your
-group agree to these conditions.
-
-ACKNOWLEDGEMENT:
-
-Example:
-ACKNOWLEDGEMENT: I agree to the license.
-
-PROGRAMS: Which programs you want (phrap,cross_match, and swat are
-distributed together). You must cc the message to each appropriate
-individual (Brent Ewing, David Gordon, and/or Phil Green) at the email
-addresses below so that they will know to send you the appropriate
-program.
-
-PROGRAMS:
-
-Example:
-PROGRAMS: phred, phrap, consed
-
-INSTITUTION: Your academic or government institution (give full name,
-not abbreviation)
-
-INSTITUTION: 
-
-Example:
-INSTITUTION:  University of Lower Transylvania
-
-DEPARTMENT: Your department
-
-DEPARTMENT:
-
-Example:
-DEPARTMENT:  Department of Hematology
-
-EMAIL: Your email address for all future correspondence. Ideally this
-should be a Unix computer running a generic mail program, since
-several of the programs are sent as uuencoded files which may be
-corrupted by some mail programs.
-  If this address is not at the institution & department listed above,
-please explain the discrepancy.
-
-EMAIL: 
-
-Example:
-EMAIL: john.dracula@utrans.edu
-
-OS: (Consed requestors only) Which platform(s) you want Consed for:
-solaris 2.5.1, solaris 2.6, solaris 2.7 (solaris 7), solaris 8,
-solaris 9, digital unix 4.0 (or better), hp-ux 11.x, sgi irix 6.2,
-6.3, 6.4, or 6.5, linux (normal 32 bit) (Redhat 7.1-1 or better),
-linux (Itanium), linux (AMD64), ibm aix 5.2 (or better), macosx 10.2
-(Darwin kernel 6.0) (or better), or solaris-intel (2.8 or better).
-
-OS:
-
-Example:
-OS: hpux
-
-Note: Consed is not available for PC's running Windows, XP, NT, or
-2000.
-
-IP: (Consed requestors only) The ip address of the computer on which
-you will be running a web browser to download consed.  This does not
-have to be the same computer as the one on which you will run consed.
-Please view page
-http://bozeman.mbt.washington.edu/consed/find_ip_address.html
-which will tell you what my computer thinks is your ip address.
-
-(Even if you think you know your ip address, firewalls and proxies can
-cause your browser to transmit a different ip address, and thus my
-webserver would deny you access to consed.  So it would be a good idea
-to view the page above and send me the ip address it shows, even if
-this isn't your real ip address.)
-
-IP:
-
-Example:
-IP: 123.49.74.80
-
-
-If you want Consed/Autofinish, you must include OS and IP (above).
-Consed cannot be obtained without them.
-
-Please return this entire agreement so it is clear what you are
-agreeing to.
-
-Please send all of this, including the agreement, as part of the
-email message--not as an attachment.  
-
-Send it to each of the relevant individuals below:
-
-Contacts for obtaining the programs and for questions, bug reports,
-suggestions:
-
-      Phrap/cross_match/swat:  Phil Green, phg (at) u.washington.edu
-      Phred: Brent Ewing, bge (at) u.washington.edu
-      Consed: David Gordon, gordon (at) genome.washington.edu
-
-where the " (at) " is replaced by "@".
-
-It can take up to 2 weeks for a license application to be processed,
-so please be patient.
-
-
-
-
-
-


             reply	other threads:[~2023-01-27 20:48 UTC|newest]

Thread overview: 280+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2023-01-27 20:48 Ulrich Müller [this message]
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2025-04-02 17:46 [gentoo-commits] repo/gentoo:master commit in: licenses/ Ulrich Müller
2025-03-24  2:02 Sam James
2025-02-19 22:21 Sam James
2025-01-20 13:52 Ulrich Müller
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2021-03-30  7:25 Joonas Niilola
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2020-09-16  8:37 Marek Szuba
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2019-12-25 20:48 Andreas K. Hüttel
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2018-11-16 23:01 Patrice Clement
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2018-07-11 11:17 Tony Vroon
2018-07-11  8:24 Tony Vroon
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2018-06-23 21:20 Ulrich Müller
2018-06-22 18:49 Michał Górny
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2018-06-22  5:09 Ulrich Müller
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2018-06-08 13:01 Alexey Shvetsov
2018-05-01  7:48 Michał Górny
2018-05-01  7:48 Michał Górny
2018-04-21  9:38 Ulrich Müller
2018-04-20 11:53 Michał Górny
2018-04-18  8:00 Michał Górny
2018-04-18  8:00 Michał Górny
2018-04-18  8:00 Michał Górny
2018-04-09  2:18 Tim Harder
2018-03-29  9:17 Michał Górny
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2018-03-24  8:56 Michał Górny
2018-03-05 19:21 Ulrich Müller
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2018-03-05 19:21 Ulrich Müller
2018-03-05 19:21 Ulrich Müller
2018-03-01 20:28 Jeroen Roovers
2018-01-23 20:06 Alfredo Tupone
2017-12-17 22:15 James Le Cuirot
2017-12-10 21:46 James Le Cuirot
2017-12-10 21:46 James Le Cuirot
2017-11-20 20:56 Alfredo Tupone
2017-11-19 20:48 Alfredo Tupone
2017-11-14  8:20 Ulrich Müller
2017-11-10 21:56 Ulrich Müller
2017-10-29  9:15 Ulrich Müller
2017-10-26 10:26 James Le Cuirot
2017-10-14  9:45 Ulrich Müller
2017-09-15 17:43 Patrick McLean
2017-09-06  6:42 Ulrich Müller
2017-09-06  6:41 Ulrich Müller
2017-08-30 19:14 Patrick McLean
2017-08-18 14:08 Ulrich Müller
2017-07-27 18:51 Sebastien Fabbro
2017-07-11 20:01 Michał Górny
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2017-06-27 10:58 Marek Szuba
2017-05-17 16:22 William Hubbs
2017-05-16 17:11 Michał Górny
2017-05-07 17:36 Ulrich Müller
2017-04-27 21:41 James Le Cuirot
2017-04-27 21:41 James Le Cuirot
2017-04-27 21:41 James Le Cuirot
2017-04-24  7:53 Ulrich Müller
2017-04-20  9:06 Ulrich Müller
2017-04-19 19:46 Michał Górny
2017-04-19 14:46 Andreas Hüttel
2017-04-14 16:20 Ulrich Müller
2017-04-13 12:33 James Le Cuirot
2017-04-09  7:15 Ulrich Müller
2017-03-19 13:05 Ulrich Müller
2017-03-06  9:24 Mikhail Pukhlikov
2017-02-27 10:59 Ulrich Müller
2017-02-27 10:41 Ulrich Müller
2017-02-25 16:24 Ulrich Müller
2017-02-01  8:00 Ulrich Müller
2017-01-24 18:24 Ettore Di Giacinto
2017-01-14 17:22 Ulrich Müller
2016-12-29  4:12 Göktürk Yüksek
2016-12-17 13:33 José María Alonso
2016-12-01 12:33 José María Alonso
2016-12-01  0:08 Göktürk Yüksek
2016-12-01  0:08 Göktürk Yüksek
2016-12-01  0:08 Göktürk Yüksek
2016-12-01  0:08 Göktürk Yüksek
2016-11-13  9:56 Ulrich Müller
2016-11-12  1:14 Jonathan Vasquez
2016-10-27  9:28 Michał Górny
2016-10-27  9:28 Michał Górny
2016-10-18 16:59 Ulrich Müller
2016-10-12 10:18 Austin English
2016-10-11  7:49 David Seifert
2016-10-02 21:12 Ulrich Müller
2016-09-09 13:03 Wolfram Schlich
2016-08-12 20:41 Ulrich Müller
2016-08-12 20:41 Ulrich Müller
2016-08-12 19:33 Thomas Deutschmann
2016-08-12 19:33 Thomas Deutschmann
2016-06-25 10:24 Ulrich Müller
2016-06-19 17:38 Ulrich Müller
2016-05-20 15:05 Ulrich Müller
2016-05-20 14:11 Ulrich Müller
2016-05-20 13:24 Ian Delaney
2016-05-01 20:21 Ulrich Müller
2016-04-09 21:02 Andreas Hüttel
2016-04-07 22:39 Chí-Thanh Christopher Nguyễn
2016-03-24 12:57 Ulrich Müller
2016-03-19 21:32 Patrice Clement
2015-12-29 10:02 Justin Lecher
2015-12-27 10:08 Ian Delaney
2015-12-14 16:51 Richard Yao
2015-12-09 15:10 Justin Lecher
2015-11-29  3:35 Steve Arnold
2015-11-25  7:36 Ulrich Müller
2015-10-31 16:21 Ulrich Müller
2015-10-24 11:32 Alexis Ballier
2015-09-16  8:59 Justin Lecher
2015-09-16  8:53 Justin Lecher
2015-09-11 19:37 Patrice Clement
2015-09-07 12:31 Patrice Clement
2015-09-03  6:07 Justin Lecher
2015-08-27 22:59 Ulrich Müller
2015-08-19 23:16 Julian Ospald
2015-08-09  7:31 Ulrich Müller

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