* [gentoo-commits] proj/sci:master commit in: dev-python/pynwb/
@ 2022-01-31 8:19 Horea Christian
0 siblings, 0 replies; 22+ messages in thread
From: Horea Christian @ 2022-01-31 8:19 UTC (permalink / raw
To: gentoo-commits
commit: e82aa77838def38e866bba6d9eaae5d60d4577c9
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon Jan 31 08:19:05 2022 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon Jan 31 08:19:05 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e82aa778
dev-python/pynwb: purged Changelog
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/pynwb/ChangeLog | 6 ------
1 file changed, 6 deletions(-)
diff --git a/dev-python/pynwb/ChangeLog b/dev-python/pynwb/ChangeLog
deleted file mode 100644
index 1eee46e49..000000000
--- a/dev-python/pynwb/ChangeLog
+++ /dev/null
@@ -1,6 +0,0 @@
-*pynwb-2.0.0_p0 (31 Jan 2022)
-
- 31 Jan 2022; <chymera@gentoo.org> +files/pynwb-2.0.0-versions.patch,
- +pynwb-2.0.0_p0.ebuild, pynwb-2.0.0.ebuild:
- dev-python/pynwb: version bump and test skip linking skipped test reports on
- upstream issue treacker
^ permalink raw reply related [flat|nested] 22+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/pynwb/
@ 2022-02-01 15:31 Horea Christian
0 siblings, 0 replies; 22+ messages in thread
From: Horea Christian @ 2022-02-01 15:31 UTC (permalink / raw
To: gentoo-commits
commit: 35bd9890236d3d3309e966f34048c4a0012d9b16
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Feb 1 15:31:02 2022 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Feb 1 15:31:02 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=35bd9890
dev-python/pynwb: flag assumed disabled if not present
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/pynwb/pynwb-2.0.0.ebuild | 2 +-
dev-python/pynwb/pynwb-2.0.0_p0.ebuild | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/dev-python/pynwb/pynwb-2.0.0.ebuild b/dev-python/pynwb/pynwb-2.0.0.ebuild
index b0294a4e0..d9afd62e7 100644
--- a/dev-python/pynwb/pynwb-2.0.0.ebuild
+++ b/dev-python/pynwb/pynwb-2.0.0.ebuild
@@ -15,7 +15,7 @@ LICENSE="BSD"
KEYWORDS="~amd64 ~x86"
RDEPEND="
- sci-libs/hdf5[ros3]
+ sci-libs/hdf5[ros3(-)]
dev-python/hdmf[${PYTHON_USEDEP}]
dev-python/h5py[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
diff --git a/dev-python/pynwb/pynwb-2.0.0_p0.ebuild b/dev-python/pynwb/pynwb-2.0.0_p0.ebuild
index fba3e6319..25672015c 100644
--- a/dev-python/pynwb/pynwb-2.0.0_p0.ebuild
+++ b/dev-python/pynwb/pynwb-2.0.0_p0.ebuild
@@ -18,7 +18,7 @@ LICENSE="BSD"
KEYWORDS="~amd64 ~x86"
RDEPEND="
- sci-libs/hdf5[ros3]
+ sci-libs/hdf5[ros3(-)]
dev-python/hdmf[${PYTHON_USEDEP}]
dev-python/h5py[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
^ permalink raw reply related [flat|nested] 22+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/pynwb/
@ 2022-07-12 14:41 Horea Christian
0 siblings, 0 replies; 22+ messages in thread
From: Horea Christian @ 2022-07-12 14:41 UTC (permalink / raw
To: gentoo-commits
commit: 872c4f1ee5cfda29b12acc7ed09a923502d25484
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Jul 12 14:40:13 2022 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jul 12 14:40:13 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=872c4f1e
dev-python/pynwb: version bump
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/pynwb/metadata.xml | 4 ++++
dev-python/pynwb/pynwb-2.0.1.ebuild | 39 +++++++++++++++++++++++++++++++++++++
2 files changed, 43 insertions(+)
diff --git a/dev-python/pynwb/metadata.xml b/dev-python/pynwb/metadata.xml
index 99512b574..1e30097b2 100644
--- a/dev-python/pynwb/metadata.xml
+++ b/dev-python/pynwb/metadata.xml
@@ -17,4 +17,8 @@
data, focused on the dynamics of groups of neurons measured under a
large range of experimental conditions.
</longdescription>
+ <upstream>
+ <remote-id type="pypi">pynwb</remote-id>
+ <remote-id type="github">NeurodataWithoutBorders/pynwb</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/dev-python/pynwb/pynwb-2.0.1.ebuild b/dev-python/pynwb/pynwb-2.0.1.ebuild
new file mode 100644
index 000000000..9f84bdb80
--- /dev/null
+++ b/dev-python/pynwb/pynwb-2.0.1.ebuild
@@ -0,0 +1,39 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=setuptools
+PYTHON_COMPAT=( python3_{8..10} )
+inherit distutils-r1
+
+DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
+HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"
+SRC_URI="https://github.com/NeurodataWithoutBorders/pynwb/releases/download/${PV}/${P}.tar.gz"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~x86"
+
+RDEPEND="
+ sci-libs/hdf5[ros3(-)]
+ dev-python/hdmf[${PYTHON_USEDEP}]
+ dev-python/h5py[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/pandas[${PYTHON_USEDEP}]
+ dev-python/python-dateutil[${PYTHON_USEDEP}]
+ "
+BDEPEND=""
+
+EPYTEST_DESELECT=(
+ # Reported upsream:
+ # https://github.com/dandi/dandischema/issues/87
+ tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached
+ tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_bad_ns
+ tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_hdmf_common
+ tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_ignore
+ tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache
+ tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache_bad_ns
+)
+
+distutils_enable_tests pytest
^ permalink raw reply related [flat|nested] 22+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/pynwb/
@ 2022-07-12 14:42 Horea Christian
0 siblings, 0 replies; 22+ messages in thread
From: Horea Christian @ 2022-07-12 14:42 UTC (permalink / raw
To: gentoo-commits
commit: e77189d1019c38f6df1b25b2da53f7669c92d295
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Jul 12 14:41:51 2022 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jul 12 14:41:51 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e77189d1
dev-python/pynwb: dropped ebuild with missing source
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/pynwb/pynwb-2.0.0_p0.ebuild | 47 ----------------------------------
1 file changed, 47 deletions(-)
diff --git a/dev-python/pynwb/pynwb-2.0.0_p0.ebuild b/dev-python/pynwb/pynwb-2.0.0_p0.ebuild
deleted file mode 100644
index 25672015c..000000000
--- a/dev-python/pynwb/pynwb-2.0.0_p0.ebuild
+++ /dev/null
@@ -1,47 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{8..10} )
-inherit distutils-r1
-
-MY_PV="${PV/_p/.post}.dev5"
-MY_P="${PN}-${MY_PV}"
-
-DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
-HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"
-SRC_URI="https://github.com/NeurodataWithoutBorders/pynwb/releases/download/latest/${MY_P}.tar.gz"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="
- sci-libs/hdf5[ros3(-)]
- dev-python/hdmf[${PYTHON_USEDEP}]
- dev-python/h5py[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/pandas[${PYTHON_USEDEP}]
- dev-python/python-dateutil[${PYTHON_USEDEP}]
- "
-BDEPEND=""
-
-PATCHES=(
- "${FILESDIR}/${PN}-2.0.0-versions.patch"
- )
-
-S="${WORKDIR}/${MY_P}"
-
-EPYTEST_DESELECT=(
- # Reported upsream
- # https://github.com/dandi/dandischema/issues/87
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_bad_ns
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_hdmf_common
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_ignore
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache_bad_ns
-)
-
-distutils_enable_tests pytest
^ permalink raw reply related [flat|nested] 22+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/pynwb/
@ 2022-07-12 15:29 Horea Christian
0 siblings, 0 replies; 22+ messages in thread
From: Horea Christian @ 2022-07-12 15:29 UTC (permalink / raw
To: gentoo-commits
commit: 75cb88a8a0d3dbc52dee2df510b2a84236dcafee
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Jul 12 15:29:11 2022 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jul 12 15:29:11 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=75cb88a8
dev-python/pynwb: version bump, fixed dependency versions
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/pynwb/pynwb-2.0.0.ebuild | 4 ++--
dev-python/pynwb/pynwb-2.0.1.ebuild | 6 +++---
dev-python/pynwb/{pynwb-2.0.1.ebuild => pynwb-2.1.0.ebuild} | 6 +++---
3 files changed, 8 insertions(+), 8 deletions(-)
diff --git a/dev-python/pynwb/pynwb-2.0.0.ebuild b/dev-python/pynwb/pynwb-2.0.0.ebuild
index d9afd62e7..e133d027b 100644
--- a/dev-python/pynwb/pynwb-2.0.0.ebuild
+++ b/dev-python/pynwb/pynwb-2.0.0.ebuild
@@ -16,7 +16,7 @@ KEYWORDS="~amd64 ~x86"
RDEPEND="
sci-libs/hdf5[ros3(-)]
- dev-python/hdmf[${PYTHON_USEDEP}]
+ <dev-python/hdmf-3.3.2[${PYTHON_USEDEP}]
dev-python/h5py[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/pandas[${PYTHON_USEDEP}]
@@ -30,7 +30,7 @@ PATCHES=(
EPYTEST_DESELECT=(
# Reported upsream:
- # https://github.com/dandi/dandischema/issues/87
+ # https://github.com/NeurodataWithoutBorders/pynwb/issues/1425
tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached
tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_bad_ns
tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_hdmf_common
diff --git a/dev-python/pynwb/pynwb-2.0.1.ebuild b/dev-python/pynwb/pynwb-2.0.1.ebuild
index 9f84bdb80..3fe21370f 100644
--- a/dev-python/pynwb/pynwb-2.0.1.ebuild
+++ b/dev-python/pynwb/pynwb-2.0.1.ebuild
@@ -9,7 +9,7 @@ inherit distutils-r1
DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"
-SRC_URI="https://github.com/NeurodataWithoutBorders/pynwb/releases/download/${PV}/${P}.tar.gz"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
SLOT="0"
LICENSE="BSD"
@@ -17,7 +17,7 @@ KEYWORDS="~amd64 ~x86"
RDEPEND="
sci-libs/hdf5[ros3(-)]
- dev-python/hdmf[${PYTHON_USEDEP}]
+ <dev-python/hdmf-3.3.2[${PYTHON_USEDEP}]
dev-python/h5py[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/pandas[${PYTHON_USEDEP}]
@@ -27,7 +27,7 @@ BDEPEND=""
EPYTEST_DESELECT=(
# Reported upsream:
- # https://github.com/dandi/dandischema/issues/87
+ # https://github.com/NeurodataWithoutBorders/pynwb/issues/1425
tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached
tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_bad_ns
tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_hdmf_common
diff --git a/dev-python/pynwb/pynwb-2.0.1.ebuild b/dev-python/pynwb/pynwb-2.1.0.ebuild
similarity index 86%
copy from dev-python/pynwb/pynwb-2.0.1.ebuild
copy to dev-python/pynwb/pynwb-2.1.0.ebuild
index 9f84bdb80..a53c4bbb0 100644
--- a/dev-python/pynwb/pynwb-2.0.1.ebuild
+++ b/dev-python/pynwb/pynwb-2.1.0.ebuild
@@ -9,7 +9,7 @@ inherit distutils-r1
DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"
-SRC_URI="https://github.com/NeurodataWithoutBorders/pynwb/releases/download/${PV}/${P}.tar.gz"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
SLOT="0"
LICENSE="BSD"
@@ -17,7 +17,7 @@ KEYWORDS="~amd64 ~x86"
RDEPEND="
sci-libs/hdf5[ros3(-)]
- dev-python/hdmf[${PYTHON_USEDEP}]
+ >=dev-python/hdmf-3.3.2[${PYTHON_USEDEP}]
dev-python/h5py[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/pandas[${PYTHON_USEDEP}]
@@ -27,7 +27,7 @@ BDEPEND=""
EPYTEST_DESELECT=(
# Reported upsream:
- # https://github.com/dandi/dandischema/issues/87
+ # https://github.com/NeurodataWithoutBorders/pynwb/issues/1425
tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached
tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_bad_ns
tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_hdmf_common
^ permalink raw reply related [flat|nested] 22+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/pynwb/
@ 2022-11-02 21:10 Horea Christian
0 siblings, 0 replies; 22+ messages in thread
From: Horea Christian @ 2022-11-02 21:10 UTC (permalink / raw
To: gentoo-commits
commit: 9ab6b069325b69e6833bdb7c517ae5acf3124e38
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Wed Nov 2 21:10:04 2022 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Wed Nov 2 21:10:04 2022 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9ab6b069
dev-python/pynwb: drop 2.0.0
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/pynwb/pynwb-2.0.0.ebuild | 46 -------------------------------------
1 file changed, 46 deletions(-)
diff --git a/dev-python/pynwb/pynwb-2.0.0.ebuild b/dev-python/pynwb/pynwb-2.0.0.ebuild
deleted file mode 100644
index e133d027b..000000000
--- a/dev-python/pynwb/pynwb-2.0.0.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{8..10} )
-inherit distutils-r1
-
-DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
-HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"
-SRC_URI="https://github.com/NeurodataWithoutBorders/pynwb/releases/download/${PV}/${P}.tar.gz"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="
- sci-libs/hdf5[ros3(-)]
- <dev-python/hdmf-3.3.2[${PYTHON_USEDEP}]
- dev-python/h5py[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/pandas[${PYTHON_USEDEP}]
- dev-python/python-dateutil[${PYTHON_USEDEP}]
- "
-BDEPEND=""
-
-PATCHES=(
- "${FILESDIR}/${P}-versions.patch"
- )
-
-EPYTEST_DESELECT=(
- # Reported upsream:
- # https://github.com/NeurodataWithoutBorders/pynwb/issues/1425
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_bad_ns
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_hdmf_common
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_ignore
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache_bad_ns
- # Reported upstream and fixed in newer version:
- # https://github.com/NeurodataWithoutBorders/pynwb/issues/1412#issuecomment-934153799
- tests/integration/ros3/test_ros3.py::TestRos3Streaming::test_dandi_read
- tests/integration/ros3/test_ros3.py::TestRos3Streaming::test_read
-)
-
-distutils_enable_tests pytest
^ permalink raw reply related [flat|nested] 22+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/pynwb/
@ 2023-01-12 9:49 Horea Christian
0 siblings, 0 replies; 22+ messages in thread
From: Horea Christian @ 2023-01-12 9:49 UTC (permalink / raw
To: gentoo-commits
commit: 763713a088a11b16c7f00b2f391f4cdaafbf7504
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Jan 12 09:41:55 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Jan 12 09:48:37 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=763713a0
dev-python/pynwb: fixing hd5 dependency ros3 USE flag requirement
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/pynwb/pynwb-2.0.1.ebuild | 4 ++--
dev-python/pynwb/pynwb-2.1.0-r1.ebuild | 4 ++--
dev-python/pynwb/pynwb-2.2.0.ebuild | 4 ++--
3 files changed, 6 insertions(+), 6 deletions(-)
diff --git a/dev-python/pynwb/pynwb-2.0.1.ebuild b/dev-python/pynwb/pynwb-2.0.1.ebuild
index 3fe21370f..d713c6bcb 100644
--- a/dev-python/pynwb/pynwb-2.0.1.ebuild
+++ b/dev-python/pynwb/pynwb-2.0.1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2022 Gentoo Authors
+# Copyright 1999-2023 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
@@ -16,7 +16,7 @@ LICENSE="BSD"
KEYWORDS="~amd64 ~x86"
RDEPEND="
- sci-libs/hdf5[ros3(-)]
+ >=sci-libs/hdf5-1.12.2[ros3(+)]
<dev-python/hdmf-3.3.2[${PYTHON_USEDEP}]
dev-python/h5py[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
diff --git a/dev-python/pynwb/pynwb-2.1.0-r1.ebuild b/dev-python/pynwb/pynwb-2.1.0-r1.ebuild
index c24dae23a..72cd7a3c7 100644
--- a/dev-python/pynwb/pynwb-2.1.0-r1.ebuild
+++ b/dev-python/pynwb/pynwb-2.1.0-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2022 Gentoo Authors
+# Copyright 1999-2023 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
@@ -16,7 +16,7 @@ LICENSE="BSD"
KEYWORDS="~amd64 ~x86"
RDEPEND="
- sci-libs/hdf5[ros3(-)]
+ >=sci-libs/hdf5-1.12.2[ros3(+)]
>=dev-python/hdmf-3.3.2[${PYTHON_USEDEP}]
dev-python/h5py[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
diff --git a/dev-python/pynwb/pynwb-2.2.0.ebuild b/dev-python/pynwb/pynwb-2.2.0.ebuild
index 6ea595a8f..b10e32480 100644
--- a/dev-python/pynwb/pynwb-2.2.0.ebuild
+++ b/dev-python/pynwb/pynwb-2.2.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2022 Gentoo Authors
+# Copyright 1999-2023 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
@@ -16,7 +16,7 @@ LICENSE="BSD"
KEYWORDS="~amd64 ~x86"
RDEPEND="
- sci-libs/hdf5[ros3(-)]
+ >=sci-libs/hdf5-1.12.2[ros3(+)]
>=dev-python/hdmf-3.3.2[${PYTHON_USEDEP}]
dev-python/h5py[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
^ permalink raw reply related [flat|nested] 22+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/pynwb/
@ 2023-01-12 10:13 Horea Christian
0 siblings, 0 replies; 22+ messages in thread
From: Horea Christian @ 2023-01-12 10:13 UTC (permalink / raw
To: gentoo-commits
commit: 8489010298163161a2b45a13c70016fb9e926b48
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Jan 12 10:12:59 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Jan 12 10:12:59 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=84890102
dev-python/pynwb: fully deprecated ros3 flag of hdf5 dep
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/pynwb/{pynwb-2.0.1.ebuild => pynwb-2.0.1-r1.ebuild} | 2 +-
dev-python/pynwb/{pynwb-2.1.0-r1.ebuild => pynwb-2.1.0-r2.ebuild} | 2 +-
dev-python/pynwb/{pynwb-2.2.0.ebuild => pynwb-2.2.0-r1.ebuild} | 2 +-
3 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/dev-python/pynwb/pynwb-2.0.1.ebuild b/dev-python/pynwb/pynwb-2.0.1-r1.ebuild
similarity index 97%
rename from dev-python/pynwb/pynwb-2.0.1.ebuild
rename to dev-python/pynwb/pynwb-2.0.1-r1.ebuild
index d713c6bcb..719e308b3 100644
--- a/dev-python/pynwb/pynwb-2.0.1.ebuild
+++ b/dev-python/pynwb/pynwb-2.0.1-r1.ebuild
@@ -16,7 +16,7 @@ LICENSE="BSD"
KEYWORDS="~amd64 ~x86"
RDEPEND="
- >=sci-libs/hdf5-1.12.2[ros3(+)]
+ >=sci-libs/hdf5-1.12.2
<dev-python/hdmf-3.3.2[${PYTHON_USEDEP}]
dev-python/h5py[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
diff --git a/dev-python/pynwb/pynwb-2.1.0-r1.ebuild b/dev-python/pynwb/pynwb-2.1.0-r2.ebuild
similarity index 97%
rename from dev-python/pynwb/pynwb-2.1.0-r1.ebuild
rename to dev-python/pynwb/pynwb-2.1.0-r2.ebuild
index 72cd7a3c7..353cb56b8 100644
--- a/dev-python/pynwb/pynwb-2.1.0-r1.ebuild
+++ b/dev-python/pynwb/pynwb-2.1.0-r2.ebuild
@@ -16,7 +16,7 @@ LICENSE="BSD"
KEYWORDS="~amd64 ~x86"
RDEPEND="
- >=sci-libs/hdf5-1.12.2[ros3(+)]
+ >=sci-libs/hdf5-1.12.2
>=dev-python/hdmf-3.3.2[${PYTHON_USEDEP}]
dev-python/h5py[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
diff --git a/dev-python/pynwb/pynwb-2.2.0.ebuild b/dev-python/pynwb/pynwb-2.2.0-r1.ebuild
similarity index 98%
rename from dev-python/pynwb/pynwb-2.2.0.ebuild
rename to dev-python/pynwb/pynwb-2.2.0-r1.ebuild
index b10e32480..cc5379580 100644
--- a/dev-python/pynwb/pynwb-2.2.0.ebuild
+++ b/dev-python/pynwb/pynwb-2.2.0-r1.ebuild
@@ -16,7 +16,7 @@ LICENSE="BSD"
KEYWORDS="~amd64 ~x86"
RDEPEND="
- >=sci-libs/hdf5-1.12.2[ros3(+)]
+ >=sci-libs/hdf5-1.12.2
>=dev-python/hdmf-3.3.2[${PYTHON_USEDEP}]
dev-python/h5py[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
^ permalink raw reply related [flat|nested] 22+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/pynwb/
@ 2023-01-30 11:54 Horea Christian
0 siblings, 0 replies; 22+ messages in thread
From: Horea Christian @ 2023-01-30 11:54 UTC (permalink / raw
To: gentoo-commits
commit: 1c183aee3e1acb043ebcee0de027835d9dbe40a5
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon Jan 30 11:53:59 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon Jan 30 11:53:59 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=1c183aee
dev-python/pynwb: drop 2.0.1-r1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/pynwb/pynwb-2.0.1-r1.ebuild | 39 ----------------------------------
1 file changed, 39 deletions(-)
diff --git a/dev-python/pynwb/pynwb-2.0.1-r1.ebuild b/dev-python/pynwb/pynwb-2.0.1-r1.ebuild
deleted file mode 100644
index 3d3e0cbb9..000000000
--- a/dev-python/pynwb/pynwb-2.0.1-r1.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_10 )
-inherit distutils-r1
-
-DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
-HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="
- >=sci-libs/hdf5-1.12.2
- <dev-python/hdmf-3.3.2[${PYTHON_USEDEP}]
- dev-python/h5py[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/pandas[${PYTHON_USEDEP}]
- dev-python/python-dateutil[${PYTHON_USEDEP}]
- "
-BDEPEND=""
-
-EPYTEST_DESELECT=(
- # Reported upsream:
- # https://github.com/NeurodataWithoutBorders/pynwb/issues/1425
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_bad_ns
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_hdmf_common
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_ignore
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache_bad_ns
-)
-
-distutils_enable_tests pytest
^ permalink raw reply related [flat|nested] 22+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/pynwb/
@ 2023-03-22 19:43 Horea Christian
0 siblings, 0 replies; 22+ messages in thread
From: Horea Christian @ 2023-03-22 19:43 UTC (permalink / raw
To: gentoo-commits
commit: 18fa2218a3c92cf5650c1a65ed0ef12eae76c127
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Wed Mar 22 19:43:52 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Wed Mar 22 19:43:52 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=18fa2218
dev-python/pynwb: enable py3.11
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/pynwb/pynwb-2.1.0-r2.ebuild | 2 +-
dev-python/pynwb/pynwb-2.2.0-r1.ebuild | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/dev-python/pynwb/pynwb-2.1.0-r2.ebuild b/dev-python/pynwb/pynwb-2.1.0-r2.ebuild
index 14eed0e2f..e95649217 100644
--- a/dev-python/pynwb/pynwb-2.1.0-r2.ebuild
+++ b/dev-python/pynwb/pynwb-2.1.0-r2.ebuild
@@ -4,7 +4,7 @@
EAPI=8
DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_10 )
+PYTHON_COMPAT=( python3_{10..11} )
inherit distutils-r1
DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
diff --git a/dev-python/pynwb/pynwb-2.2.0-r1.ebuild b/dev-python/pynwb/pynwb-2.2.0-r1.ebuild
index 041418fbb..52fab7a63 100644
--- a/dev-python/pynwb/pynwb-2.2.0-r1.ebuild
+++ b/dev-python/pynwb/pynwb-2.2.0-r1.ebuild
@@ -4,7 +4,7 @@
EAPI=8
DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_10 )
+PYTHON_COMPAT=( python3_{10..11} )
inherit distutils-r1
DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
^ permalink raw reply related [flat|nested] 22+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/pynwb/
@ 2023-03-25 3:08 Horea Christian
0 siblings, 0 replies; 22+ messages in thread
From: Horea Christian @ 2023-03-25 3:08 UTC (permalink / raw
To: gentoo-commits
commit: fb68d10fc0b5f4b96772f83365eace1be3a4b8f4
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sat Mar 25 03:07:52 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sat Mar 25 03:07:52 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=fb68d10f
dev-python/pynwb: comment clarification
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/pynwb/pynwb-2.3.1-r1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dev-python/pynwb/pynwb-2.3.1-r1.ebuild b/dev-python/pynwb/pynwb-2.3.1-r1.ebuild
index 9f5f42370..585dcc37d 100644
--- a/dev-python/pynwb/pynwb-2.3.1-r1.ebuild
+++ b/dev-python/pynwb/pynwb-2.3.1-r1.ebuild
@@ -25,7 +25,7 @@ RDEPEND="
"
BDEPEND=""
-# Remove in next release
+# Remove both in next release
PATCHES=(
"${FILESDIR}/${P}-typing.patch"
"${FILESDIR}/${P}-pkg_resources.patch"
^ permalink raw reply related [flat|nested] 22+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/pynwb/
@ 2023-05-22 11:12 Horea Christian
0 siblings, 0 replies; 22+ messages in thread
From: Horea Christian @ 2023-05-22 11:12 UTC (permalink / raw
To: gentoo-commits
commit: d33365ba84ea3e62c9c90c2dc17fe4c2030ddc62
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon May 22 11:04:47 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon May 22 11:04:47 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d33365ba
dev-python/pynwb: drop 2.1.0-r2
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/pynwb/pynwb-2.1.0-r2.ebuild | 43 ----------------------------------
1 file changed, 43 deletions(-)
diff --git a/dev-python/pynwb/pynwb-2.1.0-r2.ebuild b/dev-python/pynwb/pynwb-2.1.0-r2.ebuild
deleted file mode 100644
index e95649217..000000000
--- a/dev-python/pynwb/pynwb-2.1.0-r2.ebuild
+++ /dev/null
@@ -1,43 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_{10..11} )
-inherit distutils-r1
-
-DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
-HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="
- >=sci-libs/hdf5-1.12.2
- >=dev-python/hdmf-3.3.2[${PYTHON_USEDEP}]
- dev-python/h5py[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/pandas[${PYTHON_USEDEP}]
- dev-python/python-dateutil[${PYTHON_USEDEP}]
- "
-BDEPEND=""
-
-PATCHES=(
- "${FILESDIR}/${P}-versions.patch"
- )
-
-EPYTEST_DESELECT=(
- # Reported upsream:
- # https://github.com/NeurodataWithoutBorders/pynwb/issues/1425
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_bad_ns
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_hdmf_common
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_ignore
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache
- tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache_bad_ns
-)
-
-distutils_enable_tests pytest
^ permalink raw reply related [flat|nested] 22+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/pynwb/
@ 2023-05-22 11:12 Horea Christian
0 siblings, 0 replies; 22+ messages in thread
From: Horea Christian @ 2023-05-22 11:12 UTC (permalink / raw
To: gentoo-commits
commit: aceee28fad7e9f381ac376e195df19877bb21bbc
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon May 22 11:12:08 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon May 22 11:12:08 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=aceee28f
dev-python/pynwb: drop 2.3.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/pynwb/pynwb-2.3.1.ebuild | 49 -------------------------------------
1 file changed, 49 deletions(-)
diff --git a/dev-python/pynwb/pynwb-2.3.1.ebuild b/dev-python/pynwb/pynwb-2.3.1.ebuild
deleted file mode 100644
index e36e65dbe..000000000
--- a/dev-python/pynwb/pynwb-2.3.1.ebuild
+++ /dev/null
@@ -1,49 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_{10..11} )
-inherit distutils-r1 pypi
-
-DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
-HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="
- >=sci-libs/hdf5-1.12.2
- >=dev-python/hdmf-3.3.2[${PYTHON_USEDEP}]
- dev-python/h5py[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/pandas[${PYTHON_USEDEP}]
- dev-python/python-dateutil[${PYTHON_USEDEP}]
- "
-BDEPEND=""
-
-# Remove in next release
-PATCHES=(
- "${FILESDIR}/${P}-typing.patch"
- )
-
-EPYTEST_DESELECT=(
- # Reported upsream:
- # https://github.com/NeurodataWithoutBorders/pynwb/issues/1580
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_bad_ns
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_core
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension_pass_ns
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_hdmf_common
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_ignore
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_invalid
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_core
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_extension
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache_bad_ns
-)
-
-distutils_enable_tests pytest
^ permalink raw reply related [flat|nested] 22+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/pynwb/
@ 2023-05-22 11:12 Horea Christian
0 siblings, 0 replies; 22+ messages in thread
From: Horea Christian @ 2023-05-22 11:12 UTC (permalink / raw
To: gentoo-commits
commit: 69e782ccfd16db0a1efb0d494de1c052a3ae4335
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon May 22 11:11:42 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon May 22 11:11:42 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=69e782cc
dev-python/pynwb: add 2.3.2
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/pynwb/pynwb-2.3.2.ebuild | 44 +++++++++++++++++++++++++++++++++++++
1 file changed, 44 insertions(+)
diff --git a/dev-python/pynwb/pynwb-2.3.2.ebuild b/dev-python/pynwb/pynwb-2.3.2.ebuild
new file mode 100644
index 000000000..6599fbf8f
--- /dev/null
+++ b/dev-python/pynwb/pynwb-2.3.2.ebuild
@@ -0,0 +1,44 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=setuptools
+PYTHON_COMPAT=( python3_{10..11} )
+inherit distutils-r1 pypi
+
+DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
+HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~x86"
+
+RDEPEND="
+ >=sci-libs/hdf5-1.12.2
+ >=dev-python/hdmf-3.3.2[${PYTHON_USEDEP}]
+ dev-python/h5py[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/pandas[${PYTHON_USEDEP}]
+ dev-python/python-dateutil[${PYTHON_USEDEP}]
+ "
+BDEPEND=""
+
+EPYTEST_DESELECT=(
+ # Reported upsream:
+ # https://github.com/NeurodataWithoutBorders/pynwb/issues/1580
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_bad_ns
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_core
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension_pass_ns
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_hdmf_common
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_ignore
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_invalid
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_core
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_extension
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache_bad_ns
+)
+
+distutils_enable_tests pytest
^ permalink raw reply related [flat|nested] 22+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/pynwb/
@ 2023-12-12 4:31 Horea Christian
0 siblings, 0 replies; 22+ messages in thread
From: Horea Christian @ 2023-12-12 4:31 UTC (permalink / raw
To: gentoo-commits
commit: 975e4101b9bcdf67bcfce0c05db3fa1d5ffa3bca
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Dec 12 04:31:23 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Dec 12 04:31:23 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=975e4101
dev-python/pynwb: add 2.5.0
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/pynwb/pynwb-2.5.0.ebuild | 50 +++++++++++++++++++++++++++++++++++++
1 file changed, 50 insertions(+)
diff --git a/dev-python/pynwb/pynwb-2.5.0.ebuild b/dev-python/pynwb/pynwb-2.5.0.ebuild
new file mode 100644
index 000000000..ca11c3dbe
--- /dev/null
+++ b/dev-python/pynwb/pynwb-2.5.0.ebuild
@@ -0,0 +1,50 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=setuptools
+PYTHON_COMPAT=( python3_{10..11} )
+inherit distutils-r1 pypi
+
+DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
+HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~x86"
+
+RDEPEND="
+ >=dev-python/hdmf-3.3.2[${PYTHON_USEDEP}]
+ >=sci-libs/hdf5-1.12.2
+ dev-python/h5py[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/pandas[${PYTHON_USEDEP}]
+ dev-python/python-dateutil[${PYTHON_USEDEP}]
+ dev-python/requests[${PYTHON_USEDEP}]
+ "
+
+EPYTEST_DESELECT=(
+ # Reported upsream:
+ # https://github.com/NeurodataWithoutBorders/pynwb/issues/1580
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_bad_ns
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_core
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension_pass_ns
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_hdmf_common
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_ignore
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_invalid
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_core
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_extension
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache_bad_ns
+ # Reported upstream:
+ # https://github.com/NeurodataWithoutBorders/pynwb/issues/1800
+ tests/unit/test_file.py::TestNoCacheSpec::test_simple
+ # Not sandboxed, reported upstream:
+ # https://github.com/NeurodataWithoutBorders/pynwb/issues/1800
+ tests/read_dandi/test_read_dandi.py::TestReadNWBDandisets::test_read_first_nwb_asset
+)
+
+distutils_enable_tests pytest
^ permalink raw reply related [flat|nested] 22+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/pynwb/
@ 2023-12-12 4:31 Horea Christian
0 siblings, 0 replies; 22+ messages in thread
From: Horea Christian @ 2023-12-12 4:31 UTC (permalink / raw
To: gentoo-commits
commit: ca5f9e39188f379372ca5a8f5dc29c1146d8cf59
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Dec 12 04:31:41 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Dec 12 04:31:41 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ca5f9e39
dev-python/pynwb: drop 2.2.0-r1, 2.3.1-r1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/pynwb/pynwb-2.2.0-r1.ebuild | 56 ----------------------------------
dev-python/pynwb/pynwb-2.3.1-r1.ebuild | 50 ------------------------------
2 files changed, 106 deletions(-)
diff --git a/dev-python/pynwb/pynwb-2.2.0-r1.ebuild b/dev-python/pynwb/pynwb-2.2.0-r1.ebuild
deleted file mode 100644
index 5a286c3b6..000000000
--- a/dev-python/pynwb/pynwb-2.2.0-r1.ebuild
+++ /dev/null
@@ -1,56 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_{10..11} )
-inherit distutils-r1 pypi
-
-DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
-HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="
- >=sci-libs/hdf5-1.12.2
- >=dev-python/hdmf-3.3.2[${PYTHON_USEDEP}]
- dev-python/h5py[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/pandas[${PYTHON_USEDEP}]
- dev-python/python-dateutil[${PYTHON_USEDEP}]
- "
-BDEPEND=""
-
-PATCHES=(
- "${FILESDIR}/${P}-versions.patch"
- )
-
-EPYTEST_DESELECT=(
- # Reported upsream:
- # https://github.com/NeurodataWithoutBorders/pynwb/issues/1580
- tests/back_compat/test_read.py::TestReadOldVersions::test_read
- tests/back_compat/test_read.py::TestReadOldVersions::test_read_imageseries_non_external_format
- tests/back_compat/test_read.py::TestReadOldVersions::test_read_imageseries_nonmatch_starting_frame
- tests/unit/test_image.py::ImageSeriesConstructor::test_external_file_with_data
- tests/unit/test_image.py::ImageSeriesConstructor::test_external_file_with_data_construct_mode
- tests/unit/test_image.py::ImageSeriesConstructor::test_external_file_with_incorrect_format
- tests/unit/test_image.py::ImageSeriesConstructor::test_external_file_with_incorrect_format_construct_mode
- tests/unit/test_image.py::ImageSeriesConstructor::test_external_file_with_incorrect_starting_frame
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_bad_ns
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_core
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension_pass_ns
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_hdmf_common
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_ignore
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_invalid
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_core
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_extension
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache_bad_ns
-)
-
-distutils_enable_tests pytest
diff --git a/dev-python/pynwb/pynwb-2.3.1-r1.ebuild b/dev-python/pynwb/pynwb-2.3.1-r1.ebuild
deleted file mode 100644
index 382bfdb60..000000000
--- a/dev-python/pynwb/pynwb-2.3.1-r1.ebuild
+++ /dev/null
@@ -1,50 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_{10..11} )
-inherit distutils-r1 pypi
-
-DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
-HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="
- >=sci-libs/hdf5-1.12.2
- >=dev-python/hdmf-3.3.2[${PYTHON_USEDEP}]
- dev-python/h5py[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/pandas[${PYTHON_USEDEP}]
- dev-python/python-dateutil[${PYTHON_USEDEP}]
- "
-BDEPEND=""
-
-# Remove both in next release
-PATCHES=(
- "${FILESDIR}/${P}-typing.patch"
- "${FILESDIR}/${P}-pkg_resources.patch"
- )
-
-EPYTEST_DESELECT=(
- # Reported upsream:
- # https://github.com/NeurodataWithoutBorders/pynwb/issues/1580
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_bad_ns
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_core
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension_pass_ns
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_hdmf_common
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_ignore
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_invalid
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_core
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_extension
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache_bad_ns
-)
-
-distutils_enable_tests pytest
^ permalink raw reply related [flat|nested] 22+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/pynwb/
@ 2024-03-21 22:15 Horea Christian
0 siblings, 0 replies; 22+ messages in thread
From: Horea Christian @ 2024-03-21 22:15 UTC (permalink / raw
To: gentoo-commits
commit: 7f1649f287ef810d3ad4745e0736501d329ff744
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Mar 21 16:55:56 2024 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Mar 21 22:15:29 2024 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7f1649f2
dev-python/pynwb: add 2.6.0, drop 2.3.2
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/pynwb/{pynwb-2.3.2.ebuild => pynwb-2.6.0.ebuild} | 11 +++++++++--
1 file changed, 9 insertions(+), 2 deletions(-)
diff --git a/dev-python/pynwb/pynwb-2.3.2.ebuild b/dev-python/pynwb/pynwb-2.6.0.ebuild
similarity index 81%
rename from dev-python/pynwb/pynwb-2.3.2.ebuild
rename to dev-python/pynwb/pynwb-2.6.0.ebuild
index 6599fbf8f..2f403981c 100644
--- a/dev-python/pynwb/pynwb-2.3.2.ebuild
+++ b/dev-python/pynwb/pynwb-2.6.0.ebuild
@@ -15,14 +15,14 @@ LICENSE="BSD"
KEYWORDS="~amd64 ~x86"
RDEPEND="
- >=sci-libs/hdf5-1.12.2
>=dev-python/hdmf-3.3.2[${PYTHON_USEDEP}]
+ >=sci-libs/hdf5-1.12.2
dev-python/h5py[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/pandas[${PYTHON_USEDEP}]
dev-python/python-dateutil[${PYTHON_USEDEP}]
+ dev-python/requests[${PYTHON_USEDEP}]
"
-BDEPEND=""
EPYTEST_DESELECT=(
# Reported upsream:
@@ -39,6 +39,13 @@ EPYTEST_DESELECT=(
tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_extension
tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache
tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache_bad_ns
+ # Reported upstream:
+ # https://github.com/NeurodataWithoutBorders/pynwb/issues/1800
+ tests/unit/test_file.py::TestNoCacheSpec::test_simple
+ # Not sandboxed, reported upstream:
+ # https://github.com/NeurodataWithoutBorders/pynwb/issues/1800
+ tests/read_dandi/test_read_dandi.py::TestReadNWBDandisets::test_read_first_nwb_asset
+ tests/unit/test_base.py::TestTimeSeries::test_repr_html
)
distutils_enable_tests pytest
^ permalink raw reply related [flat|nested] 22+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/pynwb/
@ 2024-07-29 0:49 Horea Christian
0 siblings, 0 replies; 22+ messages in thread
From: Horea Christian @ 2024-07-29 0:49 UTC (permalink / raw
To: gentoo-commits
commit: fa0d20f4e72fad14033136d286c586719b055f87
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon Jul 29 00:49:24 2024 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon Jul 29 00:49:24 2024 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=fa0d20f4
dev-python/pynwb: enable py3.12
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/pynwb/pynwb-2.6.0.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/dev-python/pynwb/pynwb-2.6.0.ebuild b/dev-python/pynwb/pynwb-2.6.0.ebuild
index 2f403981c..c19c57fe3 100644
--- a/dev-python/pynwb/pynwb-2.6.0.ebuild
+++ b/dev-python/pynwb/pynwb-2.6.0.ebuild
@@ -4,14 +4,14 @@
EAPI=8
DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_{10..11} )
+PYTHON_COMPAT=( python3_{10..12} )
inherit distutils-r1 pypi
DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"
-SLOT="0"
LICENSE="BSD"
+SLOT="0"
KEYWORDS="~amd64 ~x86"
RDEPEND="
^ permalink raw reply related [flat|nested] 22+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/pynwb/
@ 2024-07-30 15:30 Horea Christian
0 siblings, 0 replies; 22+ messages in thread
From: Horea Christian @ 2024-07-30 15:30 UTC (permalink / raw
To: gentoo-commits
commit: d703db1f390fd4005132b673b312715d73d6b7ef
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Jul 30 15:29:53 2024 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jul 30 15:29:53 2024 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d703db1f
dev-python/pynwb: add 2.8.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/pynwb/pynwb-2.8.1.ebuild | 54 +++++++++++++++++++++++++++++++++++++
1 file changed, 54 insertions(+)
diff --git a/dev-python/pynwb/pynwb-2.8.1.ebuild b/dev-python/pynwb/pynwb-2.8.1.ebuild
new file mode 100644
index 000000000..5be67428b
--- /dev/null
+++ b/dev-python/pynwb/pynwb-2.8.1.ebuild
@@ -0,0 +1,54 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+#DISTUTILS_USE_PEP517=setuptools
+DISTUTILS_USE_PEP517=hatchling
+PYTHON_COMPAT=( python3_{10..12} )
+inherit distutils-r1 pypi
+
+DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
+HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~x86"
+# Segfault error on testing
+RESTRICT="test"
+
+RDEPEND="
+ >=dev-python/hdmf-3.14.3[${PYTHON_USEDEP}]
+ >=sci-libs/hdf5-1.12.2
+ dev-python/h5py[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/pandas[${PYTHON_USEDEP}]
+ dev-python/python-dateutil[${PYTHON_USEDEP}]
+ dev-python/requests[${PYTHON_USEDEP}]
+ "
+
+EPYTEST_DESELECT=(
+ # Reported upsream:
+ # https://github.com/NeurodataWithoutBorders/pynwb/issues/1580
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_bad_ns
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_core
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension_pass_ns
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_hdmf_common
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_ignore
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_invalid
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_core
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_extension
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache
+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache_bad_ns
+ # Reported upstream:
+ # https://github.com/NeurodataWithoutBorders/pynwb/issues/1800
+ tests/unit/test_file.py::TestNoCacheSpec::test_simple
+ # Not sandboxed, reported upstream:
+ # https://github.com/NeurodataWithoutBorders/pynwb/issues/1800
+ tests/read_dandi/test_read_dandi.py::TestReadNWBDandisets::test_read_first_nwb_asset
+ tests/unit/test_base.py::TestTimeSeries::test_repr_html
+)
+
+distutils_enable_tests pytest
^ permalink raw reply related [flat|nested] 22+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/pynwb/
@ 2024-07-30 15:34 Horea Christian
0 siblings, 0 replies; 22+ messages in thread
From: Horea Christian @ 2024-07-30 15:34 UTC (permalink / raw
To: gentoo-commits
commit: f63ef6ce88226de4e1f950b62d5af2005c78cb2b
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Jul 30 15:31:05 2024 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jul 30 15:31:05 2024 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f63ef6ce
dev-python/pynwb: reordered variables
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/pynwb/pynwb-2.5.0.ebuild | 2 +-
dev-python/pynwb/pynwb-2.8.1.ebuild | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/dev-python/pynwb/pynwb-2.5.0.ebuild b/dev-python/pynwb/pynwb-2.5.0.ebuild
index ca11c3dbe..0a357113f 100644
--- a/dev-python/pynwb/pynwb-2.5.0.ebuild
+++ b/dev-python/pynwb/pynwb-2.5.0.ebuild
@@ -10,8 +10,8 @@ inherit distutils-r1 pypi
DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"
-SLOT="0"
LICENSE="BSD"
+SLOT="0"
KEYWORDS="~amd64 ~x86"
RDEPEND="
diff --git a/dev-python/pynwb/pynwb-2.8.1.ebuild b/dev-python/pynwb/pynwb-2.8.1.ebuild
index 5be67428b..1fb2ba26a 100644
--- a/dev-python/pynwb/pynwb-2.8.1.ebuild
+++ b/dev-python/pynwb/pynwb-2.8.1.ebuild
@@ -11,8 +11,8 @@ inherit distutils-r1 pypi
DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"
-SLOT="0"
LICENSE="BSD"
+SLOT="0"
KEYWORDS="~amd64 ~x86"
# Segfault error on testing
RESTRICT="test"
^ permalink raw reply related [flat|nested] 22+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/pynwb/
@ 2024-07-30 15:34 Horea Christian
0 siblings, 0 replies; 22+ messages in thread
From: Horea Christian @ 2024-07-30 15:34 UTC (permalink / raw
To: gentoo-commits
commit: b844b4398ad930d83404b007baf88b19b16df0ab
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Jul 30 15:31:46 2024 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jul 30 15:31:46 2024 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b844b439
dev-python/pynwb: drop 2.5.0
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/pynwb/pynwb-2.5.0.ebuild | 50 -------------------------------------
1 file changed, 50 deletions(-)
diff --git a/dev-python/pynwb/pynwb-2.5.0.ebuild b/dev-python/pynwb/pynwb-2.5.0.ebuild
deleted file mode 100644
index 0a357113f..000000000
--- a/dev-python/pynwb/pynwb-2.5.0.ebuild
+++ /dev/null
@@ -1,50 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DISTUTILS_USE_PEP517=setuptools
-PYTHON_COMPAT=( python3_{10..11} )
-inherit distutils-r1 pypi
-
-DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
-HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="
- >=dev-python/hdmf-3.3.2[${PYTHON_USEDEP}]
- >=sci-libs/hdf5-1.12.2
- dev-python/h5py[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/pandas[${PYTHON_USEDEP}]
- dev-python/python-dateutil[${PYTHON_USEDEP}]
- dev-python/requests[${PYTHON_USEDEP}]
- "
-
-EPYTEST_DESELECT=(
- # Reported upsream:
- # https://github.com/NeurodataWithoutBorders/pynwb/issues/1580
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_bad_ns
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_core
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension_pass_ns
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_hdmf_common
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_ignore
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_invalid
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_core
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_extension
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache
- tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache_bad_ns
- # Reported upstream:
- # https://github.com/NeurodataWithoutBorders/pynwb/issues/1800
- tests/unit/test_file.py::TestNoCacheSpec::test_simple
- # Not sandboxed, reported upstream:
- # https://github.com/NeurodataWithoutBorders/pynwb/issues/1800
- tests/read_dandi/test_read_dandi.py::TestReadNWBDandisets::test_read_first_nwb_asset
-)
-
-distutils_enable_tests pytest
^ permalink raw reply related [flat|nested] 22+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/pynwb/
@ 2024-09-23 14:28 Andrew Ammerlaan
0 siblings, 0 replies; 22+ messages in thread
From: Andrew Ammerlaan @ 2024-09-23 14:28 UTC (permalink / raw
To: gentoo-commits
commit: e9c547a845d63e54bc0c1ee5995eceeea2d5bc6b
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 23 14:26:48 2024 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Mon Sep 23 14:26:48 2024 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e9c547a8
dev-python/pynwb: drop ~x86
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
dev-python/pynwb/pynwb-2.6.0.ebuild | 2 +-
dev-python/pynwb/pynwb-2.8.1.ebuild | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/dev-python/pynwb/pynwb-2.6.0.ebuild b/dev-python/pynwb/pynwb-2.6.0.ebuild
index c19c57fe3..70b7e47a8 100644
--- a/dev-python/pynwb/pynwb-2.6.0.ebuild
+++ b/dev-python/pynwb/pynwb-2.6.0.ebuild
@@ -12,7 +12,7 @@ HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"
LICENSE="BSD"
SLOT="0"
-KEYWORDS="~amd64 ~x86"
+KEYWORDS="~amd64"
RDEPEND="
>=dev-python/hdmf-3.3.2[${PYTHON_USEDEP}]
diff --git a/dev-python/pynwb/pynwb-2.8.1.ebuild b/dev-python/pynwb/pynwb-2.8.1.ebuild
index 1fb2ba26a..c2f2407eb 100644
--- a/dev-python/pynwb/pynwb-2.8.1.ebuild
+++ b/dev-python/pynwb/pynwb-2.8.1.ebuild
@@ -13,7 +13,7 @@ HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"
LICENSE="BSD"
SLOT="0"
-KEYWORDS="~amd64 ~x86"
+KEYWORDS="~amd64"
# Segfault error on testing
RESTRICT="test"
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